View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6909_low_41 (Length: 211)
Name: NF6909_low_41
Description: NF6909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6909_low_41 |
 | |
|
| [»] scaffold0101 (1 HSPs) |
| | |
|
| [»] scaffold0108 (2 HSPs) |
| | |
|
| [»] scaffold0323 (1 HSPs) |
| | |
|
| [»] scaffold0051 (1 HSPs) |
| | |
|
| [»] scaffold0064 (2 HSPs) |
| | |
|
| [»] scaffold0040 (1 HSPs) |
| | |
|
| [»] scaffold0304 (1 HSPs) |
| | |
|
| [»] scaffold0022 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 152; Significance: 1e-80; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 19 - 190
Target Start/End: Original strand, 7344357 - 7344528
Alignment:
| Q |
19 |
tcaggagacgcagaatatccggaagaagatgactctcgaaagatatctagatctaaatctgacaagactcctcacaagaagaaatattcgaaaatggaca |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| | ||||| |
|
|
| T |
7344357 |
tcaggagacgcagaatatccggaagaagatgactctcgaaagatatctagatctaaatctgacaagactgctcacaagaagaaatcttcgaagacggaca |
7344456 |
T |
|
| Q |
119 |
agaggaagaagtctgaaaaatcttctaaaggaaaacaaacccagactgctgaagatgaggtaagtcattctt |
190 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
7344457 |
agaggaagaagtctgaaaaatcttctaaaggaaaacaaacccagactgttgaagatgaggtaagtcattctt |
7344528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 19 - 188
Target Start/End: Original strand, 14686044 - 14686213
Alignment:
| Q |
19 |
tcaggagacgcagaatatccggaagaagatgactctcgaaagatatctagatctaaatctgacaagactcctcacaagaagaaatattcgaaaatggaca |
118 |
Q |
| |
|
|||||||||| |||||| | ||||||||| |||| || | | ||||||||| || |||||||||||| ||||||| ||||| | |||||||| ||||| |
|
|
| T |
14686044 |
tcaggagacgtagaatacctggaagaagacaactcccggagaacatctagatcgaagtctgacaagactgctcacaaaaagaagtcttcgaaaacggaca |
14686143 |
T |
|
| Q |
119 |
agaggaagaagtctgaaaaatcttctaaaggaaaacaaacccagactgctgaagatgaggtaagtcattc |
188 |
Q |
| |
|
||| ||||||||| ||||||||||| |||||||||||| | || |||| ||||||||||||||| |||| |
|
|
| T |
14686144 |
agaagaagaagtccgaaaaatcttccaaaggaaaacaagcacacactgtcgaagatgaggtaagttattc |
14686213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 30 - 150
Target Start/End: Complemental strand, 10168410 - 10168290
Alignment:
| Q |
30 |
agaatatccggaagaagatgactctcgaaagatatctagatctaaatctgacaagactcctcacaagaagaaatattcgaaaatggacaagaggaagaag |
129 |
Q |
| |
|
|||||| |||||||||||| ||||| ||||| ||| | ||| ||||||||||| ||| |||| || || |||| ||| |||| |||||| | |||||| |
|
|
| T |
10168410 |
agaatacccggaagaagatacctctcaaaagacatccaaatcaaaatctgacaaaacttctcagaaaaataaatcttcaaaaacggacaaaaagaagaaa |
10168311 |
T |
|
| Q |
130 |
tctgaaaaatcttctaaagga |
150 |
Q |
| |
|
||||||||| |||| |||||| |
|
|
| T |
10168310 |
tctgaaaaaccttccaaagga |
10168290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 118; Significance: 2e-60; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 19 - 188
Target Start/End: Original strand, 16313177 - 16313346
Alignment:
| Q |
19 |
tcaggagacgcagaatatccggaagaagatgactctcgaaagatatctagatctaaatctgacaagactcctcacaagaagaaatattcgaaaatggaca |
118 |
Q |
| |
|
