View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6910_high_12 (Length: 236)
Name: NF6910_high_12
Description: NF6910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6910_high_12 |
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Alignment Details
Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 17 - 221
Target Start/End: Original strand, 29218102 - 29218306
Alignment:
| Q |
17 |
ctaatacctcgaggttcttcaccctcaccatgtctctcttgcattccacatgacacaataaactaaaactaaacaacactgatttagcaaggtaaataat |
116 |
Q |
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| T |
29218102 |
ctaatacctcgaggttcttcaccctcaccatgtctctcttgcattccacatgacacattaaactaaaactaaacaacactgatttagcaaggtaaataat |
29218201 |
T |
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| Q |
117 |
gattctccgaaaccttcaaaacccggacatgggggttgttttccaacacttcaaccgaaagagataacttcatactttagaaacaaagtgcaagacaaat |
216 |
Q |
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|||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29218202 |
gattctccaaaaccttcaaaacccgggcatgggggttgttttccaacacttcaaccgaaagagataacttcatactttagaaacaaagtgcaagacaaat |
29218301 |
T |
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| Q |
217 |
aatgt |
221 |
Q |
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||||| |
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| T |
29218302 |
aatgt |
29218306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 17 - 221
Target Start/End: Original strand, 21331738 - 21331942
Alignment:
| Q |
17 |
ctaatacctcgaggttcttcaccctcaccatgtctctcttgcattccacatgacacaataaactaaaactaaacaacactgatttagcaaggtaaataat |
116 |
Q |
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|||||| || ||||||||||||||| ||| || ||| |||||||||| |||| |||||||||||| |||| |||||||||| |||||||||||||||| |
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| T |
21331738 |
ctaatatctagaggttcttcacccttgccaggtgtctgttgcattccagatgatacaataaactaaccctaagcaacactgatctagcaaggtaaataat |
21331837 |
T |
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| Q |
117 |
gattctccgaaaccttcaaaacccggacatgggggttgttttccaacacttcaaccgaaagagataacttcatactttagaaacaaagtgcaagacaaat |
216 |
Q |
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||||| | | |||||||||| ||||| | |||||||||||||||||||| | || |||| ||||||||||| ||||||||| ||||| |||||||| |
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| T |
21331838 |
gattccctggaaccttcaaagcccggtcccaggggttgttttccaacactttcatcggaagaaataacttcataatttagaaacgaagtgtaagacaaag |
21331937 |
T |
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| Q |
217 |
aatgt |
221 |
Q |
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||||| |
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| T |
21331938 |
aatgt |
21331942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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