View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6910_low_1 (Length: 652)

Name: NF6910_low_1
Description: NF6910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6910_low_1
NF6910_low_1
[»] chr3 (5 HSPs)
chr3 (361-634)||(21661814-21662087)
chr3 (302-390)||(54174629-54174718)
chr3 (274-320)||(21662107-21662153)
chr3 (290-348)||(36740862-36740920)
chr3 (302-348)||(52177647-52177693)
[»] chr5 (2 HSPs)
chr5 (290-348)||(41962076-41962134)
chr5 (290-348)||(9268374-9268432)
[»] chr4 (6 HSPs)
chr4 (290-348)||(41234836-41234894)
chr4 (295-393)||(13463901-13464000)
chr4 (291-348)||(50535234-50535291)
chr4 (292-348)||(23041357-23041413)
chr4 (302-348)||(38062850-38062896)
chr4 (295-348)||(40863442-40863495)
[»] chr7 (2 HSPs)
chr7 (360-403)||(37698138-37698181)
chr7 (302-348)||(4305080-4305126)
[»] scaffold0087 (1 HSPs)
scaffold0087 (295-348)||(26535-26588)
[»] chr2 (1 HSPs)
chr2 (295-348)||(21996904-21996957)
[»] chr1 (1 HSPs)
chr1 (294-398)||(17644241-17644346)


Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-119; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 361 - 634
Target Start/End: Complemental strand, 21662087 - 21661814
Alignment:
Q  361 ttgtatggtacacaaaaagtttcacttgtgtatgctaaccttcccgggttttgcaatattaagatgattcaccgtaattttgtcaaatttattgcgatat 460  Q
    |||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  21662087 ttgtatagtacacaaaaagtttcacttgtgtatgctaaccttccccggttttgcaatattaagatgatttaccgtaattttgtcaaatttattgcgatat 21661988  T
Q  461 tattttgccccggacttagtgtgtgtctatatatatgaccannnnnnnncaattaaagtaaaagtttgaacagttatcatgacaaaggagttcaaccaac 560  Q
    |||||||||||||||||||||||||||||||||||||||          ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  21661987 tattttgccccggacttagtgtgtgtctatatatatgacatttttttttcaattaaagaaaaagtttgaacagttatcatgacaaaggagttcaaccaac 21661888  T
Q  561 aagcagagatatgtgtggagttagaaaccttatggcaagctttgtccaaagatttgatagtaacaataccaaag 634  Q
    ||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||    
T  21661887 aagcagagatatgtgtggagttagaaaccttgtggcaagctctgtccaaagatttgatagtaacaataccaaag 21661814  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 302 - 390
Target Start/End: Original strand, 54174629 - 54174718
Alignment:
Q  302 cattcttcaatcatagccattaaattatttaataatatatcaatggtnnnnnnncac--atttgtatggtacacaaaaagtttcacttgtg 390  Q
    |||||||||||| |||||||| ||||||||||||||||||||||| |       |||   |||||||||||||||||||||||||||||||    
T  54174629 cattcttcaatcttagccattgaattatttaataatatatcaatgat-aaaaaacacctttttgtatggtacacaaaaagtttcacttgtg 54174718  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 274 - 320
Target Start/End: Complemental strand, 21662153 - 21662107
Alignment:
Q  274 ctaaacctgcatatggtaaaaaagtactcattcttcaatcatagcca 320  Q
    |||||||||||| ||||||| ||||||||||| ||||||||||||||    
T  21662153 ctaaacctgcatgtggtaaacaagtactcatttttcaatcatagcca 21662107  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 290 - 348
Target Start/End: Original strand, 36740862 - 36740920
Alignment:
Q  290 taaaaaagtactcattcttcaatcatagccattaaattatttaataatatatcaatggt 348  Q
    |||| ||||| ||||||||||||  | |||||| |||||||||||||||||||||||||    
T  36740862 taaacaagtaatcattcttcaattttggccattcaattatttaataatatatcaatggt 36740920  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 302 - 348
Target Start/End: Original strand, 52177647 - 52177693
Alignment:
Q  302 cattcttcaatcatagccattaaattatttaataatatatcaatggt 348  Q
    |||||||||||| | |||||| |||| ||||||||||||||||||||    
T  52177647 cattcttcaatcttggccattgaattgtttaataatatatcaatggt 52177693  T

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Target: chr5 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 290 - 348
Target Start/End: Original strand, 41962076 - 41962134
Alignment:
Q  290 taaaaaagtactcattcttcaatcatagccattaaattatttaataatatatcaatggt 348  Q
    |||| |||||||||||||| |||| |||||||| |||| ||||||||||||||||||||    
T  41962076 taaacaagtactcattctttaatcttagccattgaattttttaataatatatcaatggt 41962134  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 290 - 348
Target Start/End: Complemental strand, 9268432 - 9268374
Alignment:
Q  290 taaaaaagtactcattcttcaatcatagccattaaattatttaataatatatcaatggt 348  Q
    |||| ||||||||||||||||||| | |||||| |||| ||||||| ||||||||||||    
T  9268432 taaacaagtactcattcttcaatcttggccattgaattgtttaatattatatcaatggt 9268374  T