|||||||| | |||||||||||||||||| |||||||||| || ||||||||| || |||||||||||| ||||||||||||||| |||||| | ||||| |
|
|
| T |
16313177 |
tcaggagatgtagaatatccggaagaagacgactctcgaaggacatctagatcgaagtctgacaagactgctcacaagaagaaatcttcgaagacggaca |
16313276 |
T |
|
| Q |
119 |
agaggaagaagtctgaaaaatcttctaaaggaaaacaaacccagactgctgaagatgaggtaagtcattc |
188 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
16313277 |
agaggaagaagtccgaaaaatcttctaaaggaaaacaaacccagactgttgaagatgaggtaagtcattc |
16313346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 51 - 183
Target Start/End: Complemental strand, 23493773 - 23493641
Alignment:
| Q |
51 |
ctctcgaaagatatctagatctaaatctgacaagactcctcacaagaagaaatattcgaaaatggacaagaggaagaagtctgaaaaatcttctaaagga |
150 |
Q |
| |
|
||||||||||| ||| | ||| ||||||||||| ||| |||| |||||||||| ||| |||| |||||| | |||||| || |||||| |||| |||||| |
|
|
| T |
23493773 |
ctctcgaaagacatccaaatcgaaatctgacaaaacttctcataagaagaaatcttcaaaaacggacaaaaagaagaaatccgaaaaaccttccaaagga |
23493674 |
T |
|
| Q |
151 |
aaacaaacccagactgctgaagatgaggtaagt |
183 |
Q |
| |
|
|||||| ||| |||| |||||||||||||||| |
|
|
| T |
23493673 |
aaacaagcccgcactgttgaagatgaggtaagt |
23493641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 140
Target Start/End: Original strand, 19028273 - 19028383
Alignment:
| Q |
30 |
agaatatccggaagaagatgactctcgaaagatatctagatctaaatctgacaagactcctcacaagaagaaatattcgaaaatggacaagaggaagaag |
129 |
Q |
| |
|
|||||| || ||||||||| ||||||||| | ||| | ||| |||||||||||||| |||| || ||||||| ||| || | |||||| |||||||| |
|
|
| T |
19028273 |
agaataccctgaagaagatagctctcgaaaaacatccaaatcgaaatctgacaagacgtctcagaaaaagaaatcttcaaagacggacaaaaggaagaaa |
19028372 |
T |
|
| Q |
130 |
tctgaaaaatc |
140 |
Q |
| |
|
||||| ||||| |
|
|
| T |
19028373 |
tctgacaaatc |
19028383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 114; Significance: 5e-58; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 19 - 188
Target Start/End: Original strand, 14326606 - 14326775
Alignment:
| Q |
19 |
tcaggagacgcagaatatccggaagaagatgactctcgaaagatatctagatctaaatctgacaagactcctcacaagaagaaatattcgaaaatggaca |
118 |
Q |
| |
|
|||||||| | |||||||||||||||||| |||||||||| || ||||||||| || |||||||||||| ||||||||||||||| |||||| | ||||| |
|
|
| T |
14326606 |
tcaggagatgtagaatatccggaagaagacgactctcgaaggacatctagatcgaagtctgacaagactgctcacaagaagaaatcttcgaagacggaca |
14326705 |
T |
|
| Q |
119 |
agaggaagaagtctgaaaaatcttctaaaggaaaacaaacccagactgctgaagatgaggtaagtcattc |
188 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
14326706 |
agaggaagaagtccgaaaaatcttctaaaggaaaacaaacccagactgtcgaagatgaggtaagtcattc |
14326775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 40 - 182
Target Start/End: Original strand, 18162191 - 18162333
Alignment:
| Q |
40 |
gaagaagatgactctcgaaagatatctagatctaaatctgacaagactcctcacaagaagaaatattcgaaaatggacaagaggaagaagtctgaaaaat |
139 |
Q |
| |
|
||||||||| ||||||||||| || | ||| ||||||||||| ||| |||| || ||||||| ||| |||| |||||| | |||||| || |||||| |
|
|
| T |
18162191 |
gaagaagatagctctcgaaagacctccaaatcgaaatctgacaaaacttctcataaaaagaaatcttcaaaaacggacaaaaagaagaaatccgaaaaac |
