View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6909_low_34 (Length: 233)

Name: NF6909_low_34
Description: NF6909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6909_low_34
NF6909_low_34
[»] chr6 (20 HSPs)
chr6 (1-233)||(31287448-31287681)
chr6 (1-128)||(26887762-26887886)
chr6 (1-124)||(27590195-27590315)
chr6 (1-128)||(27681927-27682051)
chr6 (1-128)||(27715566-27715690)
chr6 (1-127)||(26638375-26638501)
chr6 (1-127)||(26744341-26744467)
chr6 (1-127)||(26626100-26626226)
chr6 (1-127)||(26732077-26732203)
chr6 (1-128)||(27608176-27608303)
chr6 (1-84)||(26805536-26805616)
chr6 (2-85)||(26952618-26952698)
chr6 (1-124)||(27674624-27674744)
chr6 (1-127)||(26876531-26876654)
chr6 (1-68)||(28789396-28789460)
chr6 (1-127)||(26658946-26659069)
chr6 (1-127)||(26764917-26765040)
chr6 (1-74)||(26851552-26851622)
chr6 (7-74)||(27662444-27662511)
chr6 (5-124)||(27695640-27695759)
[»] chr1 (1 HSPs)
chr1 (1-128)||(265391-265515)
[»] scaffold0349 (1 HSPs)
scaffold0349 (1-128)||(16255-16379)
[»] chr4 (2 HSPs)
chr4 (1-127)||(18696516-18696639)
chr4 (60-127)||(18686778-18686845)
[»] chr2 (1 HSPs)
chr2 (1-122)||(17990202-17990320)
[»] scaffold0419 (1 HSPs)
scaffold0419 (1-68)||(10546-10610)
[»] scaffold0277 (2 HSPs)
scaffold0277 (1-68)||(1773-1837)
scaffold0277 (1-68)||(10739-10803)


Alignment Details
Target: chr6 (Bit Score: 177; Significance: 1e-95; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 31287681 - 31287448
Alignment:
Q  1 ttacgaaaccagaaagaaattgtgctttgtccccggatttggtgctcaaaccaatttggaatcccatctgttccatttgggaaataaaattcagtgcctc 100  Q
    |||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31287681 ttacgaaaccagaaagtaattgtgctttgtcccctgatttggtgctcaaaccaatttggaatcccatctgttccatttgggaaataaaattcagtgcctc 31287582  T
Q  101 cagcctcatgtactttctgttagtttatnnnnnnngaatgataattacactatgaattatatacatgaaatattatgtatcaaataatatatattgcaag 200  Q
    |||||||||||| |||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  31287581 cagcctcatgtagtttctgttagtttataaaaaaagaatgataattacactatgaattatatacatgaaatattatgtatcaaataatatctattgcaag 31287482  T
Q  201 -aaaaataataaacctgactcattaacattcttc 233  Q
     ||||| || ||||||||||| ||||||||||||    
T  31287481 aaaaaacaacaaacctgactcgttaacattcttc 31287448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 26887886 - 26887762
Alignment:
Q  1 ttacgaaaccagaaagaaattgtgctttgtccccggatttggtgctcaaaccaatttggaatcccatctgttccatttgggaaataaaattcagtgcctc 100  Q
    ||||||||||||||||||| ||||   ||||||| | |||||||||||||||||| ||||||||| ||| |||| |||||||||  ||| || |||| ||    
T  26887886 ttacgaaaccagaaagaaagtgtg---tgtcccctgctttggtgctcaaaccaatctggaatcccctctcttccgtttgggaaaagaaactctgtgcatc 26887790  T
Q  101 cagcctcatgtactttctgttagtttat 128  Q
    ||||||||| || |||||||||||||||    
T  26887789 cagcctcatatagtttctgttagtttat 26887762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 27590195 - 27590315
Alignment:
Q  1 ttacgaaaccagaaagaaattgtgctttgtccccggatttggtgctcaaaccaatttggaatcccatctgttccatttgggaaataaaattcagtgcctc 100  Q
    ||||||||||||||||||||||||   | ||||| | |||||||||||||||||| ||| ||||| |||||||| |||||||||||||| | ||||| ||    
T  27590195 ttacgaaaccagaaagaaattgtg---tctcccctgctttggtgctcaaaccaatctggtatcccctctgttccgtttgggaaataaaaataagtgcatc 27590291  T
