View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6909_low_7 (Length: 463)
Name: NF6909_low_7
Description: NF6909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6909_low_7 |
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| [»] chr2 (1 HSPs) |
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| [»] scaffold0361 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 17 - 463
Target Start/End: Original strand, 17832169 - 17832620
Alignment:
| Q |
17 |
agtgatgattttgttgtatttgatgagtttgtacaaacgaatatgtcgaagctgtaactgtggaaaggtgctggatttgttgatgtgttagttgaaggat |
116 |
Q |
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| T |
17832169 |
agtgatgaatttgttgtatttgatgagtctgtacaaacgaatatgtcgaagctgtaactgtggaaaggtgctggatttgttgatgtgttagttgaaggat |
17832268 |
T |
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| Q |
117 |
gttgtttgtcattagttaaccgttttaatttagaatggattctgtcaaaatgcattgcccattcaagagtttgaaattactgtgatcaattagttgggct |
216 |
Q |
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| T |
17832269 |
gttgtttgtcattagttaaccgttttaatttagaatggattctgtcaaaatgcattgcccattcaagagtttgaaattactgtgatcaattagttgggct |
17832368 |
T |
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| Q |
217 |
atatttaaaaatgaataatgagatttgattactagctgcagcattacttctaattaactcctagagctccgtatgaagtg-----nnnnnnnnnnnacgc |
311 |
Q |
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| T |
17832369 |
atatttgaaaatgaataatgagatttgattactagctgcaggattacttctaattaactcctagagctccctatgaagtgttttttttttttttttacgc |
17832468 |
T |
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| Q |
312 |
atatgaagtgttaaatattatgttattagtttgtatgctattagcaaacccattttatcattacaacattttcaagttaataataaaatgtatagatttc |
411 |
Q |
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| T |
17832469 |
atatgaagtgttaaatattatgttattagtttgtatgctattagcaaacccattttatcattacaacattttcaagttaataataaaatgtatagatttc |
17832568 |
T |
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| Q |
412 |
cattattggtgatggctttgataaatttataatattatgtttcctaatggac |
463 |
Q |
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| T |
17832569 |
cattattggtgatggctgtgataaatttataatattatgcttcctaatggac |
17832620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0361 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: scaffold0361
Description:
Target: scaffold0361; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 81 - 135
Target Start/End: Complemental strand, 8746 - 8692
Alignment:
| Q |
81 |
aaggtgctggatttgttgatgtgttagttgaaggatgttgtttgtcattagttaa |
135 |
Q |
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| T |
8746 |
aaggtgatggatttgttgatccgttagtggaaggatgttgtttgtcattagttaa |
8692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0361; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 56 - 108
Target Start/End: Complemental strand, 8513 - 8461
Alignment:
| Q |
56 |
aatatgtcgaagctgtaactgtggaaaggtgctggatttgttgatgtgttagt |
108 |
Q |
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| T |
8513 |
aatatgtcgaaactctaaatgtcgtaaggtgctggttttgttgatgtgttagt |
8461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 56 - 108
Target Start/End: Complemental strand, 53555217 - 53555165
Alignment:
| Q |
56 |
aatatgtcgaagctgtaactgtggaaaggtgctggatttgttgatgtgttagt |
108 |
Q |
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| T |
53555217 |
aatatgtcgaaactctaaatgtagtaaggtgctggttttgttgatgtgttagt |
53555165 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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