View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6910_low_3 (Length: 607)

Name: NF6910_low_3
Description: NF6910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6910_low_3
NF6910_low_3
[»] chr5 (3 HSPs)
chr5 (17-367)||(6419637-6420003)
chr5 (415-601)||(6419393-6419586)
chr5 (416-456)||(43007762-43007802)
[»] chr2 (2 HSPs)
chr2 (416-509)||(24026708-24026801)
chr2 (416-456)||(14902316-14902356)
[»] chr7 (5 HSPs)
chr7 (416-506)||(20246659-20246749)
chr7 (411-508)||(6391654-6391749)
chr7 (416-457)||(26772622-26772663)
chr7 (416-509)||(37808026-37808119)
chr7 (416-456)||(30275327-30275367)
[»] chr4 (5 HSPs)
chr4 (416-510)||(41668850-41668944)
chr4 (416-457)||(7372650-7372691)
chr4 (417-458)||(21124579-21124620)
chr4 (417-458)||(21144669-21144710)
chr4 (424-456)||(53423277-53423309)
[»] chr3 (4 HSPs)
chr3 (417-506)||(1543202-1543291)
chr3 (416-456)||(43790658-43790698)
chr3 (416-478)||(24481334-24481396)
chr3 (416-456)||(9107110-9107150)
[»] chr8 (3 HSPs)
chr8 (416-452)||(2296681-2296717)
chr8 (416-456)||(9315445-9315485)
chr8 (420-456)||(32236988-32237024)
[»] chr1 (2 HSPs)
chr1 (422-502)||(5450636-5450716)
chr1 (416-456)||(6587114-6587154)


Alignment Details
Target: chr5 (Bit Score: 274; Significance: 1e-153; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 17 - 367
Target Start/End: Complemental strand, 6420003 - 6419637
Alignment:
Q  17 ttaagaagaagggtcaaaatactattttcattcaagtttgaagagtnnnnnnnnn-gtggcacagtgacagagtcacagttacagagaggagcggcaatg 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||          ||||||||||||||||||||||||||||||||||||||||||||    
T  6420003 ttaagaagaagggtcaaaatactattttcattcaagtttgaagagtaaaaaaaaaagtggcacagtgacagagtcacagttacagagaggagcggcaatg 6419904  T
Q  116 gcatgcatgcagagagcacagctatgctaattgacccaactttgctttgactccattactattact---------------attattattattaacaaac 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||               |||||||||||||||||||    
T  6419903 gcatgcatgcagagagcacagctatgctaattgacccaactttgctttgactccattactattacttttattattattattattattattattaacaaac 6419804  T
Q  201 aaagcaatgggaatgagctggcgacattgattgatcaaagttagtactagactagcagtcaccacgtgatccagggttcaattttaacttaattctaatg 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  6419803 aaagcaatgggaatgagctggcgacattgattgatcaaagttagtactagactagcagtcaccacgtgatccagggtttaattttaacttaattctaatg 6419704  T
Q  301 tgattttgaatccaaattttacaataaactagcattatacccgtgcttttgcaatggtcatgcaata 367  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  6419703 tgattttgaatccaaattttacaataaactagcataatacccgtgcttttgcaatggtcatgcaata 6419637  T

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Target: chr5; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 415 - 601
Target Start/End: Complemental strand, 6419586 - 6419393
Alignment:
Q  415 atttttatatcaaatttgatgtttatatatatttattagttaaagcctaatttataggttcgctttagactatcaaaatctcaaaaacggccctgagta- 513  Q
    ||||||||||||| |||||||||||||||||||||||||||||||| |||||| |||||||  ||||  | | |||||||| ||||||     |   ||     
T  6419586 atttttatatcaagtttgatgtttatatatatttattagttaaagcttaatttgtaggttcattttaagccaccaaaatcttaaaaactattatatttag 6419487  T
Q  514 ------cgatgcaggatccgttcctaaatacatatcggctattgcatgtgaattattcacgtgacataattaggaaacagtgaagtattattta 601  Q
          || ||||||| | |||  |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6419486 ttgcggcgttgcaggacctgtttttaaatacatatccgctattgcatgtgaattattcacgtgacataattaggaaacagtgaagtattattta 6419393  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 416 - 456
Target Start/End: Original strand, 43007762 - 43007802
Alignment:
Q  416 tttttatatcaaatttgatgtttatatatatttattagtta 456  Q
    ||||| ||||||| |||||||||||||||| ||||||||||    
T  43007762 tttttgtatcaaacttgatgtttatatataattattagtta 43007802  T

