View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6910_high_11 (Length: 239)
Name: NF6910_high_11
Description: NF6910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6910_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 29218083 - 29218306
Alignment:
| Q |
1 |
aaataatgcatctaaatggctaatacctcgaggttcttcaccctcaccatgtctctcttgcattccacatgacacaataaactaaaactaaacaacactg |
100 |
Q |
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| T |
29218083 |
aaataatgcatctaaatggctaatacctcgaggttcttcaccctcaccatgtctctcttgcattccacatgacacattaaactaaaactaaacaacactg |
29218182 |
T |
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| Q |
101 |
atttagcaaggtaaataatgattctccgaaaccttcaaaacccggacatgggggttgttttccaacacttcaaccgaaagagataacttcatactttaga |
200 |
Q |
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| T |
29218183 |
atttagcaaggtaaataatgattctccaaaaccttcaaaacccgggcatgggggttgttttccaacacttcaaccgaaagagataacttcatactttaga |
29218282 |
T |
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| Q |
201 |
aacaaagtgcaagacaaataatgt |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
29218283 |
aacaaagtgcaagacaaataatgt |
29218306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 9 - 224
Target Start/End: Original strand, 21331727 - 21331942
Alignment:
| Q |
9 |
catctaaatggctaatacctcgaggttcttcaccctcaccatgtctctcttgcattccacatgacacaataaactaaaactaaacaacactgatttagca |
108 |
Q |
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||||||||||||||||| || ||||||||||||||| ||| || ||| |||||||||| |||| |||||||||||| |||| |||||||||| ||||| |
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| T |
21331727 |
catctaaatggctaatatctagaggttcttcacccttgccaggtgtctgttgcattccagatgatacaataaactaaccctaagcaacactgatctagca |
21331826 |
T |
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| Q |
109 |
aggtaaataatgattctccgaaaccttcaaaacccggacatgggggttgttttccaacacttcaaccgaaagagataacttcatactttagaaacaaagt |
208 |
Q |
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| T |
21331827 |
aggtaaataatgattccctggaaccttcaaagcccggtcccaggggttgttttccaacactttcatcggaagaaataacttcataatttagaaacgaagt |
21331926 |
T |
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| Q |
209 |
gcaagacaaataatgt |
224 |
Q |
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| T |
21331927 |
gtaagacaaagaatgt |
21331942 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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