18162290 |
T |
|
| Q |
140 |
cttctaaaggaaaacaaacccagactgctgaagatgaggtaag |
182 |
Q |
| |
|
| || |||||||||||| ||| |||| |||||||||||||| |
|
|
| T |
18162291 |
cctccaaaggaaaacaagcccgcactgtcgaagatgaggtaag |
18162333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 114; Significance: 5e-58; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 19 - 188
Target Start/End: Complemental strand, 24957261 - 24957092
Alignment:
| Q |
19 |
tcaggagacgcagaatatccggaagaagatgactctcgaaagatatctagatctaaatctgacaagactcctcacaagaagaaatattcgaaaatggaca |
118 |
Q |
| |
|
|||||||||| |||||||||||||||||| |||||||||| || ||| ||||| || |||||||||||| ||||||||||||||| |||||| | ||||| |
|
|
| T |
24957261 |
tcaggagacgtagaatatccggaagaagacgactctcgaaggacatcaagatcgaagtctgacaagactgctcacaagaagaaatcttcgaagacggaca |
24957162 |
T |
|
| Q |
119 |
agaggaagaagtctgaaaaatcttctaaaggaaaacaaacccagactgctgaagatgaggtaagtcattc |
188 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
24957161 |
agaggaagaagtccgaaaaatcttctaaaggaaaacaaacccagactgtagaagatgaggtaagtcattc |
24957092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 40 - 183
Target Start/End: Complemental strand, 22645785 - 22645642
Alignment:
| Q |
40 |
gaagaagatgactctcgaaagatatctagatctaaatctgacaagactcctcacaagaagaaatattcgaaaatggacaagaggaagaagtctgaaaaat |
139 |
Q |
| |
|
||||||||| ||||||||||| ||| | ||| ||||||||||| ||| |||| |||||||||| ||| |||| |||||| | |||||| || ||||||| |
|
|
| T |
22645785 |
gaagaagatagctctcgaaagacatccaaatcgaaatctgacaaaacttctcataagaagaaatcttcaaaaacggacaaaaagaagaaatccgaaaaat |
22645686 |
T |
|
| Q |
140 |
cttctaaaggaaaacaaacccagactgctgaagatgaggtaagt |
183 |
Q |
| |
|
|||| |||||||||||| ||| |||| ||||||||||||||| |
|
|
| T |
22645685 |
cttccaaaggaaaacaagcccgcactgtcgaagatgaggtaagt |
22645642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 40 - 183
Target Start/End: Original strand, 23193453 - 23193596
Alignment:
| Q |
40 |
gaagaagatgactctcgaaagatatctagatctaaatctgacaagactcctcacaagaagaaatattcgaaaatggacaagaggaagaagtctgaaaaat |
139 |
Q |
| |
|
||||||||| ||||||||||| || ||||| ||||||||||| ||| |||| || ||||||| ||| |||| |||||| | |||||| || |||||| |
|
|
| T |
23193453 |
gaagaagatagctctcgaaagacctccagatcgaaatctgacaaaacttctcataaaaagaaatcttcaaaaacggacaaaaagaagaaatccgaaaaac |
23193552 |
T |
|
| Q |
140 |
cttctaaaggaaaacaaacccagactgctgaagatgaggtaagt |
183 |
Q |
| |
|
|||| ||||| |||||| ||| |||| ||||||||||||||| |
|
|
| T |
23193553 |
cttccaaagggaaacaagcccgcactgtcgaagatgaggtaagt |
23193596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 40 - 183
Target Start/End: Original strand, 23607517 - 23607660
Alignment:
| Q |
40 |
gaagaagatgactctcgaaagatatctagatctaaatctgacaagactcctcacaagaagaaatattcgaaaatggacaagaggaagaagtctgaaaaat |
139 |
Q |
| |
|
||||||||| ||||||||||| || ||||| ||||||||||| ||| |||| || ||||||| ||| |||| |||||| | |||||| || |||||| |
|
|
| T |
23607517 |
gaagaagatagctctcgaaagacctccagatcgaaatctgacaaaacttctcataaaaagaaatcttcaaaaacggacaaaaagaagaaatccgaaaaac |
23607616 |
T |
|
| Q |
140 |