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Target: chr2 (Bit Score: 50; Significance: 3e-19; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 416 - 509
Target Start/End: Original strand, 24026708 - 24026801
Alignment:
Q  416 tttttatatcaaatttgatgtttatatatatttattagttaaagcctaatttataggttcgctttagactatcaaaatctcaaaaacggccctg 509  Q
    |||||||||||||||| |||||||||||||||||||||||||   |||| || |||||||||  ||||| | ||||||||||||| ||||||||    
T  24026708 tttttatatcaaatttaatgtttatatatatttattagttaagatctaaattgtaggttcgccctagaccaccaaaatctcaaaatcggccctg 24026801  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 416 - 456
Target Start/End: Complemental strand, 14902356 - 14902316
Alignment:
Q  416 tttttatatcaaatttgatgtttatatatatttattagtta 456  Q
    ||||| |||||||||||||||||||||||||||||||||||    
T  14902356 tttttgtatcaaatttgatgtttatatatatttattagtta 14902316  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 416 - 506
Target Start/End: Complemental strand, 20246749 - 20246659
Alignment:
Q  416 tttttatatcaaatttgatgtttatatatatttattagttaaagcctaatttataggttcgctttagactatcaaaatctcaaaaacggcc 506  Q
    ||||||||||||||||||||||||||||| |||||||||||   ||||| |||||||||| |  ||| | | |||||||||| ||||||||    
T  20246749 tttttatatcaaatttgatgtttatatatgtttattagttatgacctaaattataggttcaccataggccaccaaaatctcataaacggcc 20246659  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 411 - 508
Target Start/End: Original strand, 6391654 - 6391749
Alignment:
Q  411 ttaaatttttatatcaaatttgatgtttatatatatttattagttaaagcctaatttataggttcgctttagactatcaaaatctcaaaaacggccct 508  Q
    |||| ||||||||| ||||||||||||||||  ||||||||||||| |  | || ||||||||| ||||||  | |||||||| ||||||||||||||    
T  6391654 ttaattttttatattaaatttgatgtttata--tatttattagttataatcaaaattataggtttgctttatgccatcaaaatttcaaaaacggccct 6391749  T

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Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 416 - 457
Target Start/End: Complemental strand, 26772663 - 26772622
Alignment:
Q  416 tttttatatcaaatttgatgtttatatatatttattagttaa 457  Q
    ||||||||| ||||||||||||||||||||||||||||||||    
T  26772663 tttttatataaaatttgatgtttatatatatttattagttaa 26772622  T

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Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 416 - 509
Target Start/End: Complemental strand, 37808119 - 37808026
Alignment:
Q  416 tttttatatcaaatttgatgtttatatatatttattagttaaagcctaatttataggttcgctttagactatcaaaatctcaaaaacggccctg 509  Q
    ||||||||| || ||| ||||||||||||||||||||||||   ||||| ||||||| ||||  || || | |||||||||| |||||||||||    
T  37808119 tttttatatgaagttttatgtttatatatatttattagttaggacctaaattataggctcgccctaaaccaccaaaatctcataaacggccctg 37808026  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 416 - 456
Target Start/End: Complemental strand, 30275367 - 30275327
Alignment:
Q  416 tttttatatcaaatttgatgtttatatatatttattagtta 456  Q
    ||||| |||||| ||||||||||||||||||||||||||||    
T  30275367 tttttgtatcaagtttgatgtttatatatatttattagtta 30275327  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 416 - 510
Target Start/End: Complemental strand, 41668944 - 41668850
Alignment:
Q  416 tttttatatcaaatttgatgtttatatatatttattagttaaagcctaatttataggttcgctttagactatcaaaatctcaaaaacggccctga 510  Q
    ||||| |||||| ||||||||||||||||||||||||||||   || || ||||||||||||  ||| | | |||||||||| ||| ||||||||    
T  41668944 tttttgtatcaagtttgatgtttatatatatttattagttaggacccaaattataggttcgccctaggccaccaaaatctcagaaaaggccctga 41668850  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 416 - 457
Target Start/End: Original strand, 7372650 - 7372691
Alignment:
Q  416 tttttatatcaaatttgatgtttatatatatttattagttaa 457  Q
    ||||| ||||||||||||||||||||||||||||||||||||    
T  7372650 tttttgtatcaaatttgatgtttatatatatttattagttaa 7372691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 417 - 458
Target Start/End: Original strand, 21124579 - 21124620
Alignment:
Q  417 ttttatatcaaatttgatgtttatatatatttattagttaaa 458  Q
    ||||||||||| ||||||||||||||||||||||||||||||    
T  21124579 ttttatatcaagtttgatgtttatatatatttattagttaaa 21124620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 417 - 458
Target Start/End: Original strand, 21144669 - 21144710
Alignment:
Q  417 ttttatatcaaatttgatgtttatatatatttattagttaaa 458  Q
    ||||||||||| ||||||||||||||||||||||||||||||    
T  21144669 ttttatatcaagtttgatgtttatatatatttattagttaaa 21144710  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 424 - 456
Target Start/End: Original strand, 53423277 - 53423309
Alignment:
Q  424 tcaaatttgatgtttatatatatttattagtta 456  Q
    |||||||||||||||||||||||||||||||||    
T  53423277 tcaaatttgatgtttatatatatttattagtta 53423309  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000004; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 417 - 506
Target Start/End: Complemental strand, 1543291 - 1543202
Alignment:
Q  417 ttttatatcaaatttgatgtttatatatatttattagttaaagcctaatttataggttcgctttagactatcaaaatctcaaaaacggcc 506  Q
    |||| |||||||||| |||||| |||||||||||||||||      || || |||||||||||||||| |||||||||||| ||||||||    
T  1543291 ttttttatcaaatttaatgtttttatatatttattagttaggattcaaattgtaggttcgctttagaccatcaaaatctcataaacggcc 1543202  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 416 - 456
Target Start/End: Original strand, 43790658 - 43790698
Alignment:
Q  416 tttttatatcaaatttgatgtttatatatatttattagtta 456  Q
    ||||| |||||||||||||||||||||||||||||||||||    
T  43790658 tttttgtatcaaatttgatgtttatatatatttattagtta 43790698  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 416 - 478
Target Start/End: Complemental strand, 24481396 - 24481334
Alignment:
Q  416 tttttatatcaaatttgatgtttatatatatttattagttaaagcctaatttataggttcgct 478  Q
    ||||| |||||| ||||||||||||||||||||| |||||| || |||| || ||||||||||    
T  24481396 tttttttatcaagtttgatgtttatatatatttactagttagagtctaaattgtaggttcgct 24481334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 416 - 456
Target Start/End: Complemental strand, 9107150 - 9107110
Alignment:
Q  416 tttttatatcaaatttgatgtttatatatatttattagtta 456  Q
    ||||| |||| ||||||||||||||||||||||||||||||    
T  9107150 tttttgtatcgaatttgatgtttatatatatttattagtta 9107110  T

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Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 416 - 452
Target Start/End: Original strand, 2296681 - 2296717
Alignment:
Q  416 tttttatatcaaatttgatgtttatatatatttatta 452  Q
    |||||||||||||||||||||||||||||||||||||    
T  2296681 tttttatatcaaatttgatgtttatatatatttatta 2296717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 416 - 456
Target Start/End: Complemental strand, 9315485 - 9315445
Alignment:
Q  416 tttttatatcaaatttgatgtttatatatatttattagtta 456  Q
    ||||| |||||||||| ||||||||||||||||||||||||    
T  9315485 tttttgtatcaaatttaatgtttatatatatttattagtta 9315445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 420 - 456
Target Start/End: Original strand, 32236988 - 32237024
Alignment:
Q  420 tatatcaaatttgatgtttatatatatttattagtta 456  Q
    |||||||| ||||||||||||||||||||||||||||    
T  32236988 tatatcaagtttgatgtttatatatatttattagtta 32237024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 422 - 502
Target Start/End: Complemental strand, 5450716 - 5450636
Alignment:
Q  422 tatcaaatttgatgtttatatatatttattagttaaagcctaatttataggttcgctttagactatcaaaatctcaaaaac 502  Q
    |||||| ||||||||||||||||||||||||||||    | || |||||| |||||  ||||| |||||||||||| ||||    
T  5450716 tatcaagtttgatgtttatatatatttattagttatgatccaaattatagattcgcgatagaccatcaaaatctcataaac 5450636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 416 - 456
Target Start/End: Original strand, 6587114 - 6587154
Alignment:
Q  416 tttttatatcaaatttgatgtttatatatatttattagtta 456  Q
    ||||| |||||| ||||||||||||||| ||||||||||||    
T  6587114 tttttttatcaagtttgatgtttatatagatttattagtta 6587154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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