Q  101 cagcctcatgtactttctgttagt 124  Q
     ||||||||||| || ||||||||    
T  27590292 gagcctcatgtagttcctgttagt 27590315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 27682051 - 27681927
Alignment:
Q  1 ttacgaaaccagaaagaaattgtgctttgtccccggatttggtgctcaaaccaatttggaatcccatctgttccatttgggaaataaaattcagtgcctc 100  Q
    ||||||||||||||||||||| ||    |||||| | |||||||||||||||||| ||| ||||| ||| ||||||||||||||||||  |  |||| ||    
T  27682051 ttacgaaaccagaaagaaattatgg---gtcccctgctttggtgctcaaaccaatctggtatcccctctcttccatttgggaaataaatcttggtgcatc 27681955  T
Q  101 cagcctcatgtactttctgttagtttat 128  Q
    | |||||||||| |||||||| ||||||    
T  27681954 ccgcctcatgtagtttctgtttgtttat 27681927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 27715566 - 27715690
Alignment:
Q  1 ttacgaaaccagaaagaaattgtgctttgtccccggatttggtgctcaaaccaatttggaatcccatctgttccatttgggaaataaaattcagtgcctc 100  Q
    ||||||||||||||||||||||||    |||||| | |||||||||||||||||| ||| |||||||||||||| |||||||| | ||  |  |||| ||    
T  27715566 ttacgaaaccagaaagaaattgtgg---gtcccctgctttggtgctcaaaccaatctggtatcccatctgttccgtttgggaatttaatataggtgcatc 27715662  T
Q  101 cagcctcatgtactttctgttagtttat 128  Q
    |||||| ||||| |||||||| ||||||    
T  27715663 cagcctgatgtagtttctgtttgtttat 27715690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 26638501 - 26638375
Alignment:
Q  1 ttacgaaaccagaaagaaattgtgctttgtccccggatttggtgctcaaaccaatttggaatcccatctgttccatttgggaaataaaattcagtgcctc 100  Q
    |||||||||||||||||||||||||  ||||||| | |||| ||||| ||||||| ||||||| | |||||||   |||| |||  ||  ||||||| ||    
T  26638501 ttacgaaaccagaaagaaattgtgccatgtcccctgctttgatgctcgaaccaatctggaatctcctctgttctggttggaaaacgaatatcagtgcatc 26638402  T
Q  101 cagcctcatgtactttctgttagttta 127  Q
    |||| ||||||| ||||||||||||||    
T  26638401 cagcttcatgtagtttctgttagttta 26638375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 26744467 - 26744341
Alignment:
Q  1 ttacgaaaccagaaagaaattgtgctttgtccccggatttggtgctcaaaccaatttggaatcccatctgttccatttgggaaataaaattcagtgcctc 100  Q
    |||||||||||||||||||||||||  ||||||| | |||| ||||| ||||||| ||||||| | |||||||   |||| |||  ||  ||||||| ||    
T  26744467 ttacgaaaccagaaagaaattgtgccatgtcccctgctttgatgctcgaaccaatctggaatctcctctgttctggttggaaaacgaatatcagtgcatc 26744368  T
Q  101 cagcctcatgtactttctgttagttta 127  Q
    |||| ||||||| ||||||||||||||    
T  26744367 cagcttcatgtagtttctgttagttta 26744341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 26626226 - 26626100
Alignment:
Q  1 ttacgaaaccagaaagaaattgtgctttgtccccggatttggtgctcaaaccaatttggaatcccatctgttccatttgggaaataaaattcagtgcctc 100  Q
    |||||||||||||||||||||||| | ||||||| |||||| ||||| ||||||| ||||||||| ||| |  | ||  |||||  ||  |  |||| ||    
T  26626226 ttacgaaaccagaaagaaattgtgttgtgtcccctgatttgatgctcgaaccaatctggaatcccctctttggcgttatggaaacgaatattggtgcatc 26626127  T
Q  101 cagcctcatgtactttctgttagttta 127  Q
    ||||||||||||||||||||| |||||    
T  26626126 cagcctcatgtactttctgtttgttta 26626100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 26732203 - 26732077
Alignment:
Q  1 ttacgaaaccagaaagaaattgtgctttgtccccggatttggtgctcaaaccaatttggaatcccatctgttccatttgggaaataaaattcagtgcctc 100  Q
