View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6909_low_32 (Length: 238)
Name: NF6909_low_32
Description: NF6909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6909_low_32 |
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Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 17 - 219
Target Start/End: Complemental strand, 44551878 - 44551676
Alignment:
| Q |
17 |
caccttaaacctccacaaagaccaacaagaaaaaactatgacaatccttgttttactcatctcctataacctgcaaagacacaaagtgtttcacaaatga |
116 |
Q |
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| T |
44551878 |
caccttaaacctccacaaagaccaacaagaaaaaactatgacaatccttgttttactcatctcctataacctgcaaagacacaaagtgtttcacaaatga |
44551779 |
T |
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| Q |
117 |
agatgcgatgtgagcatgttattcgcgcatgtatacatgtgaagataaagatatcaatcatggaagaacagtagatgccaattaccaaaccaacggtctc |
216 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44551778 |
agatgcgatgtgagcatgttattcgggcatgtatacatgtgaagataaagatatcaatcatggaagaacagtagatgccaattaccaaaccaacggtctc |
44551679 |
T |
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| Q |
217 |
aga |
219 |
Q |
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||| |
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| T |
44551678 |
aga |
44551676 |
T |
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