View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6909_low_4 (Length: 523)
Name: NF6909_low_4
Description: NF6909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6909_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 458; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 19 - 509
Target Start/End: Complemental strand, 53983665 - 53983179
Alignment:
| Q |
19 |
gtattgcctctcattatctcaatacttgatagttgattgtatctctccaagatatatgaagccattagacatagcttgtgccactctaagtgtcttgcag |
118 |
Q |
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| T |
53983665 |
gtattgcctctcattatctcaatacttgatagttgattgtatctctccaagatatatgaagccattagacatagcttgtgccactctaagtttcttgcag |
53983566 |
T |
|
| Q |
119 |
gtattgttattggttatatggaagggaaccttaattccttttattattgtagtaaatttgcttgattttatcttcttttgattagcagttgtctcttcct |
218 |
Q |
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| T |
53983565 |
gtattgttattggttatatggaagggaaccttaattccttttattattgtagtaaatttgcttgattttatcttcttttgattagcagttgtctcttcct |
53983466 |
T |
|
| Q |
219 |
tttttacagtacctcaaaatggaccccggagttgagcatctcaattactattgagtttgcaaatgataactttaaatatcatgaagttgattgtattgta |
318 |
Q |
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| T |
53983465 |
tttttacagtacctcaaaatggaccccggagttgagcatctcaattactattgaggttgcaaatgataactttaaatatcatgaagttgattgtatagta |
53983366 |
T |
|
| Q |
319 |
gtagtggccggatactcttaattctgctgtcatttactgcaagtttttgatgtcttgcatggagcatgttgaaatttggtaccccgcccactacttgaaa |
418 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53983365 |
gtagt----ggatactcttaattctgctgtcatttactgcaagtttttgatgtcttgcatggagcatgttgaaatttggtaccccgcccactacttgaaa |
53983270 |
T |
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| Q |
419 |
taccatcgtagatgcatttgttctttattttaattttaatatgatattataaaactttgctgtcgaaagcatacttgcccattgctgatgt |
509 |
Q |
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| T |
53983269 |
taccatcgtagatgcatttgttctttattttaattttaatatgatattataaaactttgctgtcgaaagcatacttgcccattactgatgt |
53983179 |
T |
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