    |||||||||||||||||||||||| | ||||||| |||||| ||||| ||||||| ||||||||| ||| |  | ||  |||||  ||  |  |||| ||    
T  26732203 ttacgaaaccagaaagaaattgtgttgtgtcccctgatttgatgctcgaaccaatctggaatcccctctttggcgttatggaaacgaatattggtgcatc 26732104  T
Q  101 cagcctcatgtactttctgttagttta 127  Q
    ||||||||||||||||||||| |||||    
T  26732103 cagcctcatgtactttctgtttgttta 26732077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 27608176 - 27608303
Alignment:
Q  1 ttacgaaaccagaaagaaattgtgctttgtccccggatttggtgctcaaaccaatttggaatcccat---ctgttccatttgggaaataaaattcagtgc 97  Q
    ||||||||||||||||||| ||||    |||||| | |||||||||||||||||| ||| ||||| |   ||||||| |||||||| | ||| |  ||||    
T  27608176 ttacgaaaccagaaagaaagtgtga---gtcccctgctttggtgctcaaaccaatctggtatcccctgctctgttccgtttgggaattcaaaataggtgc 27608272  T
Q  98 ctccagcctcatgtactttctgttagtttat 128  Q
     |||||||||||||| |||||||| ||||||    
T  27608273 atccagcctcatgtagtttctgtttgtttat 27608303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 26805616 - 26805536
Alignment:
Q  1 ttacgaaaccagaaagaaattgtgctttgtccccggatttggtgctcaaaccaatttggaatcccatctgttccatttgggaaa 84  Q
    ||||||||||||||||||||||||    |||||  | |||||||||||||||||| ||| ||||| |||||||| |||||||||    
T  26805616 ttacgaaaccagaaagaaattgtgg---gtcccttgctttggtgctcaaaccaatctggtatcccctctgttccgtttgggaaa 26805536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 85
Target Start/End: Complemental strand, 26952698 - 26952618
Alignment:
Q  2 tacgaaaccagaaagaaattgtgctttgtccccggatttggtgctcaaaccaatttggaatcccatctgttccatttgggaaat 85  Q
    |||||||||||||||||||||||   | ||||| | |||||||||||||||||| ||||||||| ||||||   ||||||||||    
T  26952698 tacgaaaccagaaagaaattgtg---tctcccctggtttggtgctcaaaccaatctggaatcccctctgttttgtttgggaaat 26952618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 27674624 - 27674744
Alignment:
Q  1 ttacgaaaccagaaagaaattgtgctttgtccccggatttggtgctcaaaccaatttggaatcccatctgttccatttgggaaataaaattcagtgcctc 100  Q
    ||||||||||||||||||||||||   | ||||| | |||||||||||||||||| ||| ||||| ||| || | |||||||||  |||   ||||| ||    
T  27674624 ttacgaaaccagaaagaaattgtg---tctcccctgctttggtgctcaaaccaatctggtatcccctctttttcgtttgggaaaagaaaacgagtgcatc 27674720  T
Q  101 cagcctcatgtactttctgttagt 124  Q
     ||||||||||| || ||||||||    
T  27674721 gagcctcatgtagttcctgttagt 27674744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 26876654 - 26876531
Alignment:
Q  1 ttacgaaaccagaaagaaattgtgctttgtccccggatttggtgctcaaaccaatttggaatcccatctgttccatttgggaaataaaattcagtgcctc 100  Q
    ||||||||||||||||||||||   ||||||||  ||||||||| |  ||||| | ||||||||| |||||||| ||||||| |  ||  |  |||| ||    
T  26876654 ttacgaaaccagaaagaaattg---tttgtcccgtgatttggtgttggaaccagtctggaatcccctctgttccgtttgggagaagaatataggtgcatc 26876558  T
Q  101 cagcctcatgtactttctgttagttta 127  Q
    |||||||||||| |||||| |||||||    
T  26876557 cagcctcatgtagtttctggtagttta 26876531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 28789460 - 28789396
Alignment:
Q  1 ttacgaaaccagaaagaaattgtgctttgtccccggatttggtgctcaaaccaatttggaatcccatc 68  Q
    ||||||||||||||||||||||||   | ||||| | |||||||||| ||||||| ||||||||||||    
T  28789460 ttacgaaaccagaaagaaattgtg---tctcccctgctttggtgctcgaaccaatctggaatcccatc 28789396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 26659069 - 26658946
