View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6909_low_42 (Length: 206)

Name: NF6909_low_42
Description: NF6909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6909_low_42
NF6909_low_42
[»] chr3 (8 HSPs)
chr3 (18-201)||(25189375-25189557)
chr3 (12-99)||(38216161-38216248)
chr3 (32-100)||(39492363-39492431)
chr3 (12-99)||(39450783-39450874)
chr3 (12-85)||(43071705-43071778)
chr3 (12-99)||(49726565-49726652)
chr3 (12-85)||(14742119-14742190)
chr3 (34-89)||(1451896-1451951)
[»] chr5 (9 HSPs)
chr5 (12-100)||(39741430-39741518)
chr5 (12-100)||(13639528-13639616)
chr5 (12-102)||(3577618-3577707)
chr5 (43-100)||(14626421-14626478)
chr5 (21-98)||(30223864-30223940)
chr5 (21-99)||(13361063-13361141)
chr5 (32-96)||(5548171-5548235)
chr5 (133-196)||(12563952-12564015)
chr5 (32-87)||(40324429-40324484)
[»] chr7 (18 HSPs)
chr7 (12-100)||(37327460-37327548)
chr7 (12-98)||(29366514-29366600)
chr7 (40-100)||(3565561-3565621)
chr7 (134-200)||(2352134-2352200)
chr7 (18-100)||(44857895-44857977)
chr7 (43-100)||(45871786-45871843)
chr7 (43-86)||(20896360-20896403)
chr7 (134-180)||(7325825-7325871)
chr7 (164-201)||(21236389-21236426)
chr7 (32-100)||(23415967-23416033)
chr7 (43-100)||(46303755-46303812)
chr7 (43-91)||(26472000-26472048)
chr7 (43-91)||(26548440-26548488)
chr7 (48-91)||(11752910-11752953)
chr7 (133-200)||(19138775-19138842)
chr7 (133-200)||(20738174-20738241)
chr7 (32-91)||(40717626-40717685)
chr7 (134-195)||(13253979-13254040)
[»] scaffold0122 (1 HSPs)
scaffold0122 (12-98)||(17691-17777)
[»] chr6 (10 HSPs)
chr6 (16-98)||(4837970-4838052)
chr6 (21-98)||(33819885-33819962)
chr6 (12-100)||(6196778-6196866)
chr6 (12-100)||(2236904-2236991)
chr6 (43-89)||(10244483-10244529)
chr6 (12-87)||(9923366-9923440)
chr6 (21-96)||(33446934-33447009)
chr6 (104-133)||(13583542-13583571)
chr6 (132-200)||(17320777-17320845)
chr6 (43-91)||(28587809-28587857)
[»] scaffold0157 (1 HSPs)
scaffold0157 (12-100)||(21212-21299)
[»] chr8 (12 HSPs)
chr8 (40-100)||(3207697-3207757)
chr8 (13-100)||(38255230-38255317)
chr8 (43-100)||(39186232-39186289)
chr8 (40-100)||(13267871-13267931)
chr8 (21-99)||(32089200-32089278)
chr8 (47-85)||(20771623-20771661)
chr8 (47-85)||(20781417-20781455)
chr8 (51-100)||(24587166-24587215)
chr8 (134-178)||(13803097-13803142)
chr8 (134-200)||(12957552-12957620)
chr8 (134-198)||(13528944-13529008)
chr8 (134-198)||(13618483-13618547)
[»] chr4 (14 HSPs)
chr4 (12-100)||(12499178-12499265)
chr4 (32-100)||(44363306-44363374)
chr4 (12-100)||(1351430-1351517)
chr4 (39-91)||(18879175-18879227)
chr4 (32-100)||(43365877-43365945)
chr4 (32-100)||(49888329-49888393)
chr4 (18-87)||(11996319-11996388)
chr4 (134-200)||(25367723-25367789)
chr4 (43-100)||(15562192-15562249)
chr4 (12-100)||(36061180-36061268)
chr4 (134-196)||(30797700-30797763)
chr4 (162-200)||(32022947-32022985)
chr4 (21-63)||(44363084-44363126)
chr4 (100-133)||(14137039-14137072)
[»] chr1 (16 HSPs)
chr1 (12-99)||(12857434-12857521)
chr1 (33-96)||(38275940-38276003)
chr1 (12-90)||(43670860-43670938)
chr1 (12-85)||(43344931-43345004)
chr1 (32-87)||(44166640-44166695)
chr1 (12-78)||(3505161-3505227)
chr1 (12-86)||(15061612-15061686)
chr1 (40-88)||(7191953-7192001)
chr1 (132-200)||(23420474-23420542)
chr1 (135-198)||(15415872-15415935)
chr1 (32-91)||(41666253-41666312)
chr1 (134-196)||(13386127-13386189)
chr1 (43-100)||(43416307-43416364)
chr1 (38-90)||(26767707-26767759)
chr1 (153-195)||(18351142-18351184)
chr1 (45-82)||(24264008-24264045)
[»] chr2 (6 HSPs)
chr2 (32-98)||(35021155-35021221)
chr2 (35-100)||(1602718-1602783)
chr2 (32-91)||(42006538-42006597)
chr2 (18-61)||(43227772-43227815)
chr2 (15-61)||(41650344-41650390)
chr2 (155-198)||(17883470-17883511)
[»] scaffold0633 (1 HSPs)
scaffold0633 (32-91)||(8917-8976)
[»] scaffold0062 (2 HSPs)
scaffold0062 (40-98)||(20303-20356)
scaffold0062 (40-98)||(30471-30524)
[»] scaffold0171 (1 HSPs)
scaffold0171 (134-203)||(7349-7421)
[»] scaffold0018 (1 HSPs)
scaffold0018 (12-91)||(162167-162247)


Alignment Details
Target: chr3 (Bit Score: 164; Significance: 7e-88; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 164; E-Value: 7e-88
Query Start/End: Original strand, 18 - 201
Target Start/End: Complemental strand, 25189557 - 25189375
Alignment:
Q  18 ataaaattgtaatgaaattctcttgaaaacttcatttaaaacatattatatcacaatattttagacaaaatattggatagaggtagtgtcctcgtgagct 117  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||    
T  25189557 ataaaattgtaacgaaattctcttgaaaacttcatttaaaacatattatatcacaatattt-agacaaaatatgggatagaggtagtgtcctcgtgagct 25189459  T
Q  118 taactcggttggtaagtgatggacgaattgacaaatgcatcaattcgtaacaagtaataaagtgataagttatcgtctccacag 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  25189458 taactcggttggtaagtgatggacgaattgacaaatgcatcaattcgtaacaagtaataaagtgataagttctcgtctccacag 25189375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 12 - 99
Target Start/End: Complemental strand, 38216248 - 38216161
Alignment:
Q  12 acatcaataaaattgtaatgaaattctcttgaaaacttcatttaaaacatattatatcacaatattttagacaaaatattggatagag 99  Q
    |||||||| |||||||||  |||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| |||||||    
T  38216248 acatcaatgaaattgtaacaaaattctcttgaaaactttatttaaaacatatcatatcacaatattttagacaaaatatttgatagag 38216161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 32 - 100
Target Start/End: Complemental strand, 39492431 - 39492363
Alignment:
Q  32 aaattctcttgaaaacttcatttaaaacatattatatcacaatattttagacaaaatattggatagagg 100  Q
    |||||| |||||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||||    
T  39492431 aaattcccttgaaaacttcatttgaaacatatcatatcacaatattttagacaaaatatttgatagagg 39492363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 12 - 99
Target Start/End: Original strand, 39450783 - 39450874
Alignment:
Q  12 acatcaataaaattgtaatgaaattctcttgaaaacttcatttaaaacatatta----tatcacaatattttagacaaaatattggatagag 99  Q
    ||||| || |||||||||  |||||||||||||||||||||||||||||||||     |||||||||||||||||||||||||| |||||||    
T  39450783 acatctatgaaattgtaaccaaattctcttgaaaacttcatttaaaacatatttatcgtatcacaatattttagacaaaatatttgatagag 39450874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 12 - 85
Target Start/End: Original strand, 43071705 - 43071778
Alignment:
Q  12 acatcaataaaattgtaatgaaattctcttgaaaacttcatttaaaacatattatatcacaatattttagacaa 85  Q
    ||||| || |||||||||  ||||||||||||||||||| |||||||||||| |||||||||||||||||||||    
T  43071705 acatcgatgaaattgtaacaaaattctcttgaaaacttcgtttaaaacatatcatatcacaatattttagacaa 43071778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 12 - 99
Target Start/End: Original strand, 49726565 - 49726652
Alignment:
Q  12 acatcaataaaattgtaatgaaattctcttgaaaacttcatttaaaacatattatatcacaatattttagacaaaatattggatagag 99  Q
    ||||| || |||||||||  ||||| ||||||||||||||||||||| |||| ||||||||||||| |  |||||||||| |||||||    
T  49726565 acatcgatgaaattgtaacaaaattttcttgaaaacttcatttaaaatatatcatatcacaatattctgtacaaaatatttgatagag 49726652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 12 - 85
Target Start/End: Original strand, 14742119 - 14742190
Alignment:
Q  12 acatcaataaaattgtaatgaaattctcttgaaaacttcatttaaaacatattatatcacaatattttagacaa 85  Q
    ||||| |||||||||||| ||||||| |||||||||||||||||||||  |  |||||||||||||||||||||    
T  14742119 acatcgataaaattgtaacgaaattcccttgaaaacttcatttaaaac--aacatatcacaatattttagacaa 14742190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 34 - 89
Target Start/End: Original strand, 1451896 - 1451951
Alignment:
Q  34 attctcttgaaaacttcatttaaaacatattatatcacaatattttagacaaaata 89  Q
    |||||||| ||||||||||||||||||| || |||||| |||||||| || |||||    
T  1451896 attctcttaaaaacttcatttaaaacattttgtatcaccatattttaaacgaaata 1451951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 2e-26; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 12 - 100
Target Start/End: Original strand, 39741430 - 39741518
Alignment:
Q  12 acatcaataaaattgtaatgaaattctcttgaaaacttcatttaaaacatattatatcacaatattttagacaaaatattggatagagg 100  Q
    ||||| || ||||| ||| ||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||    
T  39741430 acatcgatgaaattataacgaaattcccttgaaaacttcatttaaaacatatcatatcacaatattttagacaaaatatttgatagagg 39741518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 12 - 100
Target Start/End: Original strand, 13639528 - 13639616
Alignment:
Q  12 acatcaataaaattgtaatgaaattctcttgaaaacttcatttaaaacatattatatcacaatattttagacaaaatattggatagagg 100  Q
    ||||| ||||||||||||  |||| ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||  ||||||||    
T  13639528 acatcgataaaattgtaacaaaatgctcttaaaaacttcatttaaaacatatcatatcacaatattttagacaaaatatatgatagagg 13639616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 12 - 102
Target Start/End: Complemental strand, 3577707 - 3577618
Alignment:
Q  12 acatcaataaaattgtaatgaaattctcttgaaaacttcatttaaaacatattatatcacaatattttagacaaaatattggatagaggta 102  Q
    ||||| || |||||||||  |||||| ||||||||||||||||||||||||| ||||||||| ||||||||||||||||| ||||||||||    
T  3577707 acatcgatgaaattgtaacaaaattc-cttgaaaacttcatttaaaacatatcatatcacaaaattttagacaaaatatttgatagaggta 3577618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 43 - 100
Target Start/End: Original strand, 14626421 - 14626478
Alignment:
Q  43 aaaacttcatttaaaacatattatatcacaatattttagacaaaatattggatagagg 100  Q
    ||||||||||||||||||||| |||||||| |||||||||||||||||  ||||||||    
T  14626421 aaaacttcatttaaaacatatcatatcacagtattttagacaaaatatgtgatagagg 14626478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 21 - 98
Target Start/End: Complemental strand, 30223940 - 30223864
Alignment:
Q  21 aaattgtaatgaaattctcttgaaaacttcatttaaaacatattatatcacaatattttagacaaaatattggataga 98  Q
    |||||||||  ||||||  |||||||||||||||||||||| | |||| |||||||||||||||||||||| ||||||    
T  30223940 aaattgtaacaaaattccattgaaaacttcatttaaaacat-tgatataacaatattttagacaaaatatttgataga 30223864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 21 - 99
Target Start/End: Complemental strand, 13361141 - 13361063
Alignment:
Q  21 aaattgtaatgaaattctcttgaaaacttcatttaaaacatattatatcacaatattttagacaaaatattggatagag 99  Q
    |||||||||  ||||||  || |||| ||||||||||||||||  |||||||||||||||||||||||||  |||||||    
T  13361141 aaattgtaacaaaattcctttaaaaatttcatttaaaacatatcgtatcacaatattttagacaaaatatgtgatagag 13361063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 32 - 96
Target Start/End: Complemental strand, 5548235 - 5548171
Alignment:
Q  32 aaattctcttgaaaacttcatttaaaacatattatatcacaatattttagacaaaatattggata 96  Q
    ||||| |||| |||| |||||||||||||||| | ||| ||||||||||||||||||||| ||||    
T  5548235 aaattttcttaaaaatttcatttaaaacatatcacatctcaatattttagacaaaatatttgata 5548171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 133 - 196
Target Start/End: Original strand, 12563952 - 12564015
Alignment:
Q  133 gtgatggacgaattgacaaatgcatcaattcgtaacaagtaataaagtgataagttatcgtctc 196  Q
    ||||||||||| ||| ||| |||| ||| || |||||| ||||||||| |||||||||||||||    
T  12563952 gtgatggacgatttggcaagtgcaccaaatcataacaaataataaagtaataagttatcgtctc 12564015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 32 - 87
Target Start/End: Original strand, 40324429 - 40324484
Alignment:
Q  32 aaattctcttgaaaacttcatttaaaacatattatatcacaatattttagacaaaa 87  Q
    ||||||||||||||||  |||||||||| | ||||||||  |||||||||||||||    
T  40324429 aaattctcttgaaaacaccatttaaaacttgttatatcatcatattttagacaaaa 40324484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 5e-24; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 12 - 100
Target Start/End: Original strand, 37327460 - 37327548
Alignment:
Q  12 acatcaataaaattgtaatgaaattctcttgaaaacttcatttaaaacatattatatcacaatattttagacaaaatattggatagagg 100  Q
    ||||| ||||||||| ||  ||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| ||| ||||||||    
T  37327460 acatcgataaaattgcaacaaaattctcttgaaaacttcatttaaaatatatcatatcacaatattttagacaaaaaatttgatagagg 37327548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 12 - 98
Target Start/End: Original strand, 29366514 - 29366600
Alignment:
Q  12 acatcaataaaattgtaatgaaattctcttgaaaacttcatttaaaacatattatatcacaatattttagacaaaatattggataga 98  Q
    ||||| || |||||||||  ||||| | |||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||||    
T  29366514 acatcgatgaaattgtaacaaaattatgttgaaaactttatttaaaacatatcatatcacaatattttagacaaaatatttgataga 29366600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 40 - 100
Target Start/End: Original strand, 3565561 - 3565621
Alignment:
Q  40 ttgaaaacttcatttaaaacatattatatcacaatattttagacaaaatattggatagagg 100  Q
    |||||||||||||||||||||| ||||||||| ||||||||||||||||||| ||||||||    
T  3565561 ttgaaaacttcatttaaaacatgttatatcaccatattttagacaaaatattagatagagg 3565621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 134 - 200
Target Start/End: Original strand, 2352134 - 2352200
Alignment:
Q  134 tgatggacgaattgacaaatgcatcaattcgtaacaagtaataaagtgataagttatcgtctccaca 200  Q
    |||| ||||||||||||| |||||||| |||||||||||||||||||  ||||||||| ||||||||    
T  2352134 tgattgacgaattgacaagtgcatcaaatcgtaacaagtaataaagtagtaagttatcatctccaca 2352200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 100
Target Start/End: Complemental strand, 44857977 - 44857895
Alignment:
Q  18 ataaaattgtaatgaaattctcttgaaaacttcatttaaaacatattatatcacaatattttagacaaaatattggatagagg 100  Q
    |||||| |||||  |||||  ||||||||||||||||||||||||| | ||||||||||||||||| ||||||| ||| ||||    
T  44857977 ataaaactgtaacaaaatttccttgaaaacttcatttaaaacatatcaaatcacaatattttagactaaatatttgatggagg 44857895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 43 - 100
Target Start/End: Complemental strand, 45871843 - 45871786
Alignment:
Q  43 aaaacttcatttaaaacatattatatcacaatattttagacaaaatattggatagagg 100  Q
    ||||||||||||||||||| ||||||||| |||||||||||||||||||  |||||||    
T  45871843 aaaacttcatttaaaacatgttatatcaccatattttagacaaaatattatatagagg 45871786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 43 - 86
Target Start/End: Complemental strand, 20896403 - 20896360
Alignment:
Q  43 aaaacttcatttaaaacatattatatcacaatattttagacaaa 86  Q
    ||||||||||||||||||||| ||||||||||||||||||||||    
T  20896403 aaaacttcatttaaaacatatcatatcacaatattttagacaaa 20896360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 134 - 180
Target Start/End: Original strand, 7325825 - 7325871
Alignment:
Q  134 tgatggacgaattgacaaatgcatcaattcgtaacaagtaataaagt 180  Q
    |||||||||||||||||| |||||||| |||||||||||||||||||    
T  7325825 tgatggacgaattgacaagtgcatcaaatcgtaacaagtaataaagt 7325871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 164 - 201
Target Start/End: Complemental strand, 21236426 - 21236389
Alignment:
Q  164 gtaacaagtaataaagtgataagttatcgtctccacag 201  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  21236426 gtaacaagtaataaagtaataagttatcgtctccacag 21236389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 32 - 100
Target Start/End: Complemental strand, 23416033 - 23415967
Alignment:
Q  32 aaattctcttgaaaacttcatttaaaacatattatatcacaatattttagacaaaatattggatagagg 100  Q
    ||||| |||| |||||||||||||||||||   |||||||| |||||||||||||||||| ||| ||||    
T  23416033 aaattttcttaaaaacttcatttaaaacatc--atatcacagtattttagacaaaatatttgattgagg 23415967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 43 - 100
Target Start/End: Original strand, 46303755 - 46303812
Alignment:
Q  43 aaaacttcatttaaaacatattatatcacaatattttagacaaaatattggatagagg 100  Q
    ||||||||||||||||||||| | |||||||||||||||| |||| ||  ||||||||    
T  46303755 aaaacttcatttaaaacatatcacatcacaatattttagataaaacatatgatagagg 46303812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 91
Target Start/End: Original strand, 26472000 - 26472048
Alignment:
Q  43 aaaacttcatttaaaacatattatatcacaatattttagacaaaatatt 91  Q
    |||||||||||||||| |||||||||||  ||||||||| |||||||||    
T  26472000 aaaacttcatttaaaatatattatatcatcatattttagtcaaaatatt 26472048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 91
Target Start/End: Original strand, 26548440 - 26548488
Alignment:
Q  43 aaaacttcatttaaaacatattatatcacaatattttagacaaaatatt 91  Q
    |||||||||||||||| |||||||||||  ||||||||| |||||||||    
T  26548440 aaaacttcatttaaaatatattatatcatcatattttagtcaaaatatt 26548488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 48 - 91
Target Start/End: Original strand, 11752910 - 11752953
Alignment:
Q  48 ttcatttaaaacatattatatcacaatattttagacaaaatatt 91  Q
    |||||||||||||| ||||||||| ||| |||||||||||||||    
T  11752910 ttcatttaaaacatgttatatcactataatttagacaaaatatt 11752953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 133 - 200
Target Start/End: Original strand, 19138775 - 19138842
Alignment:
Q  133 gtgatggacgaattgacaaatgcatcaattcgtaacaagtaataaagtgataagttatcgtctccaca 200  Q
    |||||||||||||||||||||||| | | | | |||||||||||||||  ||| |||| |||||||||    
T  19138775 gtgatggacgaattgacaaatgcacctaattgaaacaagtaataaagtagtaaattattgtctccaca 19138842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 133 - 200
Target Start/End: Original strand, 20738174 - 20738241
Alignment:
Q  133 gtgatggacgaattgacaaatgcatcaattcgtaacaagtaataaagtgataagttatcgtctccaca 200  Q
    |||||||||||||||||||||||| | | | | |||||||||||||||  ||| |||| |||||||||    
T  20738174 gtgatggacgaattgacaaatgcacctaattgaaacaagtaataaagtagtaaattattgtctccaca 20738241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 32 - 91
Target Start/End: Original strand, 40717626 - 40717685
Alignment:
Q  32 aaattctcttgaaaacttcatttaaaacatattatatcacaatattttagacaaaatatt 91  Q
    ||||||| || ||||||| ||||||||||| ||||||||  |||||||||| ||||||||    
T  40717626 aaattctattaaaaactttatttaaaacatgttatatcatcatattttagataaaatatt 40717685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 134 - 195
Target Start/End: Complemental strand, 13254040 - 13253979
Alignment:
Q  134 tgatggacgaattgacaaatgcatcaattcgtaacaagtaataaagtgataagttatcgtct 195  Q
    |||||||||||||||||| ||||  ||||   |||||||||||||||  |||||||||||||    
T  13254040 tgatggacgaattgacaagtgcactaatttaaaacaagtaataaagtagtaagttatcgtct 13253979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0122 (Bit Score: 55; Significance: 8e-23; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 12 - 98
Target Start/End: Original strand, 17691 - 17777
Alignment:
Q  12 acatcaataaaattgtaatgaaattctcttgaaaacttcatttaaaacatattatatcacaatattttagacaaaatattggataga 98  Q
    ||||| || |||| ||||| ||| | |||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||    
T  17691 acatcgatgaaatggtaataaaactatcttgaaaacttcatttaaaacatatcatatcacaatattttagacaaaatatttgataga 17777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 8e-23; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 16 - 98
Target Start/End: Original strand, 4837970 - 4838052
Alignment:
Q  16 caataaaattgtaatgaaattctcttgaaaacttcatttaaaacatattatatcacaatattttagacaaaatattggataga 98  Q
    ||||||||||||||  ||||||  |||||||||||||||||||||||| |||||||||||||||| |||||||||| ||||||    
T  4837970 caataaaattgtaacaaaattcatttgaaaacttcatttaaaacatatcatatcacaatattttaaacaaaatatttgataga 4838052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 21 - 98
Target Start/End: Complemental strand, 33819962 - 33819885
Alignment:
Q  21 aaattgtaatgaaattctcttgaaaacttcatttaaaacatattatatcacaatattttagacaaaatattggataga 98  Q
    |||||||||| |||||| ||| |||||||||||||||||||||  |||||||||||||||||||||||||| ||||||    
T  33819962 aaattgtaataaaattcccttaaaaacttcatttaaaacatatcgtatcacaatattttagacaaaatatttgataga 33819885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 12 - 100
Target Start/End: Complemental strand, 6196866 - 6196778
Alignment:
Q  12 acatcaataaaattgtaatgaaattctcttgaaaacttcatttaaaacatattatatcacaatattttagacaaaatattggatagagg 100  Q
    |||| ||| ||||| ||| ||||||| |||||||||||||||||||| |||  ||||||||||||||||||||||||||| ||||||||    
T  6196866 acattaatgaaattataacgaaattcccttgaaaacttcatttaaaatataacatatcacaatattttagacaaaatatttgatagagg 6196778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 100
Target Start/End: Original strand, 2236904 - 2236991
Alignment:
Q  12 acatcaataaaattgtaatgaaattctcttgaaaacttcatttaaaacatattatatcacaatattttagacaaaatattggatagagg 100  Q
    ||||| ||||||||||||  ||| | |||| |||||||||||||||| |||| |||||| |||||||||||||||||||  ||||||||    
T  2236904 acatcgataaaattgtaaaaaaaat-tcttaaaaacttcatttaaaatatatcatatcataatattttagacaaaatatgtgatagagg 2236991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 43 - 89
Target Start/End: Original strand, 10244483 - 10244529
Alignment:
Q  43 aaaacttcatttaaaacatattatatcacaatattttagacaaaata 89  Q
    ||||||||||||||||||| ||||||||  |||||||||||||||||    
T  10244483 aaaacttcatttaaaacatgttatatcatcatattttagacaaaata 10244529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 12 - 87
Target Start/End: Original strand, 9923366 - 9923440
Alignment:
Q  12 acatcaataaaattgtaatgaaattctcttgaaaacttcatttaaaacatattatatcacaatattttagacaaaa 87  Q
    |||||||||||||| |||  |||||||||| |||| ||||||||||| || | ||||||| |||||||||| ||||    
T  9923366 acatcaataaaattataagaaaattctctt-aaaatttcatttaaaaaatgtcatatcactatattttagataaaa 9923440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 21 - 96
Target Start/End: Original strand, 33446934 - 33447009
Alignment:
Q  21 aaattgtaatgaaattctcttgaaaacttcatttaaaacatattatatcacaatattttagacaaaatattggata 96  Q
    |||| |||| |||||| |||| ||||||| ||| |||||||  |||||||  ||||||||||||||||||| ||||    
T  33446934 aaatcgtaaagaaattttcttaaaaacttaattaaaaacatgatatatcaacatattttagacaaaatattagata 33447009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 104 - 133
Target Start/End: Original strand, 13583542 - 13583571
Alignment:
Q  104 tgtcctcgtgagcttaactcggttggtaag 133  Q
    ||||||||||||||||||||||||||||||    
T  13583542 tgtcctcgtgagcttaactcggttggtaag 13583571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 200
Target Start/End: Complemental strand, 17320845 - 17320777
Alignment:
Q  132 agtgatggacgaattgacaaatgcatcaattcgtaacaagtaataaagtgataagttatcgtctccaca 200  Q
    |||||||||| ||||| ||| |||| ||| |||||| ||||||||||||  | |||||| |||||||||    
T  17320845 agtgatggacaaattggcaagtgcaccaaatcgtaataagtaataaagtagttagttattgtctccaca 17320777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 91
Target Start/End: Original strand, 28587809 - 28587857
Alignment:
Q  43 aaaacttcatttaaaacatattatatcacaatattttagacaaaatatt 91  Q
    ||||||||||||||||||| ||||||||  ||||||||| ||| |||||    
T  28587809 aaaacttcatttaaaacatgttatatcatcatattttagtcaagatatt 28587857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0157 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 12 - 100
Target Start/End: Complemental strand, 21299 - 21212
Alignment:
Q  12 acatcaataaaattgtaatgaaattctcttgaaaacttcatttaaaacatattatatcacaatattttagacaaaatattggatagagg 100  Q
    |||||||| |||||||||  |||||| |||||||||||||||||||| |||| ||| ||||||||||||||||||||||| ||||||||    
T  21299 acatcaatgaaattgtaacaaaattcccttgaaaacttcatttaaaa-atatcataccacaatattttagacaaaatatttgatagagg 21212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 1e-21; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 40 - 100
Target Start/End: Complemental strand, 3207757 - 3207697
Alignment:
Q  40 ttgaaaacttcatttaaaacatattatatcacaatattttagacaaaatattggatagagg 100  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||    
T  3207757 ttgaaaacttcatttaaaacatatcatatcacaatattttagacaaaatatttgatagagg 3207697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 13 - 100
Target Start/End: Complemental strand, 38255317 - 38255230
Alignment:
Q  13 catcaataaaattgtaatgaaattctcttgaaaacttcatttaaaacatattatatcacaatattttagacaaaatattggatagagg 100  Q
    |||| |||||||||||| ||||||  || ||||| |||||||||||||||| ||||||||||||||||||  ||||||| ||||||||    
T  38255317 catcgataaaattgtaacgaaatttcctagaaaatttcatttaaaacatatcatatcacaatattttagaacaaatatttgatagagg 38255230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 43 - 100
Target Start/End: Complemental strand, 39186289 - 39186232
Alignment:
Q  43 aaaacttcatttaaaacatattatatcacaatattttagacaaaatattggatagagg 100  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||  ||||||||    
T  39186289 aaaacttcatttaaaacatatgatatcacaatattttagacaaaatatgtgatagagg 39186232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 40 - 100
Target Start/End: Complemental strand, 13267931 - 13267871
Alignment:
Q  40 ttgaaaacttcatttaaaacatattatatcacaatattttagacaaaatattggatagagg 100  Q
    |||||||||||||||||||||| ||||||||| |||||||| |||||||||| || |||||    
T  13267931 ttgaaaacttcatttaaaacatgttatatcaccatattttaaacaaaatattagaaagagg 13267871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 21 - 99
Target Start/End: Original strand, 32089200 - 32089278
Alignment:
Q  21 aaattgtaatgaaattctcttgaaaacttcatttaaaacatattatatcacaatattttagacaaaatattggatagag 99  Q
    |||| ||||| ||||| || | ||||||||||||||||||| ||||||||| |||||| ||||||| |||| |||||||    
T  32089200 aaatcgtaataaaattttcataaaaacttcatttaaaacatgttatatcaccatatttaagacaaattattagatagag 32089278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 47 - 85
Target Start/End: Original strand, 20771623 - 20771661
Alignment:
Q  47 cttcatttaaaacatattatatcacaatattttagacaa 85  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  20771623 cttcatttaaaacatatcatatcacaatattttagacaa 20771661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 47 - 85
Target Start/End: Original strand, 20781417 - 20781455
Alignment:
Q  47 cttcatttaaaacatattatatcacaatattttagacaa 85  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  20781417 cttcatttaaaacatatcatatcacaatattttagacaa 20781455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 51 - 100
Target Start/End: Complemental strand, 24587215 - 24587166
Alignment:
Q  51 atttaaaacatattatatcacaatattttagacaaaatattggatagagg 100  Q
    ||||||||||||| |||||| || ||||||||||||||||| ||||||||    
T  24587215 atttaaaacatatcatatcataacattttagacaaaatatttgatagagg 24587166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 134 - 178
Target Start/End: Original strand, 13803097 - 13803142
Alignment:
Q  134 tgatggacgaa-ttgacaaatgcatcaattcgtaacaagtaataaa 178  Q
    ||||||||||| ||||||| |||||||| |||||||||||||||||    
T  13803097 tgatggacgaaattgacaagtgcatcaaatcgtaacaagtaataaa 13803142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 200
Target Start/End: Complemental strand, 12957620 - 12957552
Alignment:
Q  134 tgatggacgaa-ttgacaaatgcatcaattcgtaacaagtaataaagtgataag-ttatcgtctccaca 200  Q
    ||||||||||| ||||||| ||||  || |||||||||||||||||||  |||| ||||||||||||||    
T  12957620 tgatggacgaaattgacaagtgcactaaatcgtaacaagtaataaagtagtaagcttatcgtctccaca 12957552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 198
Target Start/End: Original strand, 13528944 - 13529008
Alignment:
Q  134 tgatggacgaattgacaaatgcatcaattcgtaacaagtaataaagtgataagttatcgtctcca 198  Q
    |||||| |||||||| || |||| ||| || ||| ||||||||||||  ||||||||||||||||    
T  13528944 tgatgggcgaattgataagtgcaccaaatcataataagtaataaagtagtaagttatcgtctcca 13529008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 198
Target Start/End: Original strand, 13618483 - 13618547
Alignment:
Q  134 tgatggacgaattgacaaatgcatcaattcgtaacaagtaataaagtgataagttatcgtctcca 198  Q
    |||||| |||||||| || |||| ||| || ||| ||||||||||||  ||||||||||||||||    
T  13618483 tgatgggcgaattgataagtgcaccaaatcataataagtaataaagtagtaagttatcgtctcca 13618547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 1e-21; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 12 - 100
Target Start/End: Original strand, 12499178 - 12499265
Alignment:
Q  12 acatcaataaaattgtaatgaaattctcttgaaaacttcatttaaaacatattatatcacaatattttagacaaaatattggatagagg 100  Q
    |||||||| |||||||||  |||||| |||||||||||||||||||| |||| ||| ||||||||||||||||||||||| ||||||||    
T  12499178 acatcaatgaaattgtaacaaaattcccttgaaaacttcatttaaaa-atatcataccacaatattttagacaaaatatttgatagagg 12499265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 32 - 100
Target Start/End: Original strand, 44363306 - 44363374
Alignment:
Q  32 aaattctcttgaaaacttcatttaaaacatattatatcacaatattttagacaaaatattggatagagg 100  Q
    |||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||  |||||||    
T  44363306 aaattcccttgaaaacttcatttaaaacatatcatatcacaatattttagacaaaatattttatagagg 44363374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 100
Target Start/End: Original strand, 1351430 - 1351517
Alignment:
Q  12 acatcaataaaattgtaatgaaattctcttgaaaacttcatttaaaacatattatatcacaatattttagacaaaatattggatagagg 100  Q
    ||||| || |||||||||  |||||  |||||||| ||||||||||||| || ||||||||||||||||||| ||||||| ||||||||    
T  1351430 acatcgatgaaattgtaacaaaatttccttgaaaaattcatttaaaacaaatcatatcacaatattttagac-aaatatttgatagagg 1351517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 39 - 91
Target Start/End: Complemental strand, 18879227 - 18879175
Alignment:
Q  39 cttgaaaacttcatttaaaacatattatatcacaatattttagacaaaatatt 91  Q
    ||||| ||||||||||||||||||| |||||||| ||||||||||||||||||    
T  18879227 cttgataacttcatttaaaacatatcatatcacagtattttagacaaaatatt 18879175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 32 - 100
Target Start/End: Complemental strand, 43365945 - 43365877
Alignment:
Q  32 aaattctcttgaaaacttcatttaaaacatattatatcacaatattttagacaaaatattggatagagg 100  Q
    |||||| ||| ||||||||||||||||||| ||| ||||  ||||||||||||||||||| ||||||||    
T  43365945 aaattcccttaaaaacttcatttaaaacatgttacatcatcatattttagacaaaatattagatagagg 43365877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 32 - 100
Target Start/End: Original strand, 49888329 - 49888393
Alignment:
Q  32 aaattctcttgaaaacttcatttaaaacatattatatcacaatattttagacaaaatattggatagagg 100  Q
    |||||||||||||||||||||||||||||||| |||||||||    ||||||||| |||| ||||||||    
T  49888329 aaattctcttgaaaacttcatttaaaacatatcatatcacaa----ttagacaaagtatttgatagagg 49888393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 87
Target Start/End: Original strand, 11996319 - 11996388
Alignment:
Q  18 ataaaattgtaatgaaattctcttgaaaacttcatttaaaacatattatatcacaatattttagacaaaa 87  Q
    ||||||| ||||  ||||||||||||||| || ||||||||||| ||||||||| |||||||| ||||||    
T  11996319 ataaaatcgtaaaaaaattctcttgaaaattttatttaaaacatgttatatcaccatattttaaacaaaa 11996388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 134 - 200
Target Start/End: Complemental strand, 25367789 - 25367723
Alignment:
Q  134 tgatggacgaattgacaaatgcatcaattcgtaacaagtaataaagtgataagttatcgtctccaca 200  Q
    |||||||||||||||||| |||| ||| ||| |||||||||||||||  |||||||  |||||||||    
T  25367789 tgatggacgaattgacaagtgcaccaaatcgaaacaagtaataaagtagtaagttacagtctccaca 25367723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 43 - 100
Target Start/End: Complemental strand, 15562249 - 15562192
Alignment:
Q  43 aaaacttcatttaaaacatattatatcacaatattttagacaaaatattggatagagg 100  Q
    ||||||||| ||||||||| |||||||||  ||||||||||||| |||| ||||||||    
T  15562249 aaaacttcaattaaaacatgttatatcactgtattttagacaaattattagatagagg 15562192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 100
Target Start/End: Original strand, 36061180 - 36061268
Alignment:
Q  12 acatcaataaaattgtaatgaaattctcttgaaaacttcatttaaaacatattatatcacaatattttagacaaaatattggatagagg 100  Q
    ||||||||||||||| ||  ||||||  || |||  || ||||||||||||| |||||||||||||||||| ||| | || ||||||||    
T  36061180 acatcaataaaattgcaacaaaattcctttaaaatttttatttaaaacatatcatatcacaatattttagataaattttttgatagagg 36061268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 134 - 196
Target Start/End: Complemental strand, 30797763 - 30797700
Alignment:
Q  134 tgatggacgaattgacaaatgcatcaattcgtaacaagtaataaagtgataag-ttatcgtctc 196  Q
    |||| ||||||||| ||| |||||||| |||||||||||||||||||  |||| ||||||||||    
T  30797763 tgatcgacgaattggcaagtgcatcaaatcgtaacaagtaataaagtagtaagtttatcgtctc 30797700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 200
Target Start/End: Complemental strand, 32022985 - 32022947
Alignment:
Q  162 tcgtaacaagtaataaagtgataagttatcgtctccaca 200  Q
    ||||||||||||||||||| |||||||||| ||||||||    
T  32022985 tcgtaacaagtaataaagtaataagttatcttctccaca 32022947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 63
Target Start/End: Original strand, 44363084 - 44363126
Alignment:
Q  21 aaattgtaatgaaattctcttgaaaacttcatttaaaacatat 63  Q
    |||||||||  |||||| |||||||||||||||||||||||||    
T  44363084 aaattgtaacaaaattcccttgaaaacttcatttaaaacatat 44363126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 100 - 133
Target Start/End: Original strand, 14137039 - 14137072
Alignment:
Q  100 gtagtgtcctcgtgagcttaactcggttggtaag 133  Q
    |||||||||||||||||||||||| |||||||||    
T  14137039 gtagtgtcctcgtgagcttaactcagttggtaag 14137072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 5e-21; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 12 - 99
Target Start/End: Original strand, 12857434 - 12857521
Alignment:
Q  12 acatcaataaaattgtaatgaaattctcttgaaaacttcatttaaaacatattatatcacaatattttagacaaaatattggatagag 99  Q
    ||||||||||||||| ||| || |||  |||||||||||||||||||||||| ||||||||||||| ||||||||| ||| |||||||    
T  12857434 acatcaataaaattgcaataaagttcctttgaaaacttcatttaaaacatatcatatcacaatattctagacaaaaaatttgatagag 12857521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 33 - 96
Target Start/End: Original strand, 38275940 - 38276003
Alignment:
Q  33 aattctcttgaaaacttcatttaaaacatattatatcacaatattttagacaaaatattggata 96  Q
    ||||| ||||||||||||||||||||||||| ||||||||||||||||||||| ||||| ||||    
T  38275940 aattcccttgaaaacttcatttaaaacatatcatatcacaatattttagacaacatatttgata 38276003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 12 - 90
Target Start/End: Original strand, 43670860 - 43670938
Alignment:
Q  12 acatcaataaaattgtaatgaaattctcttgaaaacttcatttaaaacatattatatcacaatattttagacaaaatat 90  Q
    ||||| || |||||||||  |||||| ||| ||||||||||| |||||||||  |||||||||||||||||||||||||    
T  43670860 acatcgatgaaattgtaacaaaattcccttaaaaacttcattaaaaacatatagtatcacaatattttagacaaaatat 43670938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 12 - 85
Target Start/End: Original strand, 43344931 - 43345004
Alignment:
Q  12 acatcaataaaattgtaatgaaattctcttgaaaacttcatttaaaacatattatatcacaatattttagacaa 85  Q
    |||||||| |||||||||  || || | || ||||||||||||||||||||| |||||||||||||||||||||    
T  43344931 acatcaatgaaattgtaacaaattttttttaaaaacttcatttaaaacatatcatatcacaatattttagacaa 43345004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 32 - 87
Target Start/End: Original strand, 44166640 - 44166695
Alignment:
Q  32 aaattctcttgaaaacttcatttaaaacatattatatcacaatattttagacaaaa 87  Q
    |||||| ||| ||||||| ||||||||||||| |||||||||||||||||||||||    
T  44166640 aaattcccttaaaaactttatttaaaacatatcatatcacaatattttagacaaaa 44166695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 12 - 78
Target Start/End: Complemental strand, 3505227 - 3505161
Alignment:
Q  12 acatcaataaaattgtaatgaaattctcttgaaaacttcatttaaaacatattatatcacaatattt 78  Q
    ||||| ||||||||||||  |||||||||| |||||| ||||||||| |||| ||||||||||||||    
T  3505227 acatcgataaaattgtaacaaaattctctttaaaactccatttaaaaaatatcatatcacaatattt 3505161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 12 - 86
Target Start/End: Original strand, 15061612 - 15061686
Alignment:
Q  12 acatcaataaaattgtaatgaaattctcttgaaaacttcatttaaaacatattatatcacaatattttagacaaa 86  Q
    ||||| || |||||||||  |||||  ||| ||||||||||||||||||||| ||||||||||||| ||||||||    
T  15061612 acatcgatgaaattgtaacaaaatttccttaaaaacttcatttaaaacatatcatatcacaatattctagacaaa 15061686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 40 - 88
Target Start/End: Complemental strand, 7192001 - 7191953
Alignment:
Q  40 ttgaaaacttcatttaaaacatattatatcacaatattttagacaaaat 88  Q
    ||||||||| |||||||||||| ||||||||| ||||||||||||||||    
T  7192001 ttgaaaactccatttaaaacatgttatatcaccatattttagacaaaat 7191953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 132 - 200
Target Start/End: Original strand, 23420474 - 23420542
Alignment:
Q  132 agtgatggacgaattgacaaatgcatcaattcgtaacaagtaataaagtgataagttatcgtctccaca 200  Q
    |||||| ||||||||| ||| || | ||| |||||||||||||||||||  ||||||||||||||||||    
T  23420474 agtgatagacgaattggcaagtgtaccaaatcgtaacaagtaataaagtagtaagttatcgtctccaca 23420542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 135 - 198
Target Start/End: Original strand, 15415872 - 15415935
Alignment:
Q  135 gatggacgaattgacaaatgcatcaattcgtaacaagtaataaagtgataagttatcgtctcca 198  Q
    ||||||||||||||||| || ||||| |||||||||||||||||    ||||||||||||||||    
T  15415872 gatggacgaattgacaagtgtatcaagtcgtaacaagtaataaaacagtaagttatcgtctcca 15415935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 32 - 91
Target Start/End: Original strand, 41666253 - 41666312
Alignment:
Q  32 aaattctcttgaaaacttcatttaaaacatattatatcacaatattttagacaaaatatt 91  Q
    ||||| |||||||||||||||||||||||| |||| |||  |||||||||| ||||||||    
T  41666253 aaattttcttgaaaacttcatttaaaacatgttatgtcatcatattttagataaaatatt 41666312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 134 - 196
Target Start/End: Original strand, 13386127 - 13386189
Alignment:
Q  134 tgatggacgaattgacaaatgcatcaattcgtaacaagtaataaagtgataagttatcgtctc 196  Q
    |||||||||||||||||| | |  |||   |||||||||||||||||||||||||||||||||    
T  13386127 tgatggacgaattgacaagtacgccaaaatgtaacaagtaataaagtgataagttatcgtctc 13386189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 43 - 100
Target Start/End: Complemental strand, 43416364 - 43416307
Alignment:
Q  43 aaaacttcatttaaaacatattatatcacaatattttagacaaaatattggatagagg 100  Q
    |||| |||||||||||||| ||||||||| |||||||||||||| ||||  |||||||    
T  43416364 aaaatttcatttaaaacatgttatatcaccatattttagacaaattattaaatagagg 43416307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 90
Target Start/End: Complemental strand, 26767759 - 26767707
Alignment:
Q  38 tcttgaaaacttcatttaaaacatattatatcacaatattttagacaaaatat 90  Q
    |||| ||||||||||||| ||||| ||||||||  ||||||||||||||||||    
T  26767759 tcttaaaaacttcatttagaacatgttatatcatcatattttagacaaaatat 26767707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 195
Target Start/End: Complemental strand, 18351184 - 18351142
Alignment:
Q  153 tgcatcaattcgtaacaagtaataaagtgataagttatcgtct 195  Q
    ||||||||  ||||| |||||||||||||||||||||||||||    
T  18351184 tgcatcaaaccgtaataagtaataaagtgataagttatcgtct 18351142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 45 - 82
Target Start/End: Complemental strand, 24264045 - 24264008
Alignment:
Q  45 aacttcatttaaaacatattatatcacaatattttaga 82  Q
    ||||||||||||||||||| ||||||| ||||||||||    
T  24264045 aacttcatttaaaacatatcatatcaccatattttaga 24264008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 2e-20; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 32 - 98
Target Start/End: Original strand, 35021155 - 35021221
Alignment:
Q  32 aaattctcttgaaaacttcatttaaaacatattatatcacaatattttagacaaaatattggataga 98  Q
    ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| ||| ||||||    
T  35021155 aaattttcttgaaaacttcatttaaaacatatcatatcacaatattttagacaaaaaatttgataga 35021221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 35 - 100
Target Start/End: Complemental strand, 1602783 - 1602718
Alignment:
Q  35 ttctcttgaaaacttcatttaaaacatattatatcacaatattttagacaaaatattggatagagg 100  Q
    ||||||| ||||||| ||| ||||||||| ||||||| ||||||||||| ||||||| ||| ||||    
T  1602783 ttctcttaaaaacttaattgaaaacatatcatatcaccatattttagaccaaatatttgatggagg 1602718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 32 - 91
Target Start/End: Original strand, 42006538 - 42006597
Alignment:
Q  32 aaattctcttgaaaacttcatttaaaacatattatatcacaatattttagacaaaatatt 91  Q
    ||||||| |||||||||| ||||||||||| | ||||||  ||||||| |||||||||||    
T  42006538 aaattcttttgaaaacttaatttaaaacatgtcatatcatcatattttcgacaaaatatt 42006597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 43227772 - 43227815
Alignment:
Q  18 ataaaattgtaatgaaattctcttgaaaacttcatttaaaacat 61  Q
    |||||||||| |  ||||||||||||||||||||||||||||||    
T  43227772 ataaaattgttagaaaattctcttgaaaacttcatttaaaacat 43227815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 61
Target Start/End: Complemental strand, 41650390 - 41650344
Alignment:
Q  15 tcaataaaattgtaatgaaattctcttgaaaacttcatttaaaacat 61  Q
    |||||||| |||| |  ||||||||||||||||||||||||||||||    
T  41650390 tcaataaagttgttagaaaattctcttgaaaacttcatttaaaacat 41650344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 198
Target Start/End: Original strand, 17883470 - 17883511
Alignment:
Q  155 catcaattcgtaacaagtaataaagtgataagttatcgtctcca 198  Q
    |||||| ||||||||||||||||||||  |||||||||||||||    
T  17883470 catcaaatcgtaacaagtaataaagtg--aagttatcgtctcca 17883511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0633 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0633
Description:

Target: scaffold0633; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 32 - 91
Target Start/End: Complemental strand, 8976 - 8917
Alignment:
Q  32 aaattctcttgaaaacttcatttaaaacatattatatcacaatattttagacaaaatatt 91  Q
    ||||| |||||||||||||||||||||||| |||| |||  |||||||||| ||||||||    
T  8976 aaattttcttgaaaacttcatttaaaacatgttatgtcatcatattttagataaaatatt 8917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 98
Target Start/End: Complemental strand, 20356 - 20303
Alignment:
Q  40 ttgaaaacttcatttaaaacatattatatcacaatattttagacaaaatattggataga 98  Q
    ||||||| ||||||||||||||||     ||||||||||||||||||||||| ||||||    
T  20356 ttgaaaatttcatttaaaacatat-----cacaatattttagacaaaatatttgataga 20303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 98
Target Start/End: Complemental strand, 30524 - 30471
Alignment:
Q  40 ttgaaaacttcatttaaaacatattatatcacaatattttagacaaaatattggataga 98  Q
    ||||||| ||||||||||||||||     ||||||||||||||||||||||| ||||||    
T  30524 ttgaaaatttcatttaaaacatat-----cacaatattttagacaaaatatttgataga 30471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 203
Target Start/End: Complemental strand, 7421 - 7349
Alignment:
Q  134 tgatggacgaa-ttgacaaatgcatcaattcgtaacaagtaataaagtgataag-ttatcg-tctccacaggt 203  Q
    ||||||||||| ||||||| |||| ||| |||||||||||||||||||  |||| |||||| |||||||||||    
T  7421 tgatggacgaaattgacaagtgcaccaaatcgtaacaagtaataaagtagtaagtttatcgttctccacaggt 7349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 91
Target Start/End: Complemental strand, 162247 - 162167
Alignment:
Q  12 acatcaataaaattgtaatgaaattctcttgaaaacttcatttaaaacatattatatcacaat-attttagacaaaatatt 91  Q
    ||||||||||||||||||  |||||||  | |||||||| |||||||||| | |||| || || ||||||||| |||||||    
T  162247 acatcaataaaattgtaagaaaattcttctaaaaacttcgtttaaaacatgtcatattaccataattttagaccaaatatt 162167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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