View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6910_low_5 (Length: 412)
Name: NF6910_low_5
Description: NF6910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6910_low_5 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 268; Significance: 1e-149; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 129 - 412
Target Start/End: Original strand, 49023800 - 49024083
Alignment:
| Q |
129 |
cctgtttgaaacatgggttgtgttcatggtaaatgttgctgtctgaaatcttcggatggcgtctctagaaaacttggttatcatcatagccataggaaga |
228 |
Q |
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| T |
49023800 |
cctgtttgaaacatgggttgtgttcatggtaaatgttgctgtctgaaatcttcgggtggcgtctctagaaaacttggttatcatcatagccataggaaga |
49023899 |
T |
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| Q |
229 |
acatacaagctcagagagtgttgaaaaatgtttctgttccttcccacaactttgttttggagtatacctttctcacgctgcgaggttactaccctgactc |
328 |
Q |
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| T |
49023900 |
acatacaagctcagagagtgttgaaaaatgtttctgttccttcacacaactttgttttggagtatacctttctcacgctgcgaggttactaccctgactc |
49023999 |
T |
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| Q |
329 |
tctggataaacaaaaccaagatagtttctgcattaggacggaaattcaaggtaacccaaacatccatttctttggtgtttttga |
412 |
Q |
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| T |
49024000 |
gctggataaacaaaaccaagatagtttctgcattaggacggaaattcaaggtaacccaaatatccatttctttggtgtttttga |
49024083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 336 - 411
Target Start/End: Complemental strand, 49903403 - 49903328
Alignment:
| Q |
336 |
aaacaaaaccaagatagtttctgcattaggacggaaattcaaggtaacccaaacatccatttctttggtgtttttg |
411 |
Q |
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| T |
49903403 |
aaacaaaaacatgatagttcttgcaataggacggaaattcaaggtaacccgaatatccatttatttggtgtttttg |
49