Alignment:
Q  1 ttacgaaaccagaaagaaattgtgctttgtccccggatttggtgctcaaaccaatttggaatcccatctgttccatttgggaaataaaattcagtgcctc 100  Q
    ||||||||||||||||||| |||   |||||||| |||||||||||| ||||||| ||| ||||  || |  ||  |||| |||||| |   ||| | ||    
T  26659069 ttacgaaaccagaaagaaactgt---ttgtcccctgatttggtgctcgaaccaatctgggatcctctcagccccggttggaaaataataacgagtacatc 26658973  T
Q  101 cagcctcatgtactttctgttagttta 127  Q
    |||||||||||| ||||||||||||||    
T  26658972 cagcctcatgtagtttctgttagttta 26658946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 26765040 - 26764917
Alignment:
Q  1 ttacgaaaccagaaagaaattgtgctttgtccccggatttggtgctcaaaccaatttggaatcccatctgttccatttgggaaataaaattcagtgcctc 100  Q
    ||||||||||||||||||| |||   |||||||| |||||||||||| ||||||| ||| ||||  || |  ||  |||| |||||| |   ||| | ||    
T  26765040 ttacgaaaccagaaagaaactgt---ttgtcccctgatttggtgctcgaaccaatctgggatcctctcagccccggttggaaaataataacgagtacatc 26764944  T
Q  101 cagcctcatgtactttctgttagttta 127  Q
    |||||||||||| ||||||||||||||    
T  26764943 cagcctcatgtagtttctgttagttta 26764917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 26851622 - 26851552
Alignment:
Q  1 ttacgaaaccagaaagaaattgtgctttgtccccggatttggtgctcaaaccaatttggaatcccatctgttcc 74  Q
    |||||||||||||| ||||||||| |||   ||| | |||||||||| ||||||| ||||||||| ||||||||    
T  26851622 ttacgaaaccagaaggaaattgtgtttt---ccctgctttggtgctcgaaccaatctggaatcccttctgttcc 26851552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 74
Target Start/End: Original strand, 27662444 - 27662511
Alignment:
Q  7 aaccagaaagaaattgtgctttgtccccggatttggtgctcaaaccaatttggaatcccatctgttcc 74  Q
    |||||||||||||||| | | ||||||| || ||| ||||| ||||||| ||||||||| ||||||||    
T  27662444 aaccagaaagaaattgagttgtgtcccctgacttgatgctcgaaccaatctggaatcccctctgttcc 27662511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 124
Target Start/End: Original strand, 27695640 - 27695759
Alignment:
Q  5 gaaaccagaaagaaattgtgctttgtccccggatttggtgctcaaaccaatttggaatccca---tctgttccatttgggaaataaaattcagtgcctcc 101  Q
    ||||||| ||||||||||||   | ||||| | |||||||||||||||||| ||| |||||    |||||||| |||||||||| |||   ||||| ||     
T  27695640 gaaaccaaaaagaaattgtg---tctcccctgctttggtgctcaaaccaatctggtatccccagctctgttccgtttgggaaatcaaaacgagtgcatcg 27695736  T
Q  102 agcctcatgtactttctgttagt 124  Q
    ||||||||||| || ||||||||    
T  27695737 agcctcatgtagttgctgttagt 27695759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 265391 - 265515
Alignment:
Q  1 ttacgaaaccagaaagaaattgtgctttgtccccggatttggtgctcaaaccaatttggaatcccatctgttccatttgggaaataaaattcagtgcctc 100  Q
    |||||||||||||||||||||||| ||   |||  | |||||||||||||||||| ||| ||||| |||||||| ||||||||||| || | ||||| ||    
T  265391 ttacgaaaccagaaagaaattgtgttt---cccttgctttggtgctcaaaccaatctggtatcccctctgttccgtttgggaaatacaaataagtgcatc 265487  T
Q  101 cagcctcatgtactttctgttagtttat 128  Q
     ||| ||||||| |||||||||||||||    
T  265488 gagcttcatgtagtttctgttagtttat 265515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 16379 - 16255
Alignment:
Q  1 ttacgaaaccagaaagaaattgtgctttgtccccggatttggtgctcaaaccaatttggaatcccatctgttccatttgggaaataaaattcagtgcctc 100  Q
