View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6909_low_17 (Length: 306)
Name: NF6909_low_17
Description: NF6909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6909_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 20 - 292
Target Start/End: Complemental strand, 38580051 - 38579778
Alignment:
| Q |
20 |
ccatgaacctgatttatggattgctcagtatttgtggatgacacaaacaaaaactgatacgcatctcaaacttatataccatacaattaagcatttagta |
119 |
Q |
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| T |
38580051 |
ccatgaacctgatttatggattgctcagtatttgtggatgacacaaacaaaaactgatacgcatctcaaacttatataccatacaattaagcatttagta |
38579952 |
T |
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| Q |
120 |
atgcatacagtcatagagacaatgctttgtaagaaaaatctttagttgctttcttgtccgacttctttgttactggcttacgccaagtattgctatttta |
219 |
Q |
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| T |
38579951 |
atgcatacagtcatagagacaatgctttgtaagaaaaatctttagttgctttcttgtccgacttctttgttactggcttacgccaagtattgctatttta |
38579852 |
T |
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| Q |
220 |
ctt-caaggatttttatatttaaaaattttagttcataaaactgctcccagcgccttatcgtccagcttcttct |
292 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
38579851 |
cttccaaggatttttatatttaaaaattttagttcataaaactgctctcagcgccttatcgtccagcttcttct |
38579778 |
T |
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