View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6909_low_20 (Length: 291)
Name: NF6909_low_20
Description: NF6909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6909_low_20 |
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Alignment Details
Target: chr7 (Bit Score: 91; Significance: 4e-44; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 189 - 283
Target Start/End: Original strand, 24506443 - 24506537
Alignment:
| Q |
189 |
gttggttgtgtgagttgaatgtaaattgtgcaggttttgaagcatgcgctaggaaggattaattttgtgttggcatcaagtgccttattcttctc |
283 |
Q |
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| T |
24506443 |
gttgattgtgtgagttgaatgtaaattgtgcaggttttgaagcatgcgctaggaaggattaattttgtgttggcatcaagtgccttattcttctc |
24506537 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 24517901 - 24518013
Alignment:
| Q |
1 |
tcacaaagctaccatattcttcgagctaaggttctccccttttgcaagtttttggtatgttatgatgactggttgactaactcttcctcgcttacaagat |
100 |
Q |
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| T |
24517901 |
tcacaaagctaccatattctgcaagctaaggttctctccttatggaattttttggtatattatgaaaattggttgactaactcttcctctgttacatgat |
24518000 |
T |
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| Q |
101 |
caagggagatgat |
113 |
Q |
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| T |
24518001 |
caaggtagatgat |
24518013 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 190 - 246
Target Start/End: Original strand, 24518089 - 24518145
Alignment:
| Q |
190 |
ttggttgtgtgagttgaatgtaaattgtgcaggttttgaagcatgcgctaggaagga |
246 |
Q |
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| T |
24518089 |
ttggttgtatgagttgaatgtaaattatgtagggtttgaagcatgtgctagaaagga |
24518145 |
T |
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Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 35456026 - 35456099
Alignment:
| Q |
1 |
tcacaaagctaccatattcttcgagctaaggttctccccttttgcaagtttttggtatgttatgatgactggtt |
74 |
Q |
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| T |
35456026 |
tcacaaagctaccatattctgctagctaaggttatctccttatgcaagtttttggtatgttatgaagactggtt |
35456099 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 187 - 234
Target Start/End: Original strand, 35456163 - 35456210
Alignment:
| Q |
187 |
cagttggttgtgtgagttgaatgtaaattgtgcaggttttgaagcatg |
234 |
Q |
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| T |
35456163 |
cagttggttgtgtgaattgaatgtaaattgtgcaggttttgaatcatg |
35456210 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 195 - 233
Target Start/End: Original strand, 29082248 - 29082286
Alignment:
| Q |
195 |
tgtgtgagttgaatgtaaattgtgcaggttttgaagcat |
233 |
Q |
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| T |
29082248 |
tgtgtgagttgaatgtaaattgtgcaggttttgaagcat |
29082286 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 113
Target Start/End: Original strand, 29082101 - 29082173
Alignment:
| Q |
41 |
tttgcaagtttttggtatgttatgatgactggttgactaactcttcctcgcttacaagatcaagggagatgat |
113 |
Q |
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| T |
29082101 |
tttgcaagtttttggaatcttaggaagactggtttactaactcttcctctgttacaggctcatgggagatgat |
29082173 |
T |
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