    ||||||||||||||||||||||||    |||||| | |||||||||||||||||| ||| |||||||||||||| |||||||| | ||  |  |||| ||    
T  16379 ttacgaaaccagaaagaaattgtgg---gtcccctgctttggtgctcaaaccaatctggtatcccatctgttccgtttgggaatttaatataggtgcatc 16283  T
Q  101 cagcctcatgtactttctgttagtttat 128  Q
    |||||| ||||| |||||||| ||||||    
T  16282 cagcctgatgtagtttctgtttgtttat 16255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 18696516 - 18696639
Alignment:
Q  1 ttacgaaaccagaaagaaattgtgctttgtccccggatttggtgctcaaaccaatttggaatcccatctgttccatttgggaaataaaattcagtgcctc 100  Q
    ||||| ||||||||||||||||    ||| |||| | |||| ||||| ||||||| ||||||||| |||||||| ||||||||| ||||||  ||||  |    
T  18696516 ttacggaaccagaaagaaattga---ttgacccctgctttgatgctcgaaccaatctggaatcccctctgttccgtttgggaaagaaaatttggtgcacc 18696612  T
Q  101 cagcctcatgtactttctgttagttta 127  Q
    |||||||||||| || |||||||||||    
T  18696613 cagcctcatgtaattgctgttagttta 18696639  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 60 - 127
Target Start/End: Original strand, 18686778 - 18686845
Alignment:
Q  60 aatcccatctgttccatttgggaaataaaattcagtgcctccagcctcatgtactttctgttagttta 127  Q
    |||||| |||||||| |||||||||||||||   ||||  ||||||||||||| || |||||||||||    
T  18686778 aatcccctctgttccgtttgggaaataaaatgaggtgcacccagcctcatgtaattgctgttagttta 18686845  T

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Target: chr2 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 17990202 - 17990320
Alignment:
Q  1 ttacgaaaccagaaagaaattgtgctttgtccccggatttggtgctcaaaccaatttggaatcccatctgttccatttgggaaataaaattcagtgcctc 100  Q
    ||||||||||||||||||||||||   || |||| | |||||||||||||||||| ||||||||| ||||| ||  | |||||| |||  || |||| ||    
T  17990202 ttacgaaaccagaaagaaattgtg---tgccccctgctttggtgctcaaaccaatctggaatcccttctgtcccggtcgggaaacaaatctctgtgcatc 17990298  T
Q  101 cagcctcatgtactttctgtta 122  Q
    |||| |||||||  ||||||||    
T  17990299 cagcttcatgtaggttctgtta 17990320  T

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Target: scaffold0419 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 10610 - 10546
Alignment:
Q  1 ttacgaaaccagaaagaaattgtgctttgtccccggatttggtgctcaaaccaatttggaatcccatc 68  Q
    ||||||||||||||||||||||||   | ||||| | |||||||||| ||||||| ||||||||||||    
T  10610 ttacgaaaccagaaagaaattgtg---tctcccctgctttggtgctcgaaccaatctggaatcccatc 10546  T

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Target: scaffold0277 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 1773 - 1837
Alignment:
Q  1 ttacgaaaccagaaagaaattgtgctttgtccccggatttggtgctcaaaccaatttggaatcccatc 68  Q
    ||||||||||||||||||||||||   | ||||| | |||||||||| ||||||| ||||||||||||    
T  1773 ttacgaaaccagaaagaaattgtg---tctcccctgctttggtgctcgaaccaatctggaatcccatc 1837  T

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Target: scaffold0277; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 10739 - 10803
Alignment:
Q  1 ttacgaaaccagaaagaaattgtgctttgtccccggatttggtgctcaaaccaatttggaatcccatc 68  Q
    ||||||||||||||||||||||||   | ||||| | |||||||||| ||||||| ||||||||||||    
T  10739 ttacgaaaccagaaagaaattgtg---tctcccctgctttggtgctcgaaccaatctggaatcccatc 10803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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