View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6909_low_6 (Length: 471)
Name: NF6909_low_6
Description: NF6909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6909_low_6 |
 | |
|
| [»] scaffold0007 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 379; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 20 - 454
Target Start/End: Original strand, 31060960 - 31061393
Alignment:
| Q |
20 |
gacacacatcagtgtccgacattaacacggcatacataattacattgaattatgtgtttctcgaattattatatgtgtcgacgtgttagtgtccgtgtgt |
119 |
Q |
| |
|
||||| ||||||||| |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31060960 |
gacacgcatcagtgtacgacatcagcacggcatacataattacattgaattatgtgtttctcgaattattatatgtgtcgacgtgttagtgtccgtgtgt |
31061059 |
T |
|
| Q |
120 |
gtatcagtgtctcataggatataagtaacaaacttctcaatcctacattatttattcccttcaaaacatgcagcacaactacagagacagagaaactagt |
219 |
Q |
| |
|
||||| |||| |||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| ||||| |
|
|
| T |
31061060 |
gtatctgtgtttcataggatataggtaacaaacttctcaatcctacattatttcttcccttcaaaacatgcagcacaactacacagacagagaa-ctagt |
31061158 |
T |
|
| Q |
220 |
attaagcgtcagaaaaataatttccacaaaacagaaatcaactttagttctaaactttcaaaacatataaaagtagtttacaaatggaatcctctagtct |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31061159 |
attaagcgtcagaaaaataatttccacaaaacagaaatgaactttagttctaaactttcaaaacatataaaagtagtttacaaatggaatcctctagtct |
31061258 |
T |
|
| Q |
320 |
agtaatacaattctttgatgaagatgctaatctcttttataaaatttcatcgactcatcagcaatttctctgtcatagtatttgacaaacaaatttaaaa |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31061259 |
agtaatacaattctttgatgaagatgctaatctcttttataaaatttcatcgactcatcagcaatttctctgtcatagtatttgacaaacaaatttaaaa |
31061358 |
T |
|
| Q |
420 |
acctctcctctgccaaccttaaagctttaagtaat |
454 |
Q |
| |
|
|||||||||||||||||| ||| |||||||||||| |
|
|
| T |
31061359 |
acctctcctctgccaaccctaatgctttaagtaat |
31061393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 56 - 117
Target Start/End: Original strand, 15489747 - 15489810
Alignment:
| Q |
56 |
taattacattgaattatgtg--tttctcgaattattatatgtgtcgacgtgttagtgtccgtgt |
117 |
Q |
| |
|
||||||||||||||| ||| ||| || |||||||| ||||||||||||||||||||||||| |
|
|
| T |
15489747 |
taattacattgaattgtgtaattttttcaaattattagttgtgtcgacgtgttagtgtccgtgt |
15489810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 7e-16; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 227 - 317
Target Start/End: Original strand, 3414037 - 3414130
Alignment:
| Q |
227 |
gtcagaaaaataatttccacaaaacagaaatcaactttagttctaaac---tttcaaaacatataaaagtagtttacaaatggaatcctctagt |
317 |
Q |
| |
|
||||||||||||||| |||||||| ||||||||| || || ||||||| ||||||| ||||||||||||||| | ||| ||||||||||||| |
|
|
| T |
3414037 |
gtcagaaaaataattaccacaaaatagaaatcaaattcagctctaaacttatttcaaagcatataaaagtagttcagaaagggaatcctctagt |
3414130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 55 - 117
Target Start/End: Complemental strand, 36934715 - 36934651
Alignment:
| Q |
55 |
ataattacattgaattatgtg--tttctcgaattattatatgtgtcgacgtgttagtgtccgtgt |
117 |
Q |
| |
|
||||||||| ||||||||||| ||| ||||||||||| |||||||||||||||||||||||| |
|
|
| T |
36934715 |
ataattacaatgaattatgtgattttttcgaattattagcggtgtcgacgtgttagtgtccgtgt |
36934651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 353 - 429
Target Start/End: Original strand, 3414177 - 3414253
Alignment:
| Q |
353 |
cttttataaaatttcatcgactcatcagcaatttctctgtcatagtatttgacaaacaaatttaaaaacctctcctc |
429 |
Q |
| |
|
||||||||||||| ||| |||||||||||||||| | |||| | || |||||||| ||| |||||||||||||| |
|
|
| T |
3414177 |
cttttataaaattccattaactcatcagcaatttccttatcatggcatctgacaaacgtattgaaaaacctctcctc |
3414253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 59 - 117
Target Start/End: Original strand, 13287417 - 13287477
Alignment:
| Q |
59 |
ttacattgaattatgtg--tttctcgaattattatatgtgtcgacgtgttagtgtccgtgt |
117 |
Q |
| |
|
||||| ||||||||||| ||| || ||||||||| ||||||||||||||||||||||||| |
|
|
| T |
13287417 |
ttacactgaattatgtgattttttcaaattattatctgtgtcgacgtgttagtgtccgtgt |
13287477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 56 - 117
Target Start/End: Complemental strand, 41995515 - 41995452
Alignment:
| Q |
56 |
taattacattgaattatgtg--tttctcgaattattatatgtgtcgacgtgttagtgtccgtgt |
117 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||||||| ||||||| ||||| |||||| |||| |
|
|
| T |
41995515 |
taattacattgaattatgtgattttttcgaattattagttgtgtcggcgtgtcagtgtctgtgt |
41995452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 55 - 117
Target Start/End: Original strand, 225282 - 225346
Alignment:
| Q |
55 |
ataattacattgaattatgtg--tttctcgaattattatatgtgtcgacgtgttagtgtccgtgt |
117 |
Q |
| |
|
|||||||||||| ||||||| |||||| ||||||||| ||||||| ||||| ||||||||||| |
|
|
| T |
225282 |
ataattacattgtattatgtcattttctcaaattattatctgtgtcggcgtgtcagtgtccgtgt |
225346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 56 - 117
Target Start/End: Original strand, 38078676 - 38078739
Alignment:
| Q |
56 |
taattacattgaattatgtg--tttctcgaattattatatgtgtcgacgtgttagtgtccgtgt |
117 |
Q |
| |
|
|||||||||||||||||||| ||| || |||||||| ||||||||||||| ||||| ||||| |
|
|
| T |
38078676 |
taattacattgaattatgtgattttttcaaattattagctgtgtcgacgtgtcagtgttcgtgt |
38078739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University