View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6909_low_29 (Length: 247)

Name: NF6909_low_29
Description: NF6909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6909_low_29
NF6909_low_29
[»] chr3 (16 HSPs)
chr3 (1-228)||(6436740-6436967)
chr3 (6-228)||(9262670-9262892)
chr3 (96-233)||(37837482-37837619)
chr3 (105-204)||(12125482-12125581)
chr3 (18-215)||(9611704-9611902)
chr3 (18-160)||(12743134-12743275)
chr3 (109-224)||(10975664-10975779)
chr3 (91-240)||(20934187-20934336)
chr3 (23-78)||(11654772-11654827)
chr3 (106-175)||(37836726-37836795)
chr3 (111-227)||(6087167-6087283)
chr3 (105-229)||(50331915-50332039)
chr3 (114-175)||(431983-432044)
chr3 (106-203)||(20934980-20935076)
chr3 (106-203)||(32976454-32976550)
chr3 (106-203)||(42400366-42400462)
[»] chr8 (11 HSPs)
chr8 (4-240)||(15276766-15277002)
chr8 (4-240)||(15457135-15457371)
chr8 (106-238)||(18431511-18431643)
chr8 (91-225)||(45528178-45528312)
chr8 (113-215)||(23141614-23141716)
chr8 (111-229)||(42797242-42797360)
chr8 (92-155)||(5685873-5685936)
chr8 (107-229)||(13756544-13756666)
chr8 (105-147)||(14715284-14715326)
chr8 (30-128)||(21585697-21585794)
chr8 (108-233)||(17888049-17888174)
[»] chr2 (15 HSPs)
chr2 (1-240)||(14872617-14872856)
chr2 (1-195)||(14869645-14869839)
chr2 (94-241)||(45659128-45659276)
chr2 (94-242)||(45058404-45058553)
chr2 (106-238)||(3395400-3395532)
chr2 (113-232)||(5788052-5788171)
chr2 (113-215)||(41753979-41754081)
chr2 (111-212)||(29977334-29977435)
chr2 (111-238)||(36720078-36720205)
chr2 (112-215)||(36727604-36727707)
chr2 (96-203)||(39839071-39839177)
chr2 (108-238)||(20106611-20106741)
chr2 (115-240)||(6466926-6467051)
chr2 (106-203)||(19040704-19040800)
chr2 (109-166)||(36720846-36720903)
[»] chr4 (9 HSPs)
chr4 (4-240)||(24182446-24182682)
chr4 (4-242)||(28474835-28475074)
chr4 (29-227)||(11560140-11560337)
chr4 (25-240)||(42756767-42756982)
chr4 (91-240)||(35648523-35648672)
chr4 (18-128)||(39977947-39978056)
chr4 (109-145)||(17450111-17450147)
chr4 (24-160)||(285019-285154)
chr4 (106-238)||(13228699-13228830)
[»] chr1 (9 HSPs)
chr1 (18-240)||(16852803-16853025)
chr1 (23-240)||(31089488-31089706)
chr1 (101-238)||(43387047-43387184)
chr1 (142-198)||(6846855-6846911)
chr1 (106-203)||(20306716-20306812)
chr1 (123-168)||(27342216-27342261)
chr1 (106-202)||(30001726-30001821)
chr1 (106-203)||(40946526-40946622)
chr1 (180-240)||(16853689-16853749)
[»] scaffold0191 (1 HSPs)
scaffold0191 (23-203)||(5835-6015)
[»] chr7 (15 HSPs)
chr7 (35-166)||(6188699-6188830)
chr7 (35-166)||(6195215-6195346)
chr7 (158-239)||(6189844-6189925)
chr7 (23-168)||(24709121-24709266)
chr7 (105-238)||(4110312-4110443)
chr7 (111-188)||(42078960-42079039)
chr7 (111-230)||(6677088-6677207)
chr7 (105-238)||(17474619-17474752)
chr7 (105-238)||(17510103-17510236)
chr7 (105-238)||(17542978-17543111)
chr7 (105-238)||(17578462-17578595)
chr7 (91-147)||(26373908-26373964)
chr7 (196-233)||(46905036-46905073)
chr7 (25-61)||(4110489-4110525)
chr7 (180-240)||(18290421-18290481)
[»] chr6 (11 HSPs)
chr6 (109-242)||(34515092-34515226)
chr6 (29-230)||(26596686-26596887)
chr6 (105-238)||(24397915-24398047)
chr6 (105-150)||(4852807-4852852)
chr6 (105-150)||(11554426-11554471)
chr6 (105-223)||(1599688-1599806)
chr6 (113-215)||(1599848-1599950)
chr6 (106-203)||(7428468-7428564)
chr6 (106-163)||(26597619-26597676)
chr6 (111-188)||(28365737-28365813)
chr6 (111-203)||(16279063-16279154)
[»] scaffold0024 (1 HSPs)
scaffold0024 (29-165)||(46408-46544)
[»] scaffold0074 (1 HSPs)
scaffold0074 (105-238)||(30838-30970)
[»] scaffold1312 (1 HSPs)
scaffold1312 (117-240)||(2-125)
[»] scaffold0159 (1 HSPs)
scaffold0159 (113-232)||(32425-32544)
[»] scaffold0021 (1 HSPs)
scaffold0021 (109-224)||(128254-128369)
[»] chr5 (3 HSPs)
chr5 (106-240)||(38015878-38016012)
chr5 (106-169)||(9048627-9048690)
chr5 (111-143)||(33009849-33009881)
[»] scaffold0377 (1 HSPs)
scaffold0377 (111-188)||(12554-12633)
[»] scaffold1933 (1 HSPs)
scaffold1933 (23-242)||(525-744)
[»] scaffold0169 (1 HSPs)
scaffold0169 (107-150)||(2286-2329)
[»] scaffold1315 (1 HSPs)
scaffold1315 (122-240)||(1275-1393)
[»] scaffold1293 (1 HSPs)
scaffold1293 (122-240)||(678-796)
[»] scaffold0284 (1 HSPs)
scaffold0284 (108-242)||(7537-7671)
[»] scaffold0012 (1 HSPs)
scaffold0012 (105-147)||(95961-96003)


Alignment Details
Target: chr3 (Bit Score: 208; Significance: 1e-114; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 6436740 - 6436967
Alignment:
Q  1 ttttctataaaaccgataccatcccacattttttaacatgttgtgtctctgatcttatttggctctctcaccagatcagaaatatgaattgtctcacacg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | |||||||||||||    
T  6436740 ttttctataaaaccgataccatcccacattttttaacatgttgtgtctttgatcttatttggctctctcaccagatcagaaatacggattgtctcacacg 6436839  T
Q  101 taacagagatatgttaatgtgtcatgtgtaagttaaacttctacattggaagcaaaagtatatattgagaaacatgaatgtgagatgactaatatacata 200  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6436840 taacagagatatgttaatgtgtcatgtctaagttaaacttctacattggaagcaaaagtatatattgagaaacatgaatgtgagatgactaatatacata 6436939  T
Q  201 atgtattaaggttttaggtgaagatgtg 228  Q
    |||||||||||| |||||||||||||||    
T  6436940 atgtattaaggtgttaggtgaagatgtg 6436967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 6 - 228
Target Start/End: Original strand, 9262670 - 9262892
Alignment:
Q  6 tataaaaccgataccatcccacattttttaacatgttgtgtctctgatcttatttggctctctcaccagatcagaaatatgaattgtctcacacgtaaca 105  Q
    ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| | ||||||||||||||||||    
T  9262670 tataaaatcgataccaacccacattttttaacatgttgtgtctctgatcttatttgactctctcaccatatcagaaatacggattgtctcacacgtaaca 9262769  T
Q  106 gagatatgttaatgtgtcatgtgtaagttaaacttctacattggaagcaaaagtatatattgagaaacatgaatgtgagatgactaatatacataatgta 205  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  9262770 gaaatatgttaatgtgtcatgtgtaagttaaacttctacattggaagcaaaaatatatattgagaaacatgaatgtgagatgactaatatacataatgta 9262869  T
Q  206 ttaaggttttaggtgaagatgtg 228  Q
    |||||||||||||||||||||||    
T  9262870 ttaaggttttaggtgaagatgtg 9262892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 96 - 233
Target Start/End: Complemental strand, 37837619 - 37837482
Alignment:
Q  96 acacgtaacagagatatgttaatgtgtcatgtgtaagttaaacttctacattggaagcaaaagtatatattgagaaacatgaatgtgagatgactaatat 195  Q
    |||| ||| |||||||||||||||||| |||||| | |||||||| ||| ||||| | ||||||| ||||||||||||||  |  ||||||||| |||||    
T  37837619 acacttaaaagagatatgttaatgtgttatgtgtgatttaaacttatacgttggatgaaaaagtagatattgagaaacatataaatgagatgaccaatat 37837520  T
Q  196 acataatgtattaaggttttaggtgaagatgtgatgtc 233  Q
    |  ||||||||||| |||||  || |||||||||||||    
T  37837519 aactaatgtattaaagtttttagtaaagatgtgatgtc 37837482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 105 - 204
Target Start/End: Complemental strand, 12125581 - 12125482
Alignment:
Q  105 agagatatgttaatgtgtcatgtgtaagttaaacttctacattggaagcaaaagtatatattgagaaacatgaatgtgagatgactaatatacataatgt 204  Q
    ||||| |||||||||||||||  || ||||| |||||||| || || |||| ||||||||||||| |||||  |||||||||||| ||||||| ||||||    
T  12125581 agagagatgttaatgtgtcattagtgagttacacttctacttttgatgcaagagtatatattgagcaacatatatgtgagatgaccaatatacctaatgt 12125482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 215
Target Start/End: Complemental strand, 9611902 - 9611704
Alignment:
Q  18 accatcccacattttttaacatgttgtgtctctgatcttatttggctctctcaccagatcagaaatatgaattgtctcacacgtaaca-gagatatgtta 116  Q
    |||||||||| ||||||| ||||||||| ||||||  ||||| |||| |||||| |  ||| |||||  ||  |||||| || ||| | ||||| |||||    
T  9611902 accatcccaccttttttaccatgttgtgcctctgacgttattaggctatctcacaaagtcacaaatacaaagagtctcatacttaagaagagatgtgtta 9611803  T
Q  117 atgtgtcatgtgtaagttaaacttctacattggaagcaaaagtatatattgagaaacatgaatgtgagatgactaatatacataatgtattaaggtttt 215  Q
    ||||||||||||| | |||||||||||| ||||| |||| |||| || || || || |||   ||||||||||   ||||| |||||| ||||||||||    
T  9611802 atgtgtcatgtgtgatttaaacttctacgttggatgcaatagtagattttaagcaaaatgttagtgagatgacccgtatacctaatgtcttaaggtttt 9611704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 160
Target Start/End: Complemental strand, 12743275 - 12743134
Alignment:
Q  18 accatcccacattttttaacatgttgtgtctctgatcttatttggctctctcaccagatcagaaatatgaattgtctcacacgtaacagagatatgttaa 117  Q
    |||| ||||| ||||||| ||||||||| |||||| |||||| |||| |||||| |  ||| |||||  || |||||||||| ||| | ||| |||||||    
T  12743275 accaacccaccttttttaccatgttgtgcctctgaccttattaggctatctcacaaagtcacaaatacaaagtgtctcacacttaaaa-agagatgttaa 12743177  T
Q  118 tgtgtcatgtgtaagttaaacttctacattggaagcaaaagta 160  Q
    |||||||||||  |||||||||||||  ||||| |||| ||||    
T  12743176 tgtgtcatgtgagagttaaacttctaggttggatgcaagagta 12743134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 109 - 224
Target Start/End: Complemental strand, 10975779 - 10975664
Alignment:
Q  109 atatgttaatgtgtcatgtgtaagttaaacttctacattggaagcaaaagtatatattgagaaacatgaatgtgagatgactaatatacataatgtatta 208  Q
    ||||||| ||||||||||||| ||||||||||||| |||||  |||| ||||||||||||| |||||  | | ||||| |  |||| | ||||||| |||    
T  10975779 atatgtttatgtgtcatgtgtgagttaaacttctatattggctgcaatagtatatattgagtaacatataagcgagataaaaaatacatataatgtctta 10975680  T
Q  209 aggttttaggtgaaga 224  Q
    || ||||||| |||||    
T  10975679 agattttaggcgaaga 10975664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 91 - 240
Target Start/End: Complemental strand, 20934336 - 20934187
Alignment:
Q  91 gtctcacacgtaacagagatatgttaatgtgtcatgtgtaagttaaacttctacattggaagcaaaagtatatattgagaaacatgaatgtgagatgact 190  Q
    ||||||||| |||  |||| ||||| |||| |||||||| | |||||||||||||||| | |||| | ||||||||||| |||||  | | |||| ||      
T  20934336 gtctcacacataagggagagatgtttatgtttcatgtgtgacttaaacttctacattgtatgcaataatatatattgagcaacatataagcgagaagaac 20934237  T
Q  191 aatatacataatgtattaaggttttaggtgaagatgtgatgtccatctca 240  Q
    ||||||| |||||  ||||| ||||| ||||| ||||| |||| ||||||    
T  20934236 aatatacctaatgccttaagattttacgtgaatatgtggtgtcaatctca 20934187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 78
Target Start/End: Complemental strand, 11654827 - 11654772
Alignment:
Q  23 cccacattttttaacatgttgtgtctctgatcttatttggctctctcaccagatca 78  Q
    |||| |||||||| ||||||| |||||||||||||||||||| ||||| |||||||    
T  11654827 cccatattttttaccatgttgagtctctgatcttatttggctatctcatcagatca 11654772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 106 - 175
Target Start/End: Complemental strand, 37836795 - 37836726
Alignment:
Q  106 gagatatgttaatgtgtcatgtgtaagttaaacttctacattggaagcaaaagtatatattgagaaacat 175  Q
    |||||||||||||||||||  ||||||||||| ||| || | ||||||||||||| || |||| ||||||    
T  37836795 gagatatgttaatgtgtcacttgtaagttaaagttccacgtcggaagcaaaagtaaatgttgaaaaacat 37836726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 111 - 227
Target Start/End: Complemental strand, 6087283 - 6087167
Alignment:
Q  111 atgttaatgtgtcatgtgtaagttaaacttctacattggaagcaaaagtatatattgagaaacatgaatgtgagatgactaatatacataatgtattaag 210  Q
    ||||| ||||||||||| |||||||||||||||||||  | |||| ||||||||   || |||||  | ||||||| || | ||||| |||| | | |||    
T  6087283 atgttgatgtgtcatgtttaagttaaacttctacatttcatgcaatagtatataactagcaacatataagtgagattacaagtatacctaatatctcaag 6087184  T
Q  211 gttttaggtgaagatgt 227  Q
    |||||||||||| ||||    
T  6087183 gttttaggtgaaaatgt 6087167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 105 - 229
Target Start/End: Complemental strand, 50332039 - 50331915
Alignment:
Q  105 agagatatgttaatgtgtcatgtgtaagttaaacttctacattggaagcaaaagtatatattgagaaacatgaatgtgagatgactaatatacataatgt 204  Q
    ||||| |||||||||||||| |||| ||||||| |   |||||| | |||| |||| || |||||||||||  | ||||||||||| || ||  ||||||    
T  50332039 agagagatgttaatgtgtcaagtgtgagttaaaataacacattgaatgcaatagtagatgttgagaaacatataagtgagatgactcatgtatctaatgt 50331940  T
Q  205 attaaggttttaggtgaagatgtga 229  Q
     ||||| |||| ||||||| |||||    
T  50331939 cttaagattttgggtgaagttgtga 50331915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 114 - 175
Target Start/End: Original strand, 431983 - 432044
Alignment:
Q  114 ttaatgtgtcatgtgtaagttaaacttctacattggaagcaaaagtatatattgagaaacat 175  Q
    |||||||||||  ||| ||||||| ||| |||||||| |||| ||||||| |||||||||||    
T  431983 ttaatgtgtcaattgtgagttaaaattcgacattggatgcaagagtatatgttgagaaacat 432044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 106 - 203
Target Start/End: Complemental strand, 20935076 - 20934980
Alignment:
Q  106 gagatatgttaatgtgtcatgtgtaagttaaacttctacattggaagcaaaagtatatattgagaaacatgaatgtgagatgactaatatacataatg 203  Q
    |||| |||||||||||||| |||| ||||||| || || |||| | |||| |||| || | |||||||||  | ||||||||||| ||||||||||||    
T  20935076 gagagatgttaatgtgtcaggtgtgagttaaaattttatattgtatgcaatagtagatgt-gagaaacatttaagtgagatgactcatatacataatg 20934980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 106 - 203
Target Start/End: Complemental strand, 32976550 - 32976454
Alignment:
Q  106 gagatatgttaatgtgtcatgtgtaagttaaacttctacattggaagcaaaagtatatattgagaaacatgaatgtgagatgactaatatacataatg 203  Q
    |||| |||||||||| ||| |||| ||||||| || || |||| | |||| |||| |||| |||||||||  | ||||||||||| ||||||||||||    
T  32976550 gagagatgttaatgtatcaagtgtgagttaaaattttatattgtatgcaatagtagatat-gagaaacatttaagtgagatgactcatatacataatg 32976454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 106 - 203
Target Start/End: Complemental strand, 42400462 - 42400366
Alignment:
Q  106 gagatatgttaatgtgtcatgtgtaagttaaacttctacattggaagcaaaagtatatattgagaaacatgaatgtgagatgactaatatacataatg 203  Q
    |||| |||||||||||||| |||| ||||||| || || |||| | |||| |||| ||| ||||||||||  | ||||||||||| | ||||||||||    
T  42400462 gagagatgttaatgtgtcacgtgtgagttaaaattttatattgtatgcaatagtagata-tgagaaacatttaagtgagatgactcacatacataatg 42400366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 201; Significance: 1e-110; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 4 - 240
Target Start/End: Complemental strand, 15277002 - 15276766
Alignment:
Q  4 tctataaaaccgataccatcccacattttttaacatgttgtgtctctgatcttatttggctctctcaccagatcagaaatatgaattgtctcacacgtaa 103  Q
    |||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |   ||||||||||| ||||    
T  15277002 tctataaaaccgataccaaccaacattttttaacatgttgtgtctctgatcttatttggctctctcaccagatcagaaacacagattgtctcacatgtaa 15276903  T
Q  104 cagagatatgttaatgtgtcatgtgtaagttaaacttctacattggaagcaaaagtatatattgagaaacatgaatgtgagatgactaatatacataatg 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15276902 cagagatatgttaatgtgtcatgtgtaagttaaacttctacattggaagcaaaagtatatattgagaaacatgaatgtgagatgactaatatacataatg 15276803  T
Q  204 tattaaggttttaggtgaagatgtgatgtccatctca 240  Q
    ||||||||||||||||||||||||| |||| ||||||    
T  15276802 tattaaggttttaggtgaagatgtggtgtcaatctca 15276766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 4 - 240
Target Start/End: Complemental strand, 15457371 - 15457135
Alignment:
Q  4 tctataaaaccgataccatcccacattttttaacatgttgtgtctctgatcttatttggctctctcaccagatcagaaatatgaattgtctcacacgtaa 103  Q
    |||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |   ||||||||||| ||||    
T  15457371 tctataaaaccgataccaaccaacattttttaacatgttgtgtctctgatcttatttggctctctcaccagatcagaaacacagattgtctcacatgtaa 15457272  T
Q  104 cagagatatgttaatgtgtcatgtgtaagttaaacttctacattggaagcaaaagtatatattgagaaacatgaatgtgagatgactaatatacataatg 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15457271 cagagatatgttaatgtgtcatgtgtaagttaaacttctacattggaagcaaaagtatatattgagaaacatgaatgtgagatgactaatatacataatg 15457172  T
Q  204 tattaaggttttaggtgaagatgtgatgtccatctca 240  Q
    ||||||||||||||||||||||||| |||| ||||||    
T  15457171 tattaaggttttaggtgaagatgtggtgtcaatctca 15457135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 106 - 238
Target Start/End: Complemental strand, 18431643 - 18431511
Alignment:
Q  106 gagatatgttaatgtgtcatgtgtaagttaaacttctacattggaagcaaaagtatatattgagaaacatgaatgtgagatgactaatatacataatgta 205  Q
    |||| ||||||||||||||||||| |||||||||||||  || || |||| ||||||||||||| |||||  || ||||||||| ||||||| ||||||     
T  18431643 gagagatgttaatgtgtcatgtgtgagttaaacttctaattttgatgcaagagtatatattgagcaacatatatttgagatgaccaatatacctaatgtc 18431544  T
Q  206 ttaaggttttaggtgaagatgtgatgtccatct 238  Q
    || |||||| || |  ||||||| |||||||||    
T  18431543 ttcaggtttgagatagagatgtggtgtccatct 18431511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 91 - 225
Target Start/End: Original strand, 45528178 - 45528312
Alignment:
Q  91 gtctcacacgtaacagagatatgttaatgtgtcatgtgtaagttaaacttctacattggaagcaaaagtatatattgagaaacatgaatgtgagatgact 190  Q
    ||||| ||||||| ||||  || ||||||| |||||| | ||||||| ||| || ||||| |||  ||||||||||||| |||||  |  |||||||||     
T  45528178 gtctcgcacgtaagagagggatattaatgtatcatgtatgagttaaatttcaacgttggatgcacgagtatatattgagcaacatataaatgagatgaca 45528277  T
Q  191 aatatacataatgtattaaggttttaggtgaagat 225  Q
    ||||||| |||||| ||||| |||| |||||||||    
T  45528278 aatatacctaatgtcttaagattttgggtgaagat 45528312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 113 - 215
Target Start/End: Complemental strand, 23141716 - 23141614
Alignment:
Q  113 gttaatgtgtcatgtgtaagttaaacttctacattggaagcaaaagtatatattgagaaacatgaatgtgagatgactaatatacataatgtattaaggt 212  Q
    ||||||||||||||||| | |||||||| ||||||  | | || |||| |||||||| |||||  | |||||||||||||||||   ||||| |||||||    
T  23141716 gttaatgtgtcatgtgtcatttaaacttatacattatatgtaagagtagatattgagcaacatacaagtgagatgactaatatatccaatgtcttaaggt 23141617  T
Q  213 ttt 215  Q
    |||    
T  23141616 ttt 23141614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 111 - 229
Target Start/End: Complemental strand, 42797360 - 42797242
Alignment:
Q  111 atgttaatgtgtcatgtgtaagttaaacttctacattggaagcaaaagtatatattgagaaacatgaatgtgagatgactaatatacataatgtattaag 210  Q
    |||||||||||||| |||| ||||||| |   |||||| | |||| ||||||| |||||||||||  | ||||||||||| || ||  |||||| |||||    
T  42797360 atgttaatgtgtcaagtgtgagttaaaataacacattgaatgcaatagtatatgttgagaaacatataagtgagatgactcatgtatctaatgtcttaag 42797261  T
Q  211 gttttaggtgaagatgtga 229  Q
     |||| ||||||| |||||    
T  42797260 attttgggtgaagttgtga 42797242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 92 - 155
Target Start/End: Original strand, 5685873 - 5685936
Alignment:
Q  92 tctcacacgtaacagagatatgttaatgtgtcatgtgtaagttaaacttctacattggaagcaa 155  Q
    |||||||| |||  |||| ||||||||||||||||||| ||||| | ||||||||||| |||||    
T  5685873 tctcacacttaaaggagagatgttaatgtgtcatgtgtgagttataattctacattggcagcaa 5685936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 229
Target Start/End: Original strand, 13756544 - 13756666
Alignment:
Q  107 agatatgttaatgtgtcatgtgtaagttaaacttctacattggaagcaaaagtatatattgagaaacatgaatgtgagatgactaatatacataatgtat 206  Q
    |||||||||||||||||| |||| ||||||| |   |||||| | |||| |||| || |||||||||||  | |||| |||||| || ||  |||||| |    
T  13756544 agatatgttaatgtgtcaagtgtgagttaaaataacacattgaatgcaatagtagatgttgagaaacatttaagtgaaatgactcatgtatctaatgtct 13756643  T
Q  207 taaggttttaggtgaagatgtga 229  Q
    |||| |||| ||||||| |||||    
T  13756644 taagattttgggtgaagttgtga 13756666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 147
Target Start/End: Original strand, 14715284 - 14715326
Alignment:
Q  105 agagatatgttaatgtgtcatgtgtaagttaaacttctacatt 147  Q
    ||||| |||||||||| |||||||| |||||||||||||||||    
T  14715284 agagagatgttaatgtttcatgtgtgagttaaacttctacatt 14715326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 128
Target Start/End: Complemental strand, 21585794 - 21585697
Alignment:
Q  30 tttttaacatgttgtgtctctgatcttatttggctctctcaccagatcagaaatatgaattgtctcacacgtaacagagatatgttaatgtgtcatgtg 128  Q
    |||||| ||||||||| |||||| |||||| |||| || |||||  ||| |||||| ||  ||||||||| ||| | ||| ||||||||||||||||||    
T  21585794 tttttaccatgttgtgcctctgaccttattaggctatcacaccaagtcacaaatataaagagtctcacacttaaaa-agagatgttaatgtgtcatgtg 21585697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 108 - 233
Target Start/End: Original strand, 17888049 - 17888174
Alignment:
Q  108 gatatgttaatgtgtcatgtgtaagttaaacttctacattggaagcaaaagtatatattgagaaacatgaatgtgagatgactaatatacataatgtatt 207  Q
    |||||||||||||||||  ||| ||||||  || |||| |||| | || |||| || ||||  |||||  | ||||||||||  | ||||||||||| ||    
T  17888049 gatatgttaatgtgtcaaatgtgagttaacattatacactggatggaagagtagattttgaacaacatataagtgagatgaccgaaatacataatgtctt 17888148  T
Q  208 aaggttttaggtgaagatgtgatgtc 233  Q
    ||||||||| || |||||||| ||||    
T  17888149 aaggttttatgtaaagatgtggtgtc 17888174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 200; Significance: 1e-109; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 14872617 - 14872856
Alignment:
Q  1 ttttctataaaaccgataccatcccacattttttaacatgttgtgtctctgatcttatttggctctctcaccagatcagaaatatgaattgtctcacacg 100  Q
    ||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| | ||||||||| |||    
T  14872617 ttttctataaaaccgataccaacccacattttttaacatgttgtatctctgatcttatttggctctctcaccagatcggaaatacggattgtctcatacg 14872716  T
Q  101 taacagagatatgttaatgtgtcatgtgtaagttaaacttctacattggaagcaaaagtatatattgagaaacatgaatgtgagatgactaatatacata 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14872717 taacagagatatgttaatgtgtcatgtgtaagttaaacttctacattggaagcaaaagtatatattgagaaacatgaatgtgagatgactaatatacata 14872816  T
Q  201 atgtattaaggttttaggtgaagatgtgatgtccatctca 240  Q
    |||||||||||  ||||||||||||||| |||| ||||||    
T  14872817 atgtattaaggagttaggtgaagatgtggtgtcaatctca 14872856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 14869645 - 14869839
Alignment:
Q  1 ttttctataaaaccgataccatcccacattttttaacatgttgtgtctctgatcttatttggctctctcaccagatcagaaatatgaattgtctcacacg 100  Q
    ||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| | ||||||||| |||    
T  14869645 ttttctataaaaccgataccaacccacattttttaacatgttgtatctctgatcttatttggctctctcaccagatcggaaatacggattgtctcatacg 14869744  T
Q  101 taacagagatatgttaatgtgtcatgtgtaagttaaacttctacattggaagcaaaagtatatattgagaaacatgaatgtgagatgactaatat 195  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14869745 taacagagatatgttaatgtgtcatgtgtaagttaaacttctacattggaagcaaaagtatatattgagaaacatgaatgtgagatgactaatat 14869839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 94 - 241
Target Start/End: Original strand, 45659128 - 45659276
Alignment:
Q  94 tcacacgtaacagagatatgttaatgtgtcatgtgtaagttaaacttctacattggaagcaaaagtatatattgagaaacatgaatgtgagatgactaat 193  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||    
T  45659128 tcacacgtaacagagatatgttaatgtgtcatgtgtaagttaaacttctaaattggaagcaaaaatatatattgagaaacatgaatgtgagatgactaat 45659227  T
Q  194 -atacataatgtattaaggttttaggtgaagatgtgatgtccatctcat 241  Q
     ||||||||||||||||||||||||||||||||||| |||| |||||||    
T  45659228 aatacataatgtattaaggttttaggtgaagatgtggtgtcaatctcat 45659276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 94 - 242
Target Start/End: Complemental strand, 45058553 - 45058404
Alignment:
Q  94 tcacacgtaacagagatatgttaatgtgtcatgtgtaagttaaacttctacattggaagcaaaagtatatattgagaaacatgaatgtgagatgactaat 193  Q
    |||||| ||| ||||||||||| |||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | |||    
T  45058553 tcacacataatagagatatgttgatgtgtcatgtgtcggttaaacttctacattggaagcaaaagtatatattgagaaacatgaaagtgagatggccaat 45058454  T
Q  194 atacataatgt-attaaggttttaggtgaagatgtgatgtccatctcatt 242  Q
    |||||||||||  || |||||||  |||||||||||||||| ||||||||    
T  45058453 atacataatgtctttcaggttttgagtgaagatgtgatgtcaatctcatt 45058404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 106 - 238
Target Start/End: Complemental strand, 3395532 - 3395400
Alignment:
Q  106 gagatatgttaatgtgtcatgtgtaagttaaacttctacattggaagcaaaagtatatattgagaaacatgaatgtgagatgactaatatacataatgta 205  Q
    |||| |||||||||||||| |||| ||||||| |   || ||| | |||| |||| || |||||||||||  | ||||||||||| |||||  ||||||     
T  3395532 gagagatgttaatgtgtcaggtgtgagttaaaataacactttgaatgcaatagtagatgttgagaaacatataagtgagatgactcatatatctaatgtc 3395433  T
Q  206 ttaaggttttaggtgaagatgtgatgtccatct 238  Q
    ||||| |||| ||||||| ||||||||| ||||    
T  3395432 ttaagattttgggtgaagttgtgatgtcaatct 3395400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 113 - 232
Target Start/End: Complemental strand, 5788171 - 5788052
Alignment:
Q  113 gttaatgtgtcatgtgtaagttaaacttctacattggaagcaaaagtatatattgagaaacatgaatgtgagatgactaatatacataatgtattaaggt 212  Q
    |||||||||||| |||| | |||||||||||||||  | | || ||||||||||||| |||||  | |||||||||| |||||||  || || |||||||    
T  5788171 gttaatgtgtcacgtgtgatttaaacttctacattatatgtaagagtatatattgagcaacatataagtgagatgacaaatatactcaaagtcttaaggt 5788072  T
Q  213 tttaggtgaagatgtgatgt 232  Q
    |||  ||  |||||||||||    
T  5788071 tttgagtttagatgtgatgt 5788052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 113 - 215
Target Start/End: Complemental strand, 41754081 - 41753979
Alignment:
Q  113 gttaatgtgtcatgtgtaagttaaacttctacattggaagcaaaagtatatattgagaaacatgaatgtgagatgactaatatacataatgtattaaggt 212  Q
    ||||||||||||||||| | |||||||| ||||||  | | || |||| |||||||| |||||  | |||||||||||||||||   ||||| |||||||    
T  41754081 gttaatgtgtcatgtgtcatttaaacttatacattatatgtaagagtagatattgagcaacatataagtgagatgactaatatatccaatgtcttaaggt 41753982  T
Q  213 ttt 215  Q
    |||    
T  41753981 ttt 41753979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 111 - 212
Target Start/End: Complemental strand, 29977435 - 29977334
Alignment:
Q  111 atgttaatgtgtcatgtgtaagttaaacttctacattggaagcaaaagtatatattgagaaacatgaatgtgagatgactaatatacataatgtattaag 210  Q
    |||||||||||||| |||||||||||| ||| |||||| | |||| |||  || |||| ||||||  | |||| |||||| |||||| |||||| |||||    
T  29977435 atgttaatgtgtcaagtgtaagttaaagttccacattgaatgcaagagtggatgttgataaacatataagtgatatgactcatatacctaatgtcttaag 29977336  T
Q  211 gt 212  Q
    ||    
T  29977335 gt 29977334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 111 - 238
Target Start/End: Original strand, 36720078 - 36720205
Alignment:
Q  111 atgttaatgtgtcatgtgtaagttaaacttctacattggaagcaaaagtatatattgagaaacatgaatgtgagatgactaatatacataatgtattaag 210  Q
    |||||||||||||| |||| ||||||| ||||||| ||   |||| | ||||| ||||| |||||  | |||||||||   |||||| |||||| | |||    
T  36720078 atgttaatgtgtcaagtgtgagttaaaattctacaatgtgtgcaataatatatgttgagcaacatataagtgagatgatccatatacctaatgtctgaag 36720177  T
Q  211 gttttaggtgaagatgtgatgtccatct 238  Q
      ||| ||||||||||||||||| ||||    
T  36720178 actttgggtgaagatgtgatgtcaatct 36720205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 112 - 215
Target Start/End: Complemental strand, 36727707 - 36727604
Alignment:
Q  112 tgttaatgtgtcatgtgtaagttaaacttctacattggaagcaaaagtatatattgagaaacatgaatgtgagatgactaatatacataatgtattaagg 211  Q
    |||||||||||||  ||| | ||||| ||  ||||| || ||||||||| || || ||||||||  |||||||||||||||||||  |||||| |||| |    
T  36727707 tgttaatgtgtcaattgtgacttaaaatttcacattagatgcaaaagtagatgttaagaaacatatatgtgagatgactaatatagctaatgtgttaaag 36727608  T
Q  212 tttt 215  Q
    ||||    
T  36727607 tttt 36727604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 96 - 203
Target Start/End: Complemental strand, 39839177 - 39839071
Alignment:
Q  96 acacgtaacagagatatgttaatgtgtcatgtgtaagttaaacttctacattggaagcaaaagtatatattgagaaacatgaatgtgagatgactaatat 195  Q
    |||| |||| |||| |||||||||||||| |||| ||||||| || || |||| | |||| |||| ||| ||||||||||  | ||||||||||| | ||    
T  39839177 acacttaacggagagatgttaatgtgtcaagtgtgagttaaaattttatattgtatgcaatagtagata-tgagaaacatttaagtgagatgactcacat 39839079  T
Q  196 acataatg 203  Q
    ||||||||    
T  39839078 acataatg 39839071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 238
Target Start/End: Complemental strand, 20106741 - 20106611
Alignment:
Q  108 gatatgttaatgtgtcatgtgtaagttaaacttctacattggaagcaaaagtatatattgagaaacatgaatgtgagatgactaatatacataatgtatt 207  Q
    |||||||||||||||||  ||| ||||||  || ||||||||| | || |||| || ||||  || ||  | |||||||||| || ||||||||||| ||    
T  20106741 gatatgttaatgtgtcaaatgtgagttaacgttatacattggatggaagagtagattttgaataaaatataagtgagatgaccaaaatacataatgtctt 20106642  T
Q  208 aaggttttaggtgaagatgtgatgtccatct 238  Q
    ||||||||| || || ||||| |||| ||||    
T  20106641 aaggttttatgtaaatatgtggtgtcaatct 20106611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 115 - 240
Target Start/End: Original strand, 6466926 - 6467051
Alignment:
Q  115 taatgtgtcatgtgtaagttaaacttctacattggaagcaaaagtatatattgagaaacatgaatgtgagatgactaatatacataatgtattaaggttt 214  Q
    ||||||||||| | | ||| ||||||||||||||||  ||| ||||||||||||| || ||  |  ||| ||||| ||||||  |||||| ||||| |||    
T  6466926 taatgtgtcatttatgagtaaaacttctacattggatccaagagtatatattgagcaagatataaatgaaatgacaaatataactaatgtcttaagtttt 6467025  T
Q  215 taggtgaagatgtgatgtccatctca 240  Q
    | | || ||||||| |||| ||||||    
T  6467026 tggatggagatgtggtgtcaatctca 6467051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 106 - 203
Target Start/End: Original strand, 19040704 - 19040800
Alignment:
Q  106 gagatatgttaatgtgtcatgtgtaagttaaacttctacattggaagcaaaagtatatattgagaaacatgaatgtgagatgactaatatacataatg 203  Q
    |||| |||||||||||||| |||| ||||||| || || |||| | |||| |||| ||| ||||||||||  | ||||||||||| | ||||||||||    
T  19040704 gagagatgttaatgtgtcaagtgtgagttaaaattttatattgtatgcaatagtagata-tgagaaacatttaagtgagatgactcacatacataatg 19040800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 109 - 166
Target Start/End: Original strand, 36720846 - 36720903
Alignment:
Q  109 atatgttaatgtgtcatgtgtaagttaaacttctacattggaagcaaaagtatatatt 166  Q
    ||||||||||||| |||| || |||||||||| || |||||| |||| ||||||||||    
T  36720846 atatgttaatgtgacatgcgtgagttaaacttttatattggatgcaagagtatatatt 36720903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 4 - 240
Target Start/End: Complemental strand, 24182682 - 24182446
Alignment:
Q  4 tctataaaaccgataccatcccacattttttaacatgttgtgtctctgatcttatttggctctctcaccagatcagaaatatgaattgtctcacacgtaa 103  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||   | |||||||||| |||    
T  24182682 tctataaaaccgataccaacccacattttttaacatgttgtgtctctgatcttatttggatctctcaccagatcagaaatacagaatgtctcacacataa 24182583  T
Q  104 cagagatatgttaatgtgtcatgtgtaagttaaacttctacattggaagcaaaagtatatattgagaaacatgaatgtgagatgactaatatacataatg 203  Q
     |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24182582 tagagatatgttaatgtgtcatgtgtaagttaaacttctacattgaaagcaaaagtatatattgagaaacatgaatgtgagatgactaatatacataatg 24182483  T
Q  204 tattaaggttttaggtgaagatgtgatgtccatctca 240  Q
    ||||||||||| ||||||||||||| |||| ||||||    
T  24182482 tattaaggtttcaggtgaagatgtggtgtcaatctca 24182446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 4 - 242
Target Start/End: Complemental strand, 28475074 - 28474835
Alignment:
Q  4 tctataaaaccgataccatcccacattttttaacatgttgtgtctctgatcttatttggctctctcaccagatcagaaatatgaattgtctcacacgtaa 103  Q
    |||||||||||   |||| |||||||||||||||||| | || |||||||||||||||||||||||||||||||||||||||| | |||||||||| |||    
T  28475074 tctataaaaccacaaccaacccacattttttaacatggtatgcctctgatcttatttggctctctcaccagatcagaaatatggactgtctcacacataa 28474975  T
Q  104 cagagatatgttaatgtgtcatgtgtaagttaaacttctacattggaagcaaaagtatatattgagaaacatgaatgtgagatgactaatatacataatg 203  Q
     ||||||||||| ||||||||||||| |||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| |||||||||||||||    
T  28474974 tagagatatgttgatgtgtcatgtgtgagttaaacttctacattgaaagcaaaagtatatattgagatacatgaatgtgagatggctaatatacataatg 28474875  T
Q  204 t-attaaggttttaggtgaagatgtgatgtccatctcatt 242  Q
    |  || |||||||  ||||||||||| |||| ||||||||    
T  28474874 tctttcaggttttgagtgaagatgtggtgtcaatctcatt 28474835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 29 - 227
Target Start/End: Original strand, 11560140 - 11560337
Alignment:
Q  29 ttttttaacatgttgtgtctctgatcttatttggctctctcaccagatcagaaatatgaattgtctcacacgtaacagagatatgttaatgtgtcatgtg 128  Q
    ||||||| ||||||||| ||||||  ||||||  || |||||||| |||| |||||| ||  ||| ||||| |||  |||| |||||||||||||||| |    
T  11560140 ttttttaccatgttgtgcctctgactttatttttctatctcaccaaatcacaaatataaagagtcccacacttaagggagagatgttaatgtgtcatggg 11560239  T
Q  129 taagttaaacttctacattggaagcaaaagtatatattgagaaacatgaatgtgagatgactaatatacataatgtattaaggttttaggtgaagatgt 227  Q
    | |||||||||| ||||||||| |||| ||||||||||||  || ||  | |||||||||| ||||||| | |||| ||||||||||| ||||||||||    
T  11560240 tgagttaaacttatacattggatgcaagagtatatattga-caatatatacgtgagatgacaaatatacttgatgtcttaaggttttaagtgaagatgt 11560337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 25 - 240
Target Start/End: Complemental strand, 42756982 - 42756767
Alignment:
Q  25 cacattttttaacatgttgtgtctctgatcttatttggctctctcaccagatcagaaatatgaattgtctcacacgtaacagagatatgttaatgtgtca 124  Q
    ||||||||||| ||||||||  |||| |||||||||  || |||||||| |||| | | | | |   |||||||| |||  |||| ||||||||||||||    
T  42756982 cacattttttaccatgttgttcctcttatcttatttttctatctcaccatatcatagacacggagaatctcacacttaagggagagatgttaatgtgtca 42756883  T
Q  125 tgtgtaagttaaacttctacattggaagcaaaagtatatattgagaaacatgaatgtgagatgactaatatacataatgtattaaggttttaggtgaaga 224  Q
    | ||| ||| |||||||||||||||| |||| | ||||||||||| |||||  | || | ||||| ||||||| ||| || |||||||||| | ||||||    
T  42756882 tttgtgagtaaaacttctacattggatgcaagactatatattgagcaacatataagttaaatgacaaatatacctaaagtcttaaggttttggatgaaga 42756783  T
Q  225 tgtgatgtccatctca 240  Q
    |||| |||| ||||||    
T  42756782 tgtggtgtcaatctca 42756767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 91 - 240
Target Start/End: Complemental strand, 35648672 - 35648523
Alignment:
Q  91 gtctcacacgtaacagagatatgttaatgtgtcatgtgtaagttaaacttctacattggaagcaaaagtatatattgagaaacatgaatgtgagatgact 190  Q
    |||||||||||||  |||| ||||| |||| |||||||| |||||||||||||||||| |||||| ||||||||||||| |||||  | | |||| ||      
T  35648672 gtctcacacgtaagggagagatgtttatgtttcatgtgtgagttaaacttctacattgtaagcaatagtatatattgagcaacatataagcgagaagaac 35648573  T
Q  191 aatatacataatgtattaaggttttaggtgaagatgtgatgtccatctca 240  Q
    ||||||| |||||  ||||| ||||| || |||||||| |||| ||||||    
T  35648572 aatatacctaatgccttaagattttacgtaaagatgtggtgtcaatctca 35648523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 18 - 128
Target Start/End: Original strand, 39977947 - 39978056
Alignment:
Q  18 accatcccacattttttaacatgttgtgtctctgatcttatttggctctctcaccagatcagaaatatgaattgtctcacacgtaacagagatatgttaa 117  Q
    |||| ||||| ||||||| ||||||||| |||||| |||||| |||| || |||||  ||| |||||| ||  ||||||||| ||| | ||| |||||||    
T  39977947 accaacccaccttttttaccatgttgtgcctctgaccttattaggctatcacaccaagtcacaaatataaagagtctcacacttaaaa-agagatgttaa 39978045  T
Q  118 tgtgtcatgtg 128  Q
    |||||||||||    
T  39978046 tgtgtcatgtg 39978056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 109 - 145
Target Start/End: Original strand, 17450111 - 17450147
Alignment:
Q  109 atatgttaatgtgtcatgtgtaagttaaacttctaca 145  Q
    ||||||||||||||||||||| |||||||||||||||    
T  17450111 atatgttaatgtgtcatgtgtgagttaaacttctaca 17450147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 160
Target Start/End: Original strand, 285019 - 285154
Alignment:
Q  24 ccacattttttaacatgttgtgtctctgatcttatttggctctctcaccagatcagaaatatgaattgtctcacacgtaacagagatatgttaatgtgtc 123  Q
    |||| ||||||| || |||||| |||||| |||||| |||| ||||||||  ||| |||||  ||   |||||||| ||| | ||| ||||||||| |||    
T  285019 ccaccttttttaccaagttgtgcctctgaccttattaggctatctcaccaagtcacaaatacaaagaatctcacacttaaaa-agagatgttaatgcgtc 285117  T
Q  124 atgtgtaagttaaacttctacattggaagcaaaagta 160  Q
    |||||  |||||||||||||  ||||| |||| ||||    
T  285118 atgtgagagttaaacttctaggttggatgcaagagta 285154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 238
Target Start/End: Original strand, 13228699 - 13228830
Alignment:
Q  106 gagatatgttaatgtgtcatgtgtaagttaaacttctacattggaagcaaaagtatatattgagaaacatgaatgtgagatgactaatatacataatgta 205  Q
    |||| |||||||||||||| |||| ||||||| |   |||||| | |||| |||| || |||||||||||  | ||||||||||| |||||  |||| |     
T  13228699 gagagatgttaatgtgtcaagtgtgagttaaaataacacattgaatgcaatagtagatgttgagaaacatataagtgagatgactcatatatctaat-tc 13228797  T
Q  206 ttaaggttttaggtgaagatgtgatgtccatct 238  Q
    ||||  |||| ||||||| ||||||||| ||||    
T  13228798 ttaaaattttgggtgaagttgtgatgtcaatct 13228830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 16852803 - 16853025
Alignment:
Q  18 accatcccacattttttaacatgttgtgtctctgatcttatttggctctctcaccagatcagaaatatgaattgtctcacacgtaacagagatatgttaa 117  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | ||||||||||| ||||||||||||||||||    
T  16852803 accaacccacattttttaacatgttgtgtctctgatcttatttggctctctcaccatatcagaaatacggattgtctcacaagtaacagagatatgttaa 16852902  T
Q  118 tgtgtcatgtgtaagttaaacttctacattggaagcaaaagtatatattgagaaacatgaatgtgagatgactaatatacataatgtattaaggttttag 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  16852903 tgtgtcatgtgtaagttaaacttctacattggaagcaaaagtatatattgagaaacatgaatgtgagatgactaatatacataatgtattaaggttttaa 16853002  T
Q  218 gtgaagatgtgatgtccatctca 240  Q
    | ||||||||| |||| ||||||    
T  16853003 gggaagatgtggtgtcaatctca 16853025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 23 - 240
Target Start/End: Complemental strand, 31089706 - 31089488
Alignment:
Q  23 cccacattttttaacatgttgtgtctctgatcttatttggctctctcaccagatcagaaatatgaattgtctcacacgtaacagagatatgttaatgtgt 122  Q
    ||||||||||||| | ||||||  |||| | |||||| | || ||||||||||||| ||| |  ||   |||||||| |||  |||||||||||||||||    
T  31089706 cccacattttttaccctgttgtacctctaaccttattcgactatctcaccagatcacaaacacaaaaaatctcacacttaagggagatatgttaatgtgt 31089607  T
Q  123 catgtgtaagttaaacttctacattggaagcaaaagtatatattgagaaacatgaatgtgagatgactaatatacataatgtattaag-gttttaggtga 221  Q
    ||| ||||||||||| |||||||||||| | || ||||||| ||||| |||||  | | |||||||  ||||||| |||||| | |||  |||| |||||    
T  31089606 catatgtaagttaaatttctacattggatgaaagagtatattttgagcaacatataagcgagatgatcaatatacctaatgtctgaagtttttttggtga 31089507  T
Q  222 agatgtgatgtccatctca 240  Q
     |||||| |||| ||||||    
T  31089506 ggatgtggtgtcaatctca 31089488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 101 - 238
Target Start/End: Complemental strand, 43387184 - 43387047
Alignment:
Q  101 taacagagatatgttaatgtgtcatgtgtaagttaaacttctacattggaagcaaaagtatatattgagaaacatgaatgtgagatgactaatatacata 200  Q
    ||||||||| |||||||||||||| |||| ||||||| ||  |||||| | |||| |||| || |||||||||||  | |||| ||||||  ||||  ||    
T  43387184 taacagagagatgttaatgtgtcaagtgtgagttaaaattacacattgaatgcaatagtagatgttgagaaacatataagtgaaatgactcgtatatcta 43387085  T
Q  201 atgtattaaggttttaggtgaagatgtgatgtccatct 238  Q
    |||| ||||| |||| ||||||| ||||||||| ||||    
T  43387084 atgtcttaagattttgggtgaagttgtgatgtcaatct 43387047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 142 - 198
Target Start/End: Complemental strand, 6846911 - 6846855
Alignment:
Q  142 tacattggaagcaaaagtatatattgagaaacatgaatgtgagatgactaatataca 198  Q
    ||||||| ||| |||||||||||||||||||||||||||||| ||| | ||||||||    
T  6846911 tacattgaaagtaaaagtatatattgagaaacatgaatgtgaaatggccaatataca 6846855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 106 - 203
Target Start/End: Complemental strand, 20306812 - 20306716
Alignment:
Q  106 gagatatgttaatgtgtcatgtgtaagttaaacttctacattggaagcaaaagtatatattgagaaacatgaatgtgagatgactaatatacataatg 203  Q
    |||| |||||||||||||| |||| ||||||| || || |||| | |||| |||| |||| |||||||||  | ||||||||||| ||||||||||||    
T  20306812 gagagatgttaatgtgtcaagtgtgagttaaaattttatattgtatgcaatagtagatat-gagaaacatttaagtgagatgactcatatacataatg 20306716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 123 - 168
Target Start/End: Original strand, 27342216 - 27342261
Alignment:
Q  123 catgtgtaagttaaacttctacattggaagcaaaagtatatattga 168  Q
    ||||||| |||||||||||||||||||| |||| ||||||||||||    
T  27342216 catgtgtgagttaaacttctacattggatgcaatagtatatattga 27342261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 106 - 202
Target Start/End: Complemental strand, 30001821 - 30001726
Alignment:
Q  106 gagatatgttaatgtgtcatgtgtaagttaaacttctacattggaagcaaaagtatatattgagaaacatgaatgtgagatgactaatatacataat 202  Q
    |||| |||||||||||||| |||||||||||| || || |||| | |||| |||| ||| ||||||||||  | ||||||||||| | |||||||||    
T  30001821 gagagatgttaatgtgtcaagtgtaagttaaaattttatattgtatgcaatagtagata-tgagaaacatttaagtgagatgactcacatacataat 30001726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 106 - 203
Target Start/End: Original strand, 40946526 - 40946622
Alignment:
Q  106 gagatatgttaatgtgtcatgtgtaagttaaacttctacattggaagcaaaagtatatattgagaaacatgaatgtgagatgactaatatacataatg 203  Q
    |||| |||||||||||||| |||| ||||||| || || |||| | |||| |||| ||| ||||||||||  | ||||||||||| | ||||||||||    
T  40946526 gagagatgttaatgtgtcaagtgtgagttaaaattttatattgtatgcaatagtagata-tgagaaacatttaagtgagatgactcacatacataatg 40946622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 240
Target Start/End: Original strand, 16853689 - 16853749
Alignment:
Q  180 gtgagatgactaatatacataatgtattaaggttttaggtgaagatgtgatgtccatctca 240  Q
    |||||||||  |||||||||||||  |||||||||| ||||| |||||| |||| ||||||    
T  16853689 gtgagatgatcaatatacataatgctttaaggttttgggtgatgatgtggtgtcaatctca 16853749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0191 (Bit Score: 133; Significance: 3e-69; HSPs: 1)
Name: scaffold0191
Description:

Target: scaffold0191; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 23 - 203
Target Start/End: Original strand, 5835 - 6015
Alignment:
Q  23 cccacattttttaacatgttgtgtctctgatcttatttggctctctcaccagatcagaaatatgaattgtctcacacgtaacagagatatgttaatgtgt 122  Q
    |||||||||||||||||||| || ||||||||||||||||||||||||||| |||||||||| | |||||||||||| ||| ||||||||||| ||||||    
T  5835 cccacattttttaacatgttatgcctctgatcttatttggctctctcaccaaatcagaaatacggattgtctcacacataatagagatatgttgatgtgt 5934  T
Q  123 catgtgtaagttaaacttctacattggaagcaaaagtatatattgagaaacatgaatgtgagatgactaatatacataatg 203  Q
    ||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | |||||||||||||    
T  5935 catgtgtgagttaaacttctacattgaaagcaaaagtatatattgagaaacatgaatgtgagatggccaatatacataatg 6015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 116; Significance: 4e-59; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 35 - 166
Target Start/End: Original strand, 6188699 - 6188830
Alignment:
Q  35 aacatgttgtgtctctgatcttatttggctctctcaccagatcagaaatatgaattgtctcacacgtaacagagatatgttaatgtgtcatgtgtaagtt 134  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||    
T  6188699 aacatgttgtgtctctgatcttatttggctctttcaccagatcagaaatactgattgtctcacacgtaacagagatatgttaatgtgtcatgtgtaagtt 6188798  T
Q  135 aaacttctacattggaagcaaaagtatatatt 166  Q
    ||||||||||||||||||||||||||||||||    
T  6188799 aaacttctacattggaagcaaaagtatatatt 6188830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 35 - 166
Target Start/End: Original strand, 6195215 - 6195346
Alignment:
Q  35 aacatgttgtgtctctgatcttatttggctctctcaccagatcagaaatatgaattgtctcacacgtaacagagatatgttaatgtgtcatgtgtaagtt 134  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||    
T  6195215 aacatgttgtgtctctgatcttatttggctctttcaccagatcagaaatactgattgtctcacacgtaacagagatatgttaatgtgtcatgtgtaagtt 6195314  T
Q  135 aaacttctacattggaagcaaaagtatatatt 166  Q
    ||||||||||||||||||||||||||||||||    
T  6195315 aaacttctacattggaagcaaaagtatatatt 6195346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 158 - 239
Target Start/End: Original strand, 6189844 - 6189925
Alignment:
Q  158 gtatatattgagaaacatgaatgtgagatgactaatatacataatgtattaaggttttaggtgaagatgtgatgtccatctc 239  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| |||| |||||    
T  6189844 gtatatattgagaaacatgaatgtgagatgactaatatatataatgtattaaggctttaggtgaagatgtggtgtcaatctc 6189925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 23 - 168
Target Start/End: Original strand, 24709121 - 24709266
Alignment:
Q  23 cccacattttttaacatgttgtgtctctgatcttatttggctctctcaccagatcagaaatatgaattgtctcacacgtaacagagatatgttaatgtgt 122  Q
    |||| |||||||| ||||||||  |||| | |||||||| || |||||| |||||| | |||   |  || |||||| |||  || ||||||||||||||    
T  24709121 cccatattttttatcatgttgtacctctaaccttatttgactatctcacaagatcacatatacataaagtttcacacttaagggaaatatgttaatgtgt 24709220  T
Q  123 catgtgtaagttaaacttctacattggaagcaaaagtatatattga 168  Q
    ||||||||||||||| |||||||||  | |||||||||||||||||    
T  24709221 catgtgtaagttaaatttctacattaaatgcaaaagtatatattga 24709266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 105 - 238
Target Start/End: Complemental strand, 4110443 - 4110312
Alignment:
Q  105 agagatatgttaatgtgtcatgtgtaagttaaacttctacattggaagcaaaagtatatattgagaaacatgaatgtgagatgactaatatacataatgt 204  Q
    ||||| ||||||||||||||| ||   |||||||| |||||||| | |||| ||||||||||||| |||||| | |||||||||  ||| |||||||| |    
T  4110443 agagaaatgttaatgtgtcatatgg--gttaaactactacattgaatgcaatagtatatattgagcaacatgtaagtgagatgatcaatttacataatat 4110346  T
Q  205 attaaggttttaggtgaagatgtgatgtccatct 238  Q
     |||||||||||| || | ||||| |||| ||||    
T  4110345 cttaaggttttagatggaaatgtggtgtcaatct 4110312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 111 - 188
Target Start/End: Complemental strand, 42079039 - 42078960
Alignment:
Q  111 atgttaatgtgtcatgtgtaagttaaacttc--tacattggaagcaaaagtatatattgagaaacatgaatgtgagatga 188  Q
    ||||||||||||||||||| |||||||||||  |||||| || |||| |||| |||||||| |||||| | |||||||||    
T  42079039 atgttaatgtgtcatgtgtgagttaaacttctatacatttgatgcaagagtagatattgagcaacatgtaagtgagatga 42078960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 111 - 230
Target Start/End: Complemental strand, 6677207 - 6677088
Alignment:
Q  111 atgttaatgtgtcatgtgtaagttaaacttctacattggaagcaaaagtatatattgagaaacatgaatgtgagatgactaatatacataatgtattaag 210  Q
    |||||||| ||| | |||| ||||||| ||||| |||| | | ||| ||| || ||||  |||||  ||||||||||||| ||||||  ||||| |||||    
T  6677207 atgttaatttgttaagtgtgagttaaaattctatattgaatgaaaaggtaaattttgaacaacatatatgtgagatgactcatataccaaatgtcttaag 6677108  T
Q  211 gttttaggtgaagatgtgat 230  Q
    ||||||| ||||||||||||    
T  6677107 gttttagatgaagatgtgat 6677088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 105 - 238
Target Start/End: Complemental strand, 17474752 - 17474619
Alignment:
Q  105 agagatatgttaatgtgtcatgtgtaagttaaacttctacattggaagcaaaagtatatattgagaaacatgaatgtgagatgactaatatacataatgt 204  Q
    ||||| || |||||| ||| ||||| |||||||||||||| || || |||| ||||||||||||  |||||   ||||||||| | ||||||| |||| |    
T  17474752 agagagatattaatgcgtcgtgtgtgagttaaacttctacttttgatgcaagagtatatattgaacaacatatttgtgagatggcaaatatacctaatat 17474653  T
Q  205 attaaggttttaggtgaagatgtgatgtccatct 238  Q
     || ||||||  | || ||||||| |||||||||    
T  17474652 cttcaggtttcggatggagatgtggtgtccatct 17474619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 105 - 238
Target Start/End: Complemental strand, 17510236 - 17510103
Alignment:
Q  105 agagatatgttaatgtgtcatgtgtaagttaaacttctacattggaagcaaaagtatatattgagaaacatgaatgtgagatgactaatatacataatgt 204  Q
    ||||| || |||||| ||| ||||| |||||||||||||| || || |||| ||||||||||||  |||||   ||||||||| | ||||||| |||| |    
T  17510236 agagagatattaatgcgtcgtgtgtgagttaaacttctacttttgatgcaagagtatatattgaacaacatatttgtgagatggccaatatacctaatat 17510137  T
Q  205 attaaggttttaggtgaagatgtgatgtccatct 238  Q
     || ||||||  | || ||||||| |||||||||    
T  17510136 cttcaggtttcggatggagatgtggtgtccatct 17510103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 105 - 238
Target Start/End: Original strand, 17542978 - 17543111
Alignment:
Q  105 agagatatgttaatgtgtcatgtgtaagttaaacttctacattggaagcaaaagtatatattgagaaacatgaatgtgagatgactaatatacataatgt 204  Q
    ||||| || |||||| ||| ||||| |||||||||||||| || || |||| ||||||||||||  |||||   ||||||||| | ||||||| |||| |    
T  17542978 agagagatattaatgcgtcgtgtgtgagttaaacttctacttttgatgcaagagtatatattgaacaacatatttgtgagatggccaatatacctaatat 17543077  T
Q  205 attaaggttttaggtgaagatgtgatgtccatct 238  Q
     || ||||||  | || ||||||| |||||||||    
T  17543078 cttcaggtttcggatggagatgtggtgtccatct 17543111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 105 - 238
Target Start/End: Original strand, 17578462 - 17578595
Alignment:
Q  105 agagatatgttaatgtgtcatgtgtaagttaaacttctacattggaagcaaaagtatatattgagaaacatgaatgtgagatgactaatatacataatgt 204  Q
    ||||| || |||||| ||| ||||| |||||||||||||| || || |||| ||||||||||||  |||||   ||||||||| | ||||||| |||| |    
T  17578462 agagagatattaatgcgtcgtgtgtgagttaaacttctacttttgatgcaagagtatatattgaacaacatatttgtgagatggcaaatatacctaatat 17578561  T
Q  205 attaaggttttaggtgaagatgtgatgtccatct 238  Q
     || ||||||  | || ||||||| |||||||||    
T  17578562 cttcaggtttcggatggagatgtggtgtccatct 17578595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 91 - 147
Target Start/End: Complemental strand, 26373964 - 26373908
Alignment:
Q  91 gtctcacacgtaacagagatatgttaatgtgtcatgtgtaagttaaacttctacatt 147  Q
    ||||||||  ||| ||||| ||||||||||||||||||| ||||||| |||||||||    
T  26373964 gtctcacagttaaaagagaaatgttaatgtgtcatgtgtgagttaaaattctacatt 26373908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 196 - 233
Target Start/End: Complemental strand, 46905073 - 46905036
Alignment:
Q  196 acataatgtattaaggttttaggtgaagatgtgatgtc 233  Q
    ||||||||| |||||||||||||||||||||| |||||    
T  46905073 acataatgttttaaggttttaggtgaagatgtaatgtc 46905036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 61
Target Start/End: Complemental strand, 4110525 - 4110489
Alignment:
Q  25 cacattttttaacatgttgtgtctctgatcttatttg 61  Q
    |||||||||||||||||||||||||  ||||||||||    
T  4110525 cacattttttaacatgttgtgtctcgaatcttatttg 4110489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 240
Target Start/End: Complemental strand, 18290481 - 18290421
Alignment:
Q  180 gtgagatgactaatatacataatgtattaaggttttaggtgaagatgtgatgtccatctca 240  Q
    ||||||||||  | ||||||||||| ||||||||||| || |||||||| |||| ||||||    
T  18290481 gtgagatgaccgaaatacataatgtcttaaggttttatgtaaagatgtggtgtcaatctca 18290421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 95; Significance: 1e-46; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 109 - 242
Target Start/End: Complemental strand, 34515226 - 34515092
Alignment:
Q  109 atatgttaatgtgtcatgtgtaagttaaacttctacattggaagcaaaagtatatattgagaaacatgaatgtgagatgactaatatacataatgt-att 207  Q
    ||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||  ||    
T  34515226 atatgttaatgtgtcatgtgtcagttaaacttctacattgaaagcaaaagtatatattgagaaacatgaatgtgagatgaccaatatacataatgtcttt 34515127  T
Q  208 aaggttttaggtgaagatgtgatgtccatctcatt 242  Q
     |||||||  |||||||||||||||| ||||||||    
T  34515126 caggttttgagtgaagatgtgatgtcaatctcatt 34515092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 29 - 230
Target Start/End: Complemental strand, 26596887 - 26596686
Alignment:
Q  29 ttttttaacatgttgtgtctctgatcttatttggctctctcaccagatcagaaa--tatgaattgtctcacacgtaacagagatatgttaatgtgtcatg 126  Q
    ||||||| ||||||||| ||||||  |||| ||||| ||||||||||||| |||  ||||||  ||||||||  | |  |||| ||||| |||| |||||    
T  26596887 ttttttatcatgttgtgcctctgaatttatgtggctatctcaccagatcacaaacatatgaa--gtctcacatttcagggagagatgtttatgtatcatg 26596790  T
Q  127 tgtaagttaaacttctacattggaagcaaaagtatatattgagaaacatgaatgtgagatgactaatatacataatgtattaaggttttaggtgaagatg 226  Q
    ||| | |||||||||||||||||  |||| || |||||||||| ||||   | | |||||||  ||||||| |||||| |||||  |||||| |||||||    
T  26596789 tgtgacttaaacttctacattggctgcaatagaatatattgagtaacaattaagcgagatgaaaaatatacctaatgtcttaagagtttaggcgaagatg 26596690  T
Q  227 tgat 230  Q
    ||||    
T  26596689 tgat 26596686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 105 - 238
Target Start/End: Original strand, 24397915 - 24398047
Alignment:
Q  105 agagatatgttaatgtgtcatgtgtaagttaaacttctacattggaagcaaaagtatatattgagaaacatgaatgtgagatgactaatatacataatgt 204  Q
    ||||| || |||||||||||||||| |||||| |||||||||| || | |  ||||||||||||| |||||  |  ||||||||||||||||  ||||||    
T  24397915 agagagatattaatgtgtcatgtgtgagttaa-cttctacattagacgaattagtatatattgagcaacatataaatgagatgactaatatatctaatgt 24398013  T
Q  205 attaaggttttaggtgaagatgtgatgtccatct 238  Q
      |||| |||| |||||||| |||||||| ||||    
T  24398014 cgtaagattttgggtgaagaggtgatgtcaatct 24398047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 105 - 150
Target Start/End: Original strand, 4852807 - 4852852
Alignment:
Q  105 agagatatgttaatgtgtcatgtgtaagttaaacttctacattgga 150  Q
    ||||| ||||||||||||||||||| |||||| |||||||||||||    
T  4852807 agagagatgttaatgtgtcatgtgtgagttaaccttctacattgga 4852852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 105 - 150
Target Start/End: Complemental strand, 11554471 - 11554426
Alignment:
Q  105 agagatatgttaatgtgtcatgtgtaagttaaacttctacattgga 150  Q
    ||||| ||||||||||||||||||| |||||| |||||||||||||    
T  11554471 agagagatgttaatgtgtcatgtgtgagttaaccttctacattgga 11554426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 223
Target Start/End: Original strand, 1599688 - 1599806
Alignment:
Q  105 agagatatgttaatgtgtcatgtgtaagttaaacttctacattggaagcaaaagtatatattgagaaacatgaatgtgagatgactaatatacataatgt 204  Q
    ||||| |||||||||||||| |||| ||||||| |   |||||| | |||| |||| || |||||||||||  | ||||||||||| || ||  ||||||    
T  1599688 agagagatgttaatgtgtcaagtgtgagttaaaataacacattgaatgcaatagtagatgttgagaaacatataagtgagatgactcatgtatctaatgt 1599787  T
Q  205 attaaggttttaggtgaag 223  Q
     ||||| |||| |||||||    
T  1599788 cttaagattttgggtgaag 1599806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 215
Target Start/End: Original strand, 1599848 - 1599950
Alignment:
Q  113 gttaatgtgtcatgtgtaagttaaacttctacattggaagcaaaagtatatattgagaaacatgaatgtgagatgactaatatacataatgtattaaggt 212  Q
    ||||||||||||||||| | |||||||| ||||||  | | || |||| |||||||| |||||  |  ||||||||||||||||   ||||| |||||||    
T  1599848 gttaatgtgtcatgtgtcatttaaacttatacattatatgtaagagtagatattgagcaacatataaatgagatgactaatatatccaatgtcttaaggt 1599947  T
Q  213 ttt 215  Q
    |||    
T  1599948 ttt 1599950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 106 - 203
Target Start/End: Complemental strand, 7428564 - 7428468
Alignment:
Q  106 gagatatgttaatgtgtcatgtgtaagttaaacttctacattggaagcaaaagtatatattgagaaacatgaatgtgagatgactaatatacataatg 203  Q
    |||| |||||||||||||| |||| ||||||| || || |||| | |||| |||| ||| ||||||||||  | ||||||||||| | ||||||||||    
T  7428564 gagagatgttaatgtgtcaagtgtgagttaaaattttatattgtatgcaatagtagata-tgagaaacatttaagtgagatgactcacatacataatg 7428468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 106 - 163
Target Start/End: Complemental strand, 26597676 - 26597619
Alignment:
Q  106 gagatatgttaatgtgtcatgtgtaagttaaacttctacattggaagcaaaagtatat 163  Q
    |||| |||||||| ||||| |||| || |||| |||||||||| ||||||||||||||    
T  26597676 gagagatgttaatatgtcaagtgtgagctaaaattctacattgtaagcaaaagtatat 26597619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 111 - 188
Target Start/End: Original strand, 28365737 - 28365813
Alignment:
Q  111 atgttaatgtgtcatgtgtaagttaaacttctacattggaagcaaaagtatatattgagaaacatgaatgtgagatga 188  Q
    |||||||||||||| |||||||||||| || || |||| | |||| |||||||| ||||||||||  | |||||||||    
T  28365737 atgttaatgtgtcaagtgtaagttaaaattttatattgtatgcaatagtatata-tgagaaacatttaagtgagatga 28365813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 203
Target Start/End: Complemental strand, 16279154 - 16279063
Alignment:
Q  111 atgttaatgtgtcatgtgtaagttaaacttctacattggaagcaaaagtatatattgagaaacatgaatgtgagatgactaatatacataatg 203  Q
    |||||||||||||| |||||||||||| || || |||| | |||| |||| ||| ||||||||||  | ||||||||||| | || |||||||    
T  16279154 atgttaatgtgtcaagtgtaagttaaaattttatattgtatgcaatagtagata-tgagaaacatttaagtgagatgactcacatgcataatg 16279063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 29 - 165
Target Start/End: Complemental strand, 46544 - 46408
Alignment:
Q  29 ttttttaacatgttgtgtctctgatcttatttggctctctcaccagatcagaaatatgaattgtctcacacgtaacagagatatgttaatgtgtcatgtg 128  Q
    ||||||| ||||||||| |||||||| |||||| || |||||||| |||| ||| |   |  ||||||||| || || | | |||||||||||| ||| |    
T  46544 ttttttatcatgttgtgcctctgatcatatttgtctatctcaccaaatcacaaacacataaagtctcacacttagcaaatagatgttaatgtgtaatgcg 46445  T
Q  129 taagttaaacttctacattggaagcaaaagtatatat 165  Q
    | ||||||||||||||||||||||||| | |||||||    
T  46444 tgagttaaacttctacattggaagcaagaatatatat 46408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 105 - 238
Target Start/End: Original strand, 30838 - 30970
Alignment:
Q  105 agagatatgttaatgtgtcatgtgtaagttaaacttctacattggaagcaaaagtatatattgagaaacatgaatgtgagatgactaatatacataatgt 204  Q
    ||||| || |||||||||||||||| |||||| |||||||||| |  || | ||||||||||||| |||||  |  ||||||||||||||||  ||||||    
T  30838 agagagatattaatgtgtcatgtgtgagttaa-cttctacattaggtgcgatagtatatattgagcaacatataaatgagatgactaatatatctaatgt 30936  T
Q  205 attaaggttttaggtgaagatgtgatgtccatct 238  Q
      |||| |||| |||||||| |||||||| ||||    
T  30937 cataagattttgggtgaagaggtgatgtcaatct 30970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1312 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold1312
Description:

Target: scaffold1312; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 117 - 240
Target Start/End: Original strand, 2 - 125
Alignment:
Q  117 atgtgtcatgtgtaagttaaacttctacattggaagcaaaagtatatattgagaaacatgaatgtgagatgactaatatacataatgtattaaggtttta 216  Q
    |||| |||||||| |||||||||||||||||| | |||| ||||||||||||| |||||  | | |||| ||  ||||||| |||||  ||||| |||||    
T  2 atgtttcatgtgtgagttaaacttctacattgtatgcaatagtatatattgagcaacatataagcgagaagaacaatatacctaatgccttaagatttta 101  T
Q  217 ggtgaagatgtgatgtccatctca 240  Q
     || |||||||| |||| ||||||    
T  102 cgtaaagatgtggtgtcaatctca 125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0159 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0159
Description:

Target: scaffold0159; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 113 - 232
Target Start/End: Complemental strand, 32544 - 32425
Alignment:
Q  113 gttaatgtgtcatgtgtaagttaaacttctacattggaagcaaaagtatatattgagaaacatgaatgtgagatgactaatatacataatgtattaaggt 212  Q
    |||||||||||| |||| | |||||||||||||||  | | || ||||||||||||| |||||  | |||||||||| |||||||  || || |||||||    
T  32544 gttaatgtgtcacgtgtgatttaaacttctacattatatgtaagagtatatattgagcaacatataagtgagatgacaaatatactcaaagtcttaaggt 32445  T
Q  213 tttaggtgaagatgtgatgt 232  Q
    |||  ||  |||||||||||    
T  32444 tttgagtttagatgtgatgt 32425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 109 - 224
Target Start/End: Complemental strand, 128369 - 128254
Alignment:
Q  109 atatgttaatgtgtcatgtgtaagttaaacttctacattggaagcaaaagtatatattgagaaacatgaatgtgagatgactaatatacataatgtatta 208  Q
    ||||||| ||||||||||||| ||||||| ||| | |||||  |||  ||||||||||||| |||||  | ||||||| |  |||||| ||| ||| |||    
T  128369 atatgtttatgtgtcatgtgtgagttaaaattccatattggctgcagtagtatatattgagtaacatataagtgagataaaaaatatatatattgtctta 128270  T
Q  209 aggttttaggtgaaga 224  Q
    |||||||||| |||||    
T  128269 aggttttaggcgaaga 128254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 106 - 240
Target Start/End: Complemental strand, 38016012 - 38015878
Alignment:
Q  106 gagatatgttaatgtgtcatgtgtaagttaaacttctacattggaagcaaaagtatatattgagaaacatgaatgtgagatgactaatatacataatgta 205  Q
    |||| |||||||||||||| |||| ||||||| |   |||||| | |||| |||| || ||||| |||||  | ||||||||||| |||||  |||||      
T  38016012 gagagatgttaatgtgtcaagtgtgagttaaaataacacattgaatgcaatagtagatgttgagcaacatataagtgagatgactcatatatctaatgac 38015913  T
Q  206 ttaaggttttaggtgaagatgtgatgtccatctca 240  Q
    ||||| |||| ||||||| ||||||||| ||||||    
T  38015912 ttaagattttgggtgaagttgtgatgtcaatctca 38015878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 106 - 169
Target Start/End: Original strand, 9048627 - 9048690
Alignment:
Q  106 gagatatgttaatgtgtcatgtgtaagttaaacttctacattggaagcaaaagtatatattgag 169  Q
    |||| |||||||||||| || ||| ||||||||||||| || ||| ||||||||| ||||||||    
T  9048627 gagagatgttaatgtgttatatgtgagttaaacttctatatcggatgcaaaagtagatattgag 9048690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 143
Target Start/End: Complemental strand, 33009881 - 33009849
Alignment:
Q  111 atgttaatgtgtcatgtgtaagttaaacttcta 143  Q
    ||||||||||||||||||| |||||||||||||    
T  33009881 atgttaatgtgtcatgtgtgagttaaacttcta 33009849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0377 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0377
Description:

Target: scaffold0377; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 111 - 188
Target Start/End: Complemental strand, 12633 - 12554
Alignment:
Q  111 atgttaatgtgtcatgtgtaagttaaacttc--tacattggaagcaaaagtatatattgagaaacatgaatgtgagatga 188  Q
    ||||||||||||||||||| ||||||| |||  |||||| || |||| |||| |||||||| |||||| | |||||||||    
T  12633 atgttaatgtgtcatgtgtgagttaaatttctatacattagatgcaagagtaaatattgagcaacatgtaagtgagatga 12554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1933 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold1933
Description:

Target: scaffold1933; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 242
Target Start/End: Complemental strand, 744 - 525
Alignment:
Q  23 cccacattttttaacatgttgtgtctctgatcttatttggctctctcaccagatcagaaatatgaattgtctcacacgtaacagagatatgttaatgtgt 122  Q
    ||||| |||||||  |||||||| |||||| |||||| |||| |||||| |  ||| ||||| |||  ||||||||| ||| ||||  ||| ||||||||    
T  744 cccactttttttacgatgttgtgcctctgaccttattaggctatctcactaagtcacaaatacgaagagtctcacacttaaaagagtgatgataatgtgt 645  T
Q  123 catgtgtaagttaaacttctacattggaagcaaaagtatatattgagaaacatgaatgtgagatgactaatatacataatgtattaaggttttaggtgaa 222  Q
    |||  |  |||||||||| ||| ||||| |||| |||  ||||| |  |||||    ||||||||||  |||||| |||| | ||||||||||| || ||    
T  644 cataggggagttaaacttttacgttggatgcaagagtggatattaaacaacatattagtgagatgacccatatacctaatatcttaaggttttaagtcaa 545  T
Q  223 gatgtgatgtccatctcatt 242  Q
     || ||| ||| ||||||||    
T  544 aatatgacgtcaatctcatt 525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0169 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0169
Description:

Target: scaffold0169; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 107 - 150
Target Start/End: Original strand, 2286 - 2329
Alignment:
Q  107 agatatgttaatgtgtcatgtgtaagttaaacttctacattgga 150  Q
    |||||||||||||||||| |||||||||||| ||| ||||||||    
T  2286 agatatgttaatgtgtcaagtgtaagttaaaattccacattgga 2329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1315 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold1315
Description:

Target: scaffold1315; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 240
Target Start/End: Original strand, 1275 - 1393
Alignment:
Q  122 tcatgtgtaagttaaacttctacattggaagcaaaagtatatattgagaaacatgaatgtgagatgactaatatacataatgtattaaggttttaggtga 221  Q
    |||| ||| ||| |||||||||||||||| |||| | ||||||||| | |||||  | || | ||||| ||||||  ||| || |||||||||| | |||    
T  1275 tcatttgtgagtaaaacttctacattggatgcaagactatatattgtgcaacatataagttaaatgacaaatatatctaaagtcttaaggttttggatga 1374  T
Q  222 agatgtgatgtccatctca 240  Q
    ||||||| |||| ||||||    
T  1375 agatgtggtgtcaatctca 1393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1293 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold1293
Description:

Target: scaffold1293; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 240
Target Start/End: Complemental strand, 796 - 678
Alignment:
Q  122 tcatgtgtaagttaaacttctacattggaagcaaaagtatatattgagaaacatgaatgtgagatgactaatatacataatgtattaaggttttaggtga 221  Q
    |||| ||| ||| |||||||||||||||| |||| | ||||||||| | |||||  | || | ||||| ||||||  ||| || |||||||||| | |||    
T  796 tcatttgtgagtaaaacttctacattggatgcaagactatatattgtgcaacatataagttaaatgacaaatatatctaaagtcttaaggttttggatga 697  T
Q  222 agatgtgatgtccatctca 240  Q
    ||||||| |||| ||||||    
T  696 agatgtggtgtcaatctca 678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0284 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0284
Description:

Target: scaffold0284; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 242
Target Start/End: Complemental strand, 7671 - 7537
Alignment:
Q  108 gatatgttaatgtgtcatgtgtaagttaaacttctacattggaagcaaaagtatatattgagaaacatgaatgtgagatgactaatatacataatgtatt 207  Q
    |||||||||||||||||  ||  ||||||  || ||||||||| | || |||| || ||||| |||||  | || ||||||| || |||| |||||| ||    
T  7671 gatatgttaatgtgtcaaatgcgagttaacgttatacattggatggaagagtagattttgagcaacatataagttagatgaccaaaatacctaatgtctt 7572  T
Q  208 aaggttttaggtgaagatgtgatgtccatctcatt 242  Q
    ||||||| | |||||| |||| |||| ||||||||    
T  7571 aaggtttcatgtgaagttgtggtgtcaatctcatt 7537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 147
Target Start/End: Complemental strand, 96003 - 95961
Alignment:
Q  105 agagatatgttaatgtgtcatgtgtaagttaaacttctacatt 147  Q
    ||||| |||||||||| |||||||| |||||||||||||||||    
T  96003 agagagatgttaatgtttcatgtgtgagttaaacttctacatt 95961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University