View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6909_low_26 (Length: 264)
Name: NF6909_low_26
Description: NF6909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6909_low_26 |
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Alignment Details
Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 49281183 - 49281427
Alignment:
| Q |
1 |
cataatatatacaaagtccgagttcaaaccccaaccaccacccnnnnnnntatgtactccacaaagtcttgtcgaagttaaagatgagttcgtttatttt |
100 |
Q |
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| T |
49281183 |
cataatatatgtaaagtccgagttcaaaccccaaccaccacccaaaaaaatatgtactccacaaagtcttgtcgaagttaaagatgagttcgtt-atttt |
49281281 |
T |
|
| Q |
101 |
ctgaaaaatgatcaagatatgttcattataaccatttgtaattatttgctaaagagcatttgctctttgaattacccctacaaatgcatccttagaaata |
200 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
49281282 |
ctgaaaaatgataaagatatgttcattataaccatttgtaattatttgctaaagagcatttgctctttgaattacccctacaaatgcatccgtagaaata |
49281381 |
T |
|
| Q |
201 |
tttagccatgtgtgaagagtttatcttcctctcgggtgaaccttat |
246 |
Q |
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| T |
49281382 |
tttagccatgtgtgaggagtttatcttcctctcggatgaaccttat |
49281427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 119 - 245
Target Start/End: Original strand, 33166682 - 33166815
Alignment:
| Q |
119 |
atgttcattataaccatttgtaattattt-gctaaagagcatttgctctttgaattacccct--acaaatgcatccttagaaatatttagccatg--tg- |
212 |
Q |
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||||||||||||||||| || |||| ||| || ||| | |||||||||||||| |||||||| |||| |||||||||||||||||||||||||| || |
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| T |
33166682 |
atgttcattataaccatctgcaattcttttgccaaaaaacatttgctctttgatttacccctgtacaactgcatccttagaaatatttagccatgattgg |
33166781 |
T |
|
| Q |
213 |
-tgaagagtttatcttcctctcgggtgaacctta |
245 |
Q |
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| T |
33166782 |
atgaggagtttatcttcctctggggtgaacctta |
33166815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 6582319 - 6582351
Alignment:
| Q |
1 |
cataatatatacaaagtccgagttcaaacccca |
33 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
6582319 |
cataatatatacaaagtccgagttcaaacccca |
6582351 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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