cttctaaaggaaaacaaacccagactgctgaagatgaggtaagt |
183 |
Q |
| |
|
|||| ||||| |||||| ||| |||| ||||||||||||||| |
|
|
| T |
23607617 |
cttccaaagggaaacaagcccgcactgtcgaagatgaggtaagt |
23607660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 30 - 156
Target Start/End: Original strand, 23619050 - 23619176
Alignment:
| Q |
30 |
agaatatccggaagaagatgactctcgaaagatatctagatctaaatctgacaagactcctcacaagaagaaatattcgaaaatggacaagaggaagaag |
129 |
Q |
| |
|
|||||| || ||||||||| ||||| ||||| ||| | ||| ||||||||||| ||| |||| || ||||||| ||| |||| |||||| | |||||| |
|
|
| T |
23619050 |
agaatacccagaagaagatagctctcaaaagacatccaaatcgaaatctgacaaaacttctcataaaaagaaatcttcaaaaacggacaaaaagaagaaa |
23619149 |
T |
|
| Q |
130 |
tctgaaaaatcttctaaaggaaaacaa |
156 |
Q |
| |
|
||||||||| |||| |||||||||||| |
|
|
| T |
23619150 |
tctgaaaaaccttccaaaggaaaacaa |
23619176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0101 (Bit Score: 107; Significance: 8e-54; HSPs: 1)
Name: scaffold0101
Description:
Target: scaffold0101; HSP #1
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 30 - 188
Target Start/End: Original strand, 49105 - 49263
Alignment:
| Q |
30 |
agaatatccggaagaagatgactctcgaaagatatctagatctaaatctgacaagactcctcacaagaagaaatattcgaaaatggacaagaggaagaag |
129 |
Q |
| |
|
|||||||||||||||||| ||||||||| || ||||||||| || |||||||||||| ||||||||||||||| |||||||| |||||||||||||||| |
|
|
| T |
49105 |
agaatatccggaagaagacaactctcgaaggacatctagatcgaagtctgacaagactgctcacaagaagaaatcttcgaaaacggacaagaggaagaag |
49204 |
T |
|
| Q |
130 |
tctgaaaaatcttctaaaggaaaacaaacccagactgctgaagatgaggtaagtcattc |
188 |
Q |
| |
|
|| ||||||||||| |||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
49205 |
tccgaaaaatcttccaaaggaaaacaaacccagactgtcgaagatgaggtaagtcattc |
49263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 102; Significance: 8e-51; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 19 - 188
Target Start/End: Complemental strand, 22083709 - 22083540
Alignment:
| Q |
19 |
tcaggagacgcagaatatccggaagaagatgactctcgaaagatatctagatctaaatctgacaagactcctcacaagaagaaatattcgaaaatggaca |
118 |
Q |
| |
|
|||||||| | |||||||||||||||||| ||||||||| || ||| ||||| || |||||||||||| ||||||||||||||| |||||||| ||||| |
|
|
| T |
22083709 |
tcaggagatgtagaatatccggaagaagacaactctcgaaggacatccagatcgaagtctgacaagactactcacaagaagaaatcttcgaaaacggaca |
22083610 |
T |
|
| Q |
119 |
agaggaagaagtctgaaaaatcttctaaaggaaaacaaacccagactgctgaagatgaggtaagtcattc |
188 |
Q |
| |
|
||||||||||||| ||||||||||| |||||||||||| ||||||||| |||||||||||||||||||| |
|
|
| T |
22083609 |
agaggaagaagtccgaaaaatcttccaaaggaaaacaagcccagactgtcgaagatgaggtaagtcattc |
22083540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0108 (Bit Score: 66; Significance: 2e-29; HSPs: 2)
Name: scaffold0108
Description:
Target: scaffold0108; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 38 - 183
Target Start/End: Complemental strand, 34689 - 34544
Alignment:
| Q |
38 |
cggaagaagatgactctcgaaagatatctagatctaaatctgacaagactcctcacaagaagaaatattcgaaaatggacaagaggaagaagtctgaaaa |
137 |
Q |
| |
|