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Target: chr4 (Bit Score: 39; Significance: 0.000000000001; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 290 - 348
Target Start/End: Original strand, 41234836 - 41234894
Alignment:
Q  290 taaaaaagtactcattcttcaatcatagccattaaattatttaataatatatcaatggt 348  Q
    |||| |||||||||||||| |||| |||||||| |||| ||||||||||||||||||||    
T  41234836 taaacaagtactcattctttaatcttagccattgaattttttaataatatatcaatggt 41234894  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 295 - 393
Target Start/End: Original strand, 13463901 - 13464000
Alignment:
Q  295 aagtactcattcttcaatcatagccattaaattatttaataatatatcaatggtnnnnnnncaca--tttgtatggtacacaaaaagtttcacttgtgta 392  Q
    |||||| |||||||||||| | |||||| |||| ||||||| ||||||||||||       ||||  |||||||| ||||||||||||||||||||||||    
T  13463901 aagtacccattcttcaatcttggccattgaattgtttaatattatatcaatggt-gaaaaacacatttttgtatgatacacaaaaagtttcacttgtgta 13463999  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 291 - 348
Target Start/End: Complemental strand, 50535291 - 50535234
Alignment:
Q  291 aaaaaagtactcattcttcaatcatagccattaaattatttaataatatatcaatggt 348  Q
    |||||||||| |||||||||||| | |||||| |||| ||||||| ||||||||||||    
T  50535291 aaaaaagtacccattcttcaatcttggccattcaattgtttaatattatatcaatggt 50535234  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 292 - 348
Target Start/End: Original strand, 23041357 - 23041413
Alignment:
Q  292 aaaaagtactcattcttcaatcatagccattaaattatttaataatatatcaatggt 348  Q
    |||| |||| |||||||||||||| ||||| ||||  ||||||||||||||||||||    
T  23041357 aaaaggtacccattcttcaatcattgccataaaatattttaataatatatcaatggt 23041413  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 302 - 348
Target Start/End: Complemental strand, 38062896 - 38062850
Alignment:
Q  302 cattcttcaatcatagccattaaattatttaataatatatcaatggt 348  Q
    |||||||||||| | |||||| |||||||||||||||||| ||||||    
T  38062896 cattcttcaatcttggccattcaattatttaataatatattaatggt 38062850  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 295 - 348
Target Start/End: Original strand, 40863442 - 40863495
Alignment:
Q  295 aagtactcattcttcaatcatagccattaaattatttaataatatatcaatggt 348  Q
    |||||| |||||||||||| |  ||||| |||||||||||| ||||||||||||    
T  40863442 aagtacccattcttcaatcttgaccattgaattatttaatattatatcaatggt 40863495  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 360 - 403
Target Start/End: Complemental strand, 37698181 - 37698138
Alignment:
Q  360 tttgtatggtacacaaaaagtttcacttgtgtatgctaaccttc 403  Q
    |||||||| ||||||||||| |||||||||||||||||||||||    
T  37698181 tttgtatgatacacaaaaagcttcacttgtgtatgctaaccttc 37698138  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 302 - 348
Target Start/End: Original strand, 4305080 - 4305126
Alignment:
Q  302 cattcttcaatcatagccattaaattatttaataatatatcaatggt 348  Q
    |||||||||||| | |||||| |||||||||||||||||| ||||||    
T  4305080 cattcttcaatcttggccattcaattatttaataatatattaatggt 4305126  T

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Target: scaffold0087 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0087
Description:

Target: scaffold0087; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 295 - 348
Target Start/End: Original strand, 26535 - 26588
Alignment:
Q  295 aagtactcattcttcaatcatagccattaaattatttaataatatatcaatggt 348  Q
    ||||||||||||||||||| |  ||||| |||||||||||||||| ||||||||    
T  26535 aagtactcattcttcaatcttgaccattgaattatttaataatatctcaatggt 26588  T

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Target: chr2 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 295 - 348
Target Start/End: Complemental strand, 21996957 - 21996904
Alignment:
Q  295 aagtactcattcttcaatcatagccattaaattatttaataatatatcaatggt 348  Q
    |||||| |||||||||||| | ||||||||||||||||||| ||||| ||||||    
T  21996957 aagtacccattcttcaatcttggccattaaattatttaatattatattaatggt 21996904  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 294 - 398
Target Start/End: Original strand, 17644241 - 17644346
Alignment:
Q  294 aaagtactcattcttcaatcatagccattaaattatttaataatatatcaatggtnnnnnnncaca--tttgtatggtacacaaaaagtttcacttgtgt 391  Q
    ||||||| |||||||||||| | |||||| |||| ||||||| |||||||||| |       ||||  |||||||| |||||||||||||| ||||||||    
T  17644241 aaagtacccattcttcaatcttggccattgaattgtttaatattatatcaatgat-gaaaagcacatttttgtatgatacacaaaaagtttgacttgtgt 17644339  T
Q  392 atgctaa 398  Q
    || ||||    
T  17644340 attctaa 17644346  T

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