View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6909_low_40 (Length: 215)
Name: NF6909_low_40
Description: NF6909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6909_low_40 |
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Alignment Details
Target: chr4 (Bit Score: 169; Significance: 8e-91; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 20 - 200
Target Start/End: Complemental strand, 29936524 - 29936344
Alignment:
| Q |
20 |
atctggaaacagtggtcgtcactctttttcagaatcatgtggtgcacccacaacagatggcttcttagagactgcagatggtggacctcaagcttctctt |
119 |
Q |
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| T |
29936524 |
atctggaaacagtggtcgtcactctttttcagcatcatgtggtgcacccacaacagatggcttcttagagactgcagatggtggacctcaagcttctctt |
29936425 |
T |
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| Q |
120 |
tcaacagtttcttaaccaccagaaatgccactttatcgcctggcatattttaacaagcctgagatttcagtcttattgatg |
200 |
Q |
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| T |
29936424 |
tcaacagtttcttcaccaccagaagtgccactttatcgcctggcatattttaacaagcctgagatttcagtcttattgatg |
29936344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 20 - 183
Target Start/End: Original strand, 51157646 - 51157809
Alignment:
| Q |
20 |
atctggaaacagtggtcgtcactctttttcagaatcatgtggtgcacccacaacagatggcttcttagagactgcagatggtggacctcaagcttctctt |
119 |
Q |
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|||||||||||| |||||||||||||| |||| ||||| || ||||||| ||||||||||||||||||| |||||||| ||||||||||||||||||| | |
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| T |
51157646 |
atctggaaacagcggtcgtcactctttctcagcatcatatgttgcacccgcaacagatggcttcttagaaactgcagacggtggacctcaagcttctcct |
51157745 |
T |
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| Q |
120 |
tcaacagtttcttaaccaccagaaatgccactttatcgcctggcatattttaacaagcctgaga |
183 |
Q |
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| T |
51157746 |
tcgacagtttcttcaccaccggaagtgccactttatcgcctggcatattataacaagcctgaga |
51157809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 22 - 200
Target Start/End: Original strand, 51146509 - 51146687
Alignment:
| Q |
22 |
ctggaaacagtggtcgtcactctttttcagaatcatgtggtgcacccacaacagatggcttcttagagactgcagatggtggacctcaagcttctctttc |
121 |
Q |
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|||||||||| |||||||||||||| |||| ||| | || |||||||||||||||||| |||||||| |||| |||||| ||||||||||| |||| ||| |
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| T |
51146509 |
ctggaaacagcggtcgtcactctttctcagcatcttatgttgcacccacaacagatggattcttagaaactgaagatgggggacctcaagcgtctccttc |
51146608 |
T |
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| Q |
122 |
aacagtttcttaaccaccagaaatgccactttatcgcctggcatattttaacaagcctgagatttcagtcttattgatg |
200 |
Q |
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|| | ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
51146609 |
aaaaaattcttcaccaccagaagtgccactttatcgcctggcatattttaacaagcctgagattccagtcttattgatg |
51146687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 77 - 194
Target Start/End: Original strand, 51200497 - 51200614
Alignment:
| Q |
77 |
tggcttcttagagactgcagatggtggacctcaagcttctctttcaacagtttcttaaccaccagaaatgccactttatcgcctggcatattttaacaag |
176 |
Q |
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|||||||| ||| | ||||||||||||||| |||| | ||| |||||| ||||||| |||||||||| | ||||||||||||||||| ||||| |||||| |
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| T |
51200497 |
tggcttctcagaaattgcagatggtggaccacaagttcctccttcaacggtttcttcaccaccagaagttccactttatcgcctggcctatttaaacaag |
51200596 |
T |
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| Q |
177 |
cctgagatttcagtctta |
194 |
Q |
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|| |||||| | |||||| |
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| T |
51200597 |
cccgagattcctgtctta |
51200614 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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