||||||||||| ||||||||||| ||| ||||| |||||||| || ||| ||||||||||||||| ||| |||| |||||| | ||||||||||||||| |
|
|
| T |
34689 |
cggaagaagatagctctcgaaagacatccagatcgaaatctgataaaactgctcacaagaagaaatcttcaaaaacggacaaaaagaagaagtctgaaaa |
34590 |
T |
|
| Q |
138 |
atcttctaaaggaaaacaaacccagactgctgaagatgaggtaagt |
183 |
Q |
| |
|
| |||| |||||||||||| ||| |||| ||||||||||||||| |
|
|
| T |
34589 |
accttccaaaggaaaacaagcccgcactgtcgaagatgaggtaagt |
34544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0108; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 38 - 183
Target Start/End: Complemental strand, 41490 - 41345
Alignment:
| Q |
38 |
cggaagaagatgactctcgaaagatatctagatctaaatctgacaagactcctcacaagaagaaatattcgaaaatggacaagaggaagaagtctgaaaa |
137 |
Q |
| |
|
||||||||||| || |||||||| ||| ||||| |||||||| || ||| |||||||||||||| ||| |||| |||||| | ||||||||| ||||| |
|
|
| T |
41490 |
cggaagaagatagctatcgaaagacatcaagatcgaaatctgataaaactgttcacaagaagaaatcttcaaaaacggacaaaaagaagaagtccgaaaa |
41391 |
T |
|
| Q |
138 |
atcttctaaaggaaaacaaacccagactgctgaagatgaggtaagt |
183 |
Q |
| |
|
| |||| |||||||||||| ||| |||| ||||||||||||||| |
|
|
| T |
41390 |
accttcgaaaggaaaacaagcccgcactgtcgaagatgaggtaagt |
41345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0323 (Bit Score: 65; Significance: 9e-29; HSPs: 1)
Name: scaffold0323
Description:
Target: scaffold0323; HSP #1
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 19 - 187
Target Start/End: Complemental strand, 1775 - 1607
Alignment:
| Q |
19 |
tcaggagacgcagaatatccggaagaagatgactctcgaaagatatctagatctaaatctgacaagactcctcacaagaagaaatattcgaaaatggaca |
118 |
Q |
| |
|
||||| |||| |||||| ||||| |||||| ||||||||||| ||| ||||| || |||||||| ||| | ||||||||||||| |||||||| ||||| |
|
|
| T |
1775 |
tcaggggacgtagaatacccggaggaagatagctctcgaaagacatccagatcgaagtctgacaaaactgcccacaagaagaaatcttcgaaaacggaca |
1676 |
T |
|
| Q |
119 |
agaggaagaagtctgaaaaatcttctaaaggaaaacaaacccagactgctgaagatgaggtaagtcatt |
187 |
Q |
| |
|
| | ||||||||| ||||||||||| |||||||||||| | | |||| |||||||| |||||||||| |
|
|
| T |
1675 |
aaaagaagaagtccgaaaaatcttccaaaggaaaacaagcacgcactgtcgaagatgaagtaagtcatt |
1607 |
T |
|
Back To:
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Target: scaffold0051 (Bit Score: 60; Significance: 9e-26; HSPs: 1)
Name: scaffold0051
Description:
Target: scaffold0051; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 40 - 187
Target Start/End: Complemental strand, 77021 - 76874
Alignment:
| Q |
40 |
gaagaagatgactctcgaaagatatctagatctaaatctgacaagactcctcacaagaagaaatattcgaaaatggacaagaggaagaagtctgaaaaat |
139 |
Q |
| |
|
||||||||| ||||||||||| ||| || || |||||||| |||||| ||||||||||||||| ||| |||| |||||| | ||||||||| |||||| |
|
|
| T |
77021 |
gaagaagatagctctcgaaagacatccaggtcgaaatctgataagactgctcacaagaagaaatcttcaaaaacggacaaaaagaagaagtccgaaaaac |
76922 |
T |
|
| Q |
140 |
cttctaaaggaaaacaaacccagactgctgaagatgaggtaagtcatt |
187 |
Q |
| |
|
|||| |||||||| ||| ||| |||| ||||||||||||||||||| |
|
|
| T |
76921 |
cttccaaaggaaagcaagcccgcactgtcgaagatgaggtaagtcatt |
