View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6910_low_10 (Length: 272)
Name: NF6910_low_10
Description: NF6910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6910_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 5 - 254
Target Start/End: Original strand, 49024069 - 49024318
Alignment:
| Q |
5 |
ctttggtgtttttgatgggcatggtcaatttggtagtcaatgttcaaactttgttagagataggttggtagagaagttatctaatgaccctggattggtg |
104 |
Q |
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| T |
49024069 |
ctttggtgtttttgatgggcatggtcaatttggtagtcaatgttcaaactttgttagagataggttggtagagaagttatctaatgaccctggattggtg |
49024168 |
T |
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| Q |
105 |
gaggatcctgttcgagcttacaattctgcgttctcggcaacaaatcatgaattgcatactagtgacattgatgatactatgagtggtacaacggctatta |
204 |
Q |
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| T |
49024169 |
gaggatcctgttcgagcttacaattctgcgttctcggcaacaaatcatgaattgcatactagtgacattgatgatactatgagtggtacaacggctatta |
49024268 |
T |
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| Q |
205 |
cagtgcttgttattggtgacaccctttatgttgctaatgttggtgattca |
254 |
Q |
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| T |
49024269 |
cagtgcttgttattggtgacaccctttatgttgctaatgttggtgattca |
49024318 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 5 - 253
Target Start/End: Complemental strand, 7067427 - 7067179
Alignment:
| Q |
5 |
ctttggtgtttttgatgggcatggtcaatttggtagtcaatgttcaaactttgttagagataggttggtagagaagttatctaatgaccctggattggtg |
104 |
Q |
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| T |
7067427 |
ctttggtgtttatgatggacatggtgaatttggtggactgtgttctaattttgttaagaataagttggttgagaaattgtctaatgattctgcattgtta |
7067328 |
T |
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| Q |
105 |
gaggatcctgttcgagcttacaattctgcgttctcggcaacaaatcatgaattgcatactagtgacattgatgatactatgagtggtacaacggctatta |
204 |
Q |
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| T |
7067327 |
gaggatcctgttaaggcttataattcggcttttttggctacgaatgatgagttgcataaaagtgagattgatgattgtatgagtggtactactgcgatta |
7067228 |
T |
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| Q |
205 |
cagtgcttgttattggtgacaccctttatgttgctaatgttggtgattc |
253 |
Q |
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| T |
7067227 |
cggtgcttgtgataggggatacactttatgttgcgaatgttggtgattc |
7067179 |
T |
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