View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6910_high_9 (Length: 245)

Name: NF6910_high_9
Description: NF6910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6910_high_9
NF6910_high_9
[»] chr7 (5 HSPs)
chr7 (1-201)||(6484663-6484863)
chr7 (147-201)||(2947619-2947673)
chr7 (148-199)||(37996974-37997025)
chr7 (148-201)||(33143018-33143071)
chr7 (146-200)||(1483898-1483952)
[»] chr5 (3 HSPs)
chr5 (148-201)||(41197172-41197225)
chr5 (148-200)||(35470769-35470821)
chr5 (148-197)||(22614082-22614131)
[»] chr3 (1 HSPs)
chr3 (148-201)||(50036456-50036509)
[»] chr8 (3 HSPs)
chr8 (148-200)||(2707706-2707758)
chr8 (148-200)||(35971098-35971150)
chr8 (147-200)||(37784895-37784948)
[»] chr6 (2 HSPs)
chr6 (148-200)||(26419854-26419906)
chr6 (148-199)||(14800624-14800675)
[»] chr4 (2 HSPs)
chr4 (144-200)||(56396639-56396695)
chr4 (148-201)||(6231189-6231242)
[»] chr1 (3 HSPs)
chr1 (149-201)||(16264792-16264844)
chr1 (147-201)||(49304812-49304866)
chr1 (140-197)||(26441474-26441531)
[»] chr2 (2 HSPs)
chr2 (148-201)||(23989426-23989479)
chr2 (150-197)||(25948699-25948746)
[»] scaffold0015 (1 HSPs)
scaffold0015 (148-201)||(34923-34976)


Alignment Details
Target: chr7 (Bit Score: 189; Significance: 1e-102; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 6484863 - 6484663
Alignment:
Q  1 tttttctaatcaaattcaaatgaggtatctgtttgttaatggtttttctcatgttatgataatgacataactttttcatgcaaaatttttgtatccaaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6484863 tttttctaatcaaattcaaatgaggtatctgtttgttaatggtttttctcatgttatgataatgacataactttttcatgcaaaatttttgtatccaaaa 6484764  T
Q  101 attgcgaatatttatgaacagcaaacacactttcacatgatgttattggctcaggctacggtacatgacctcaatggatctcctaacgtaggtgacttga 200  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||    
T  6484763 attgtgaatatttatgaacagcaaacacactttcacatgatgttattggctcaagctacggtacatgacctcaatggatctcctaccgtaggtgacttga 6484664  T
Q  201 c 201  Q
    |    
T  6484663 c 6484663  T

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Target: chr7; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 147 - 201
Target Start/End: Complemental strand, 2947673 - 2947619
Alignment:
Q  147 tggctcaggctacggtacatgacctcaatggatctcctaacgtaggtgacttgac 201  Q
    ||||||||||||||||||||||||||||||| ||||||| |||||||||||||||    
T  2947673 tggctcaggctacggtacatgacctcaatgggtctcctaccgtaggtgacttgac 2947619  T

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Target: chr7; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 148 - 199
Target Start/End: Original strand, 37996974 - 37997025
Alignment:
Q  148 ggctcaggctacggtacatgacctcaatggatctcctaacgtaggtgacttg 199  Q
    |||||||||||||||||||||||||||||| ||||||| |||||||||||||    
T  37996974 ggctcaggctacggtacatgacctcaatgggtctcctatcgtaggtgacttg 37997025  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 148 - 201
Target Start/End: Complemental strand, 33143071 - 33143018
Alignment:
Q  148 ggctcaggctacggtacatgacctcaatggatctcctaacgtaggtgacttgac 201  Q
    |||| |||||||||||||||||||| |||| ||| ||| |||||||||||||||    
T  33143071 ggctaaggctacggtacatgacctcgatgggtcttctaccgtaggtgacttgac 33143018  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 200
Target Start/End: Original strand, 1483898 - 1483952
Alignment:
Q  146 ttggctcaggctacggtacatgacctcaatggatctcctaacgtaggtgacttga 200  Q
    |||||||||||||||||||||| ||| ||||| ||||||| | ||||||| ||||    
T  1483898 ttggctcaggctacggtacatgtcctaaatgggtctcctatcataggtgatttga 1483952  T

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Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 148 - 201
Target Start/End: Complemental strand, 41197225 - 41197172
Alignment:
Q  148 ggctcaggctacggtacatgacctcaatggatctcctaacgtaggtgacttgac 201  Q
    |||||||||||||||||||||||||||||| ||||||| |||||||||||||||    
T  41197225 ggctcaggctacggtacatgacctcaatgggtctcctaccgtaggtgacttgac 41197172  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 148 - 200
Target Start/End: Original strand, 35470769 - 35470821
Alignment:
Q  148 ggctcaggctacggtacatgacctcaatggatctcctaacgtaggtgacttga 200  Q
    ||||||||||||||||||||| |||||| | ||||||||| ||||||||||||    
T  35470769 ggctcaggctacggtacatgatctcaataggtctcctaacataggtgacttga 35470821  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 148 - 197
Target Start/End: Complemental strand, 22614131 - 22614082
Alignment:
Q  148 ggctcaggctacggtacatgacctcaatggatctcctaacgtaggtgact 197  Q
    |||| |||||||||||   ||||||||||||||||||| |||||||||||    
T  22614131 ggcttaggctacggtaggagacctcaatggatctcctaccgtaggtgact 22614082  T