76874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0064 (Bit Score: 54; Significance: 3e-22; HSPs: 2)
Name: scaffold0064
Description:
Target: scaffold0064; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 38 - 183
Target Start/End: Original strand, 30248 - 30393
Alignment:
| Q |
38 |
cggaagaagatgactctcgaaagatatctagatctaaatctgacaagactcctcacaagaagaaatattcgaaaatggacaagaggaagaagtctgaaaa |
137 |
Q |
| |
|
||||||||||| || |||||||| ||| ||||| |||||||| || ||| |||||||||||||| ||| |||| |||||| | ||||||||| ||||| |
|
|
| T |
30248 |
cggaagaagatagctatcgaaagacatcaagatcgaaatctgataaaactgttcacaagaagaaatcttcaaaaacggacaaaaagaagaagtccgaaaa |
30347 |
T |
|
| Q |
138 |
atcttctaaaggaaaacaaacccagactgctgaagatgaggtaagt |
183 |
Q |
| |
|
| |||| |||||||||||| ||| |||| ||||||||||||||| |
|
|
| T |
30348 |
accttcgaaaggaaaacaagcccgcactgtcgaagatgaggtaagt |
30393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0064; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 38 - 183
Target Start/End: Original strand, 42239 - 42384
Alignment:
| Q |
38 |
cggaagaagatgactctcgaaagatatctagatctaaatctgacaagactcctcacaagaagaaatattcgaaaatggacaagaggaagaagtctgaaaa |
137 |
Q |
| |
|
||||||||||| || |||||||| ||| ||||| |||||||| || ||| |||||||||||||| ||| |||| |||||| | ||||||||| ||||| |
|
|
| T |
42239 |
cggaagaagatagctatcgaaagacatcaagatcgaaatctgataaaactgttcacaagaagaaatcttcaaaaacggacaaaaagaagaagtccgaaaa |
42338 |
T |
|
| Q |
138 |
atcttctaaaggaaaacaaacccagactgctgaagatgaggtaagt |
183 |
Q |
| |
|
| |||| |||||||||||| ||| |||| ||||||||||||||| |
|
|
| T |
42339 |
accttcgaaaggaaaacaagcccgcactgtcgaagatgaggtaagt |
42384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 40 - 152
Target Start/End: Original strand, 14559787 - 14559899
Alignment:
| Q |
40 |
gaagaagatgactctcgaaagatatctagatctaaatctgacaagactcctcacaagaagaaatattcgaaaatggacaagaggaagaagtctgaaaaat |
139 |
Q |
| |
|
||||||||| ||||||||||| ||| | ||| ||||||||||| ||| |||| |||||||||| ||| |||| |||||| | |||||| || |||||| |
|
|
| T |
14559787 |
gaagaagatagctctcgaaagacatccaaatcgaaatctgacaaaacttctcataagaagaaatcttcaaaaacggacaaaaagaagaaatcagaaaaac |
14559886 |
T |
|
| Q |
140 |
cttctaaaggaaa |
152 |
Q |
| |
|
|||| |||||||| |
|
|
| T |
14559887 |
cttccaaaggaaa |
14559899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 30 - 183
Target Start/End: Original strand, 13280113 - 13280266
Alignment:
| Q |
30 |
agaatatccggaagaagatgactctcgaaagatatctagatctaaatctgacaagactcctcacaagaagaaatattcgaaaatggacaagaggaagaag |
129 |
Q |
| |
|
|||||| |||||||||||| ||| ||||||| || | || ||||||||||||||| |||| || ||||||| ||| ||||| ||||| | |||||| |
|
|
| T |
13280113 |
agaatacccggaagaagatagctcccgaaagacgtccaagtcgaaatctgacaagacttctcagaaaaagaaatcttcaaaaatagacaaaaagaagaaa |
13280212 |
T |
|
| Q |
130 |
tctgaaaaatcttctaaaggaaaacaaacccagactgctgaagatgaggtaagt |
183 |
Q |
| |
|
||||||| | | || |||||||| ||| ||| |||| || |||||||||||| |
|
|
| T |
13280213 |
tctgaaagaccctccaaaggaaagcaagcccgcactgtcgaggatgaggtaagt |
13280266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0040 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0040
Description:
Target: scaffold0040; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 30 - 183
Target Start/End: Complemental strand, 38585 - 38432
Alignment:
| Q |
30 |
agaatatccggaagaagatgactctcgaaagatatctagatctaaatctgacaagactcctcacaagaagaaatattcgaaaatggacaagaggaagaag |
129 |
Q |
| |
|
|||||| |||||||||||| |||||||| || ||| | || ||||||||||| ||| |||| || ||||||| ||| |||| ||||| | ||||||| |
|
|
| T |
38585 |
agaatacccggaagaagatagctctcgaaggacatccaagtcaaaatctgacaaaacttctcagaaaaagaaatcttcaaaaacagacaaaaagaagaag |
38486 |
T |
|
| Q |
130 |
tctgaaaaatcttctaaaggaaaacaaacccagactgctgaagatgaggtaagt |
183 |
Q |
| |
|
||||||||| | || |||||||| ||| || |||| ||| |||||||||||| |
|
|
| T |
38485 |
tctgaaaaaccctccaaaggaaagcaagtccgcactgttgaggatgaggtaagt |
38432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 188
Target Start/End: Complemental strand, 1732496 - 1732384
Alignment:
| Q |
76 |
tctgacaagactcctcacaagaagaaatattcgaaaatggacaagaggaagaagtctgaaaaatcttctaaaggaaaacaaacccagactgctgaagatg |
175 |
Q |
| |
|
||||| |||||| |||| ||||| |||| || ||| |||||| | ||||||||| || |||||||| |||||||||||| |||| |||| ||||||| |
|
|
| T |
1732496 |
tctgataagactgctcaaaagaaaaaatcttggaaggcggacaaaaagaagaagtccgacaaatcttccaaaggaaaacaagcccatactgtcgaagatg |
1732397 |
T |
|
| Q |
176 |
aggtaagtcattc |
188 |
Q |
| |
|
| |||||| |||| |
|
|
| T |
1732396 |
aagtaagttattc |
1732384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0304 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0304
Description:
Target: scaffold0304; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 183
Target Start/End: Original strand, 9875 - 10018
Alignment:
| Q |
40 |
gaagaagatgactctcgaaagatatctagatctaaatctgacaagactcctcacaagaagaaatattcgaaaatggacaagaggaagaagtctgaaaaat |
139 |
Q |
| |
|
||||||||| ||||||||||| ||| | ||| ||||||||||| ||| |||| || ||||||| ||| |||| ||| || | |||||| | |||||| |
|
|
| T |
9875 |
gaagaagatagctctcgaaagacatccaaatcgaaatctgacaaaacttctcataaaaagaaatcttcaaaaacggataaaaagaagaaacccgaaaaac |
9974 |
T |
|
| Q |
140 |
cttctaaaggaaaacaaacccagactgctgaagatgaggtaagt |
183 |
Q |
| |
|
|||| |||||||| ||| ||| |||| || |||||||||||| |
|
|
| T |
9975 |
cttccaaaggaaagcaagcccgcactgtcgaggatgaggtaagt |
10018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0022 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0022
Description:
Target: scaffold0022; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 138
Target Start/End: Complemental strand, 31160 - 31052
Alignment:
| Q |
30 |
agaatatccggaagaagatgactctcgaaagatatctagatctaaatctgacaagactcctcacaagaagaaatattcgaaaatggacaagaggaagaag |
129 |
Q |
| |
|
|||||| || ||||||||| ||||||||||| ||| | ||| ||||||||||| ||| |||| || ||||||| ||| || | |||||| | |||||| |
|
|
| T |
31160 |
agaatacccagaagaagatagctctcgaaagacatccaaatcgaaatctgacaaaacttctcagaaaaagaaatcttcaaagacggacaaaaagaagaaa |
31061 |
T |
|
| Q |
130 |
tctgaaaaa |
138 |
Q |
| |
|
|| |||||| |
|
|
| T |
31060 |
tccgaaaaa |
31052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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