View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6909_low_9 (Length: 442)
Name: NF6909_low_9
Description: NF6909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6909_low_9 |
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| [»] scaffold0267 (2 HSPs) |
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| [»] scaffold0128 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 23 - 424
Target Start/End: Complemental strand, 33637698 - 33637297
Alignment:
| Q |
23 |
gagtttggagttcaagagtcttggactcgattggtgaatgttagctatgttcaattgggtatttctatgaatctcaatttagttgattggttgtttccgg |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |
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| T |
33637698 |
gagtttggagttcaagagtcttggactcgattggtgaatgttagctatgttcaattgggtatttgtgtgaatctcaatttagttgattggttgtttccgg |
33637599 |
T |
|
| Q |
123 |
tttgtctctctgaaaatggaaatgtcatgttgatggctagcaaaggagcttttgatgatattattatgtataataggagagatgataaagctgaacatat |
222 |
Q |
| |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| |
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| T |
33637598 |
tttgtctctctgaaaatggaaatgtcatgttgctggctagcaaaggagcttttgatgatattagtatgtataataggagagatgatagagctgaacatat |
33637499 |
T |
|
| Q |
223 |
tgaacttcttgacaaccaaatttggtatgctgatgaacatatgaagagcttggttttgccccatcctcttccacattaagcttctatgcaacaactgttt |
322 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| ||||| |
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| T |
33637498 |
tgaacttcttgacaaccaaatttggtatgctgatgaacatatgaagagcttggtttttccccgtcctcttccacattaagcttctatgcaacaattgttt |
33637399 |
T |
|
| Q |
323 |
gtattttgaatttatgttaggtcgtgcaagtagtgtgatgactattaatggttccttaattgtgttttcaatagatagtttaattattttgttggatgat |
422 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
33637398 |
gtattttgaatttatgttaggtcgtgcaagtagtgtgatgactattaatggttccttaattgtgttttcaatagatagtttaactattttgttggatgat |
33637299 |
T |
|
| Q |
423 |
tc |
424 |
Q |
| |
|
|| |
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|
| T |
33637298 |
tc |
33637297 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0267 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: scaffold0267
Description:
Target: scaffold0267; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 234 - 423
Target Start/End: Original strand, 13615 - 13805
Alignment:
| Q |
234 |
acaaccaaatttggtatgctgatgaacatatgaagagcttggttttgccccatcctcttccacattaagcttctatgcaacaactgtttgtattt-tgaa |
332 |
Q |
| |
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||||||||||| | |||||||||||||||||| |||||||||||||||| ||||| |||||||||| || |||||||||| ||||||| ||| |||| |
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| T |
13615 |
acaaccaaattcgttatgctgatgaacatatgcagagcttggttttgccttgtcctcgtccacattaatctcgtatgcaacaaatgtttgtttttctgaa |
13714 |
T |
|
| Q |
333 |
tttatgttaggtcgtgcaagtagtgtgatgactattaatggttccttaattgtgttttcaatagatagtttaattattttgttggatgatt |
423 |
Q |
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|||||||||||| ||||| | | |||| ||||| ||||||| |||||| ||||||| |||||||||| | ||||||||||||||||| |
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|
| T |
13715 |
tttatgttaggttgtgcatttggcatgatatctattgatggttctttaattatgttttccttagatagtttgactattttgttggatgatt |
13805 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0267; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 23 - 75
Target Start/End: Original strand, 13413 - 13465
Alignment:
| Q |
23 |
gagtttggagttcaagagtcttggactcgattggtgaatgttagctatgttca |
75 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
13413 |
gagtttggagttcaagagtcttggactcagttggtgaatgttagctatgttca |
13465 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 234 - 423
Target Start/End: Original strand, 3838134 - 3838324
Alignment:
| Q |
234 |
acaaccaaatttggtatgctgatgaacatatgaagagcttggttttgccccatcctcttccacattaagcttctatgcaacaactgtttgtattt-tgaa |
332 |
Q |
| |
|
||||||||||| | |||||||| ||||||||| |||||||||||||||| ||||| |||||||||| || |||||||||||||||||| ||| |||| |
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| T |
3838134 |
acaaccaaattcgttatgctgaggaacatatgcagagcttggttttgccttgtcctcatccacattaatctcgtatgcaacaactgtttgtttttctgaa |
3838233 |
T |
|
| Q |
333 |
tttatgttaggtcgtgcaagtagtgtgatgactattaatggttccttaattgtgttttcaatagatagtttaattattttgttggatgatt |
423 |
Q |
| |
|
|||||||||||| |||| | | |||| ||||| ||||||| |||||| ||||||| |||||||||| | ||||||| ||||||||| |
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|
| T |
3838234 |
tttatgttaggttttgcatttggcatgatatctattgatggttctttaattatgttttccttagatagtttgactattttgctggatgatt |
3838324 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 23 - 71
Target Start/End: Original strand, 3837932 - 3837980
Alignment:
| Q |
23 |
gagtttggagttcaagagtcttggactcgattggtgaatgttagctatg |
71 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
3837932 |
gagtttggagttcaagagtcttggactcagttggtgaatgttagctatg |
3837980 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 7e-19; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 184 - 312
Target Start/End: Original strand, 29125102 - 29125230
Alignment:
| Q |
184 |
tattatgtataataggagagatgataaagctgaacatattgaacttcttgacaaccaaatttggtatgctgatgaacatatgaagagcttggttttgccc |
283 |
Q |
| |
|
||||||||||| |||||||||||||| || | |||||| |||||| || |||||||| ||||||| ||||||||||| |||| ||||||||||| |
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|
| T |
29125102 |
tattatgtatagtaggagagatgatagagttagtcatattagacttctcaaccaccaaattatgtatgctcatgaacatatgtagagtttggttttgcct |
29125201 |
T |
|
| Q |
284 |
catcctcttccacattaagcttctatgca |
312 |
Q |
| |
|
| ||||| ||| ||||||||||||||||| |
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| T |
29125202 |
cttcctcatccgcattaagcttctatgca |
29125230 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 243 - 423
Target Start/End: Original strand, 29126661 - 29126841
Alignment:
| Q |
243 |
tttggtatgctgatgaacatatgaagagcttggttttgccccatcctcttccacattaagcttctatgcaacaactgtttg-tattttgaatttatgtta |
341 |
Q |
| |
|
||||||||| | |||||||||| | |||||| ||||||| |||| |||| |||||| ||||||||||||||| |||| | |||| ||| || ||| |
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|
| T |
29126661 |
tttggtatgtcggtgaacatatgcatagcttgattttgcctcatctcattcc-cattaaacttctatgcaacaacaatttgatttttttaatatacatta |
29126759 |
T |
|
| Q |
342 |
ggtcgtgcaagtagtgtgatgactattaatggttccttaattgtgttttcaatagatagtttaattattttgttggatgatt |
423 |
Q |
| |
|
|| |||||||| ||||||| |||||| | |||||||||||||||||| || ||||||| ||||||||||| ||||||| |
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|
| T |
29126760 |
agttgtgcaagtggtgtgataactattgaatattccttaattgtgttttccttaaatagtttgattattttgttagatgatt |
29126841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 68
Target Start/End: Original strand, 29124928 - 29124973
Alignment:
| Q |
23 |
gagtttggagttcaagagtcttggactcgattggtgaatgttagct |
68 |
Q |
| |
|
|||||||||||||||||||||||||| | ||||||||| |||||| |
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|
| T |
29124928 |
gagtttggagttcaagagtcttggacccacttggtgaatattagct |
29124973 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 183 - 422
Target Start/End: Complemental strand, 13784247 - 13784008
Alignment:
| Q |
183 |
ttattatgtataataggagagatgataaagctgaacatattgaacttcttgacaaccaaatttggtatgctgatgaacatatgaagagcttggttttgcc |
282 |
Q |
| |
|
|||||||||||||| |||||||||||| || |||| | || || ||| | ||||| |||||||| || |||||||||||| | |||||||||||||| |
|
|
| T |
13784247 |
ttattatgtataatcggagagatgatatagttgaatttcttcaatttcctaacaacaaaatttgggcggccgatgaacatatgcatagcttggttttgcc |
13784148 |
T |
|
| Q |
283 |
ccatcctcttccacattaagcttctatgcaacaactgtttgtattttgaatttatgttaggtcgtgcaagtagtgtgatgactattaatggttccttaat |
382 |
Q |
| |
|
||| ||| ||||||||||||| || | || ||| ||||||| ||| ||| || || || || |||| | |||||| |||| |||||||||||| |
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|
| T |
13784147 |
tcattctcatccacattaagctcctctacatcaattgtttgtttttagaacttttgctaaactatgaaagtggcgtgatggctatcgatggttccttaaa |
13784048 |
T |
|
| Q |
383 |
tgtgttttcaatagatagtttaattattttgttggatgat |
422 |
Q |
| |
|
||||||||| ||| |||||| | |||||||||| ||||| |
|
|
| T |
13784047 |
tgtgttttccttagctagtttgactattttgttgtatgat |
13784008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 72
Target Start/End: Complemental strand, 13784407 - 13784358
Alignment:
| Q |
23 |
gagtttggagttcaagagtcttggactcgattggtgaatgttagctatgt |
72 |
Q |
| |
|
|||| |||||||||||| ||||||||||| ||||||||||| || ||||| |
|
|
| T |
13784407 |
gagtatggagttcaagaatcttggactcggttggtgaatgtcagttatgt |
13784358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 23 - 71
Target Start/End: Complemental strand, 20476017 - 20475969
Alignment:
| Q |
23 |
gagtttggagttcaagagtcttggactcgattggtgaatgttagctatg |
71 |
Q |
| |
|
|||||||| |||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
20476017 |
gagtttggggttcaagagtcttggactcggttggtgaatgttagctatg |
20475969 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 249 - 424
Target Start/End: Complemental strand, 20475806 - 20475630
Alignment:
| Q |
249 |
atgctgatgaacatatgaagagcttggttttgccccatcctcttccacattaagcttctatgcaacaactgtttgtattt-tgaatttatgttaggtcgt |
347 |
Q |
| |
|
||||| |||| |||||| |||||||||||||||| | |||| |||| |||||||| | ||||||||||| ||| | ||| ||||||||| |||| | | |
|
|
| T |
20475806 |
atgctcatgagcatatgcagagcttggttttgcctcgtccttgtccaaattaagctgcaatgcaacaactatttatttttctgaatttattttagattat |
20475707 |
T |
|
| Q |
348 |
gcaagtagtgtgatgactattaatggttccttaattgtgttttcaatagatagtttaattattttgttggatgattc |
424 |
Q |
| |
|
| |||| | || | || ||| |||||| ||||||||||||||| | | |||||| | ||||||||||||||||| |
|
|
| T |
20475706 |
gtaagtggcatgtttacgattgatggttacttaattgtgttttccttggctagttttacaattttgttggatgattc |
20475630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0128 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: scaffold0128
Description:
Target: scaffold0128; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 183 - 309
Target Start/End: Complemental strand, 33907 - 33781
Alignment:
| Q |
183 |
ttattatgtataataggagagatgataaagctgaacatattgaacttcttgacaaccaaatttggtatgctgatgaacatatgaagagcttggttttgcc |
282 |
Q |
| |
|
|||||||||||||| |||||||||||| || | || | || ||||| | |||||||||||||| || |||||||||||| |||||||||||||| |
|
|
| T |
33907 |
ttattatgtataatcggagagatgatatagttcaatttcttcgacttcctaacaaccaaatttgggcggccgatgaacatatgcgtagcttggttttgcc |
33808 |
T |
|
| Q |
283 |
ccatcctcttccacattaagcttctat |
309 |
Q |
| |
|
| ||||| ||||||||||||| |||| |
|
|
| T |
33807 |
tcgtcctcatccacattaagctcctat |
33781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0128; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 72
Target Start/End: Complemental strand, 34070 - 34021
Alignment:
| Q |
23 |
gagtttggagttcaagagtcttggactcgattggtgaatgttagctatgt |
72 |
Q |
| |
|
|||| |||||||||||| ||||||||||| ||||||||||| || ||||| |
|
|
| T |
34070 |
gagtatggagttcaagaatcttggactcggttggtgaatgtcagttatgt |
34021 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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