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Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 148 - 201
Target Start/End: Complemental strand, 50036509 - 50036456
Alignment:
Q  148 ggctcaggctacggtacatgacctcaatggatctcctaacgtaggtgacttgac 201  Q
    |||||||||||||||||||||||||||||| ||||||| |||||||||||||||    
T  50036509 ggctcaggctacggtacatgacctcaatgggtctcctaccgtaggtgacttgac 50036456  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 148 - 200
Target Start/End: Complemental strand, 2707758 - 2707706
Alignment:
Q  148 ggctcaggctacggtacatgacctcaatggatctcctaacgtaggtgacttga 200  Q
    |||||| ||||||||||||||||||||||| ||||||| ||||||||||||||    
T  2707758 ggctcaagctacggtacatgacctcaatgggtctcctaccgtaggtgacttga 2707706  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 200
Target Start/End: Original strand, 35971098 - 35971150
Alignment:
Q  148 ggctcaggctacggtacatgacctcaatggatctcctaacgtaggtgacttga 200  Q
    |||||||||||||||||||||||||||||| |||| || | ||| ||||||||    
T  35971098 ggctcaggctacggtacatgacctcaatgggtctcataccatagatgacttga 35971150  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 147 - 200
Target Start/End: Original strand, 37784895 - 37784948
Alignment:
Q  147 tggctcaggctacggtacatgacctcaatggatctcctaacgtaggtgacttga 200  Q
    |||||||||||||||||||||| || ||||  ||||||| | ||||||||||||    
T  37784895 tggctcaggctacggtacatgatcttaatgagtctcctaccataggtgacttga 37784948  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 148 - 200
Target Start/End: Original strand, 26419854 - 26419906
Alignment:
Q  148 ggctcaggctacggtacatgacctcaatggatctcctaacgtaggtgacttga 200  Q
    |||||||||||||||||||||||||||||| ||||||| | ||||||||||||    
T  26419854 ggctcaggctacggtacatgacctcaatgggtctcctaccataggtgacttga 26419906  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 148 - 199
Target Start/End: Complemental strand, 14800675 - 14800624
Alignment:
Q  148 ggctcaggctacggtacatgacctcaatggatctcctaacgtaggtgacttg 199  Q
    |||| |||||||||||||||| |||||||| ||||||| |||||||||||||    
T  14800675 ggcttaggctacggtacatgatctcaatgggtctcctaccgtaggtgacttg 14800624  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 144 - 200
Target Start/End: Complemental strand, 56396695 - 56396639
Alignment:
Q  144 tattggctcaggctacggtacatgacctcaatggatctcctaacgtaggtgacttga 200  Q
    |||||||| ||||||||||||||||||||||||| ||| ||| ||||||||||||||    
T  56396695 tattggctaaggctacggtacatgacctcaatgggtcttctaccgtaggtgacttga 56396639  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 148 - 201
Target Start/End: Complemental strand, 6231242 - 6231189
Alignment:
Q  148 ggctcaggctacggtacatgacctcaatggatctcctaacgtaggtgacttgac 201  Q
    |||| ||||||||||||||||||||||||| ||| ||| |||||||||| ||||    
T  6231242 ggctaaggctacggtacatgacctcaatgggtcttctaccgtaggtgacctgac 6231189  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 149 - 201
Target Start/End: Complemental strand, 16264844 - 16264792
Alignment:
Q  149 gctcaggctacggtacatgacctcaatggatctcctaacgtaggtgacttgac 201  Q
    |||||||||| |||||||||||||||||| ||||||| |||||||||||||||    
T  16264844 gctcaggctatggtacatgacctcaatgggtctcctaccgtaggtgacttgac 16264792  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 147 - 201
Target Start/End: Complemental strand, 49304866 - 49304812
Alignment:
Q  147 tggctcaggctacggtacatgacctcaatggatctcctaacgtaggtgacttgac 201  Q
    ||||||| ||||| ||||||||||||||||| ||||||| ||||| |||||||||    
T  49304866 tggctcaagctacagtacatgacctcaatgggtctcctaccgtagatgacttgac 49304812  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 197
Target Start/End: Original strand, 26441474 - 26441531
Alignment:
Q  140 atgttattggctcaggctacggtacatgacctcaatggatctcctaacgtaggtgact 197  Q
    ||||||| |||| ||||||||||||  ||||||||||| |||| || |||||||||||    
T  26441474 atgttatgggcttaggctacggtacgagacctcaatgggtctcttaccgtaggtgact 26441531  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 148 - 201
Target Start/End: Complemental strand, 23989479 - 23989426
Alignment:
Q  148 ggctcaggctacggtacatgacctcaatggatctcctaacgtaggtgacttgac 201  Q
    |||||||||||||||| ||| ||||||||| ||||||| |||||||||||||||    
T  23989479 ggctcaggctacggtaaatggcctcaatgggtctcctaccgtaggtgacttgac 23989426  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 150 - 197
Target Start/End: Complemental strand, 25948746 - 25948699
Alignment:
Q  150 ctcaggctacggtacatgacctcaatggatctcctaacgtaggtgact 197  Q
    |||||| |||||||||| |||||||||||||||||| ||||| |||||    
T  25948746 ctcaggttacggtacataacctcaatggatctcctaccgtagatgact 25948699  T

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Target: scaffold0015 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 148 - 201
Target Start/End: Original strand, 34923 - 34976
Alignment:
Q  148 ggctcaggctacggtacatgacctcaatggatctcctaacgtaggtgacttgac 201  Q
    |||||||||||| ||||||||| ||||||| ||||||| |||| ||||||||||    
T  34923 ggctcaggctaccgtacatgacttcaatgggtctcctaccgtaagtgacttgac 34976  T

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