View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6910_high_6 (Length: 390)
Name: NF6910_high_6
Description: NF6910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6910_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 238; Significance: 1e-131; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 116 - 378
Target Start/End: Original strand, 317081 - 317343
Alignment:
| Q |
116 |
gaactagtggaatatcaaaggaagattaccttgatcacttttacttttcagccctctctttaagactattccatccaaattaaaaacacaattttattga |
215 |
Q |
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| T |
317081 |
gaactagtggaatatcaaaggaagattaccttgatcacttttacttttcagccctctctttaggactattccatccaaattaaaaacacaattttattga |
317180 |
T |
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| Q |
216 |
tagttggtccctgctctgtaggacaagaaagaagaaagaataaagttgaaacnnnnnnngcttcctctggttccttcttccatgcaatctatttgatcat |
315 |
Q |
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| T |
317181 |
tagttggtccctgctctgtaggacaagaaagaagaaagaataaagttgaaacaaaaaaagcttcctctggttccttcttccatgcaatctatttgatcat |
317280 |
T |
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| Q |
316 |
tcaaactacatatggtcatgatttattaataatcatcatcttttacttcttacaatctctgct |
378 |
Q |
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| T |
317281 |
tcaaactacatatggtcatgatttattaataatcatcatcttttacttcttacaatctctgct |
317343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 316962 - 317053
Alignment:
| Q |
1 |
acattgaattgaaacaagagcactctttcccatt----caattcaaggttggttaatagtaatacaatagcactcttttccatgttattgta |
88 |
Q |
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| T |
316962 |
acattgaattgaaacaagagcactctttcccattcattcaattcaaggttggttaatagtaatacaatagcactcttttccatgttattgta |
317053 |
T |
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