View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6909_low_16 (Length: 318)
Name: NF6909_low_16
Description: NF6909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6909_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 9 - 314
Target Start/End: Complemental strand, 27480921 - 27480617
Alignment:
| Q |
9 |
atatataaaataacagagaactagtagatggtttggtacactcctatctcaaatggttagtatttgaaccacatatatttcttttcattatgttgttttg |
108 |
Q |
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| T |
27480921 |
atataaaaaataaaagagaactagtagatggtttg-tactctcctatctcaaatggttagtatttgaaccttaataatttcttttcattatgttgttttg |
27480823 |
T |
|
| Q |
109 |
tttgaagtgtannnnnnnnnnnnngttagatgcagatgaataggcggttttatatgttgaaatggtttcaggagaagcatgccactcctgttttaataaa |
208 |
Q |
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||||||||||| |||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27480822 |
tttgaagtgtattttttcttttttgttagatgcagatgaagaggcggttttatatgctgaaatggtttcaggagaagcatgccactcctgttttaataaa |
27480723 |
T |
|
| Q |
209 |
ttctaaggtatttttatcacgcaatgtgtgttttatttatgtatcaggttgtctctaagactatcagattttctatttctgcatttgttaagcttctctg |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27480722 |
ttctaaggtatttttatcacgcaatgtgtgttttatttatgtatcaggttgtctctaagactatcagattttctatttctgcatttgttaagcttctctg |
27480623 |
T |
|
| Q |
309 |
ctactc |
314 |
Q |
| |
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||||| |
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| T |
27480622 |
ttactc |
27480617 |
T |
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