View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6909_low_30 (Length: 246)
Name: NF6909_low_30
Description: NF6909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6909_low_30 |
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| [»] chr6 (6 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 230; Significance: 1e-127; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 1905863 - 1905618
Alignment:
| Q |
1 |
gccatttttgccattaccctattgcaccaagaagcacacttttacatattatagaaaaactgagaggaggaacaactcttgatctgcaaaaagaaaaaca |
100 |
Q |
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| T |
1905863 |
gccatttttgccattaccctattgcaccaagaagcacacttttacatattatagagaaactgagaggaggaacaactcttgatctgcaaaaagaaaaaca |
1905764 |
T |
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| Q |
101 |
taaggaaattaataaagggaagcataaagtgtagcttttgttgaaatcaagcgaagacaaggtgaatttgacaaaatcgtggcagcaccgtgttgccaaa |
200 |
Q |
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| T |
1905763 |
taaggaaattaataaacggaagcataaagtgtagcttttgttgaaatcaagcgaagacacggtgaatttgacaaaatcgtggaagcaccgtgttgccaaa |
1905664 |
T |
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| Q |
201 |
atcttcgcaacatgcgtgattttgtcaaactcaccgtcaatccaaa |
246 |
Q |
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| T |
1905663 |
atcttcgcaacatgcgtgattttgtcaaactcaccgtcaatccaaa |
1905618 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 6 - 92
Target Start/End: Complemental strand, 1878434 - 1878348
Alignment:
| Q |
6 |
ttttgccattaccctattgcaccaagaagcacacttttacatattatagaaaaactgagaggaggaacaactcttgatctgcaaaaa |
92 |
Q |
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| T |
1878434 |
ttttgccattaccctatcgccccaagaagcacaattttgcataatatggaaaaactgagtggaggaaccactcttgatctgcaaaaa |
1878348 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 14 - 101
Target Start/End: Complemental strand, 1911493 - 1911403
Alignment:
| Q |
14 |
ttaccctattgcaccaagaagcacacttttacatattatagaaaaactga---gaggaggaacaactcttgatctgcaaaaagaaaaacat |
101 |
Q |
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| T |
1911493 |
ttaccctattgccccaagaagcacacttttgcatataatggagaaactgattggaggaggaacagctcttgatctgcaaaaataaatacat |
1911403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 13 - 92
Target Start/End: Complemental strand, 1884432 - 1884353
Alignment:
| Q |
13 |
attaccctattgcaccaagaagcacacttttacatattatagaaaaactgagaggaggaacaactcttgatctgcaaaaa |
92 |
Q |
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| T |
1884432 |
attaccctatcgctccaagaagcacaattttgcatattatggagaaactgagtggatgaaccactcttgatctgcaaaaa |
1884353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 1896008 - 1895919
Alignment:
| Q |
1 |
gccatttttgccattaccctattgcaccaagaagcacacttttacatattatagaaaaactgagaggaggaacaactcttgatctgcaaa |
90 |
Q |
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| T |
1896008 |
gccatttttggcattaccctattgcaccaagaagtacaattttgcatactatggagaaactgagtggagaaaccactattgacctgcaaa |
1895919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 43
Target Start/End: Complemental strand, 1891224 - 1891187
Alignment:
| Q |
6 |
ttttgccattaccctattgcaccaagaagcacactttt |
43 |
Q |
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| T |
1891224 |
ttttggcattaccctattgctccaagaagcacactttt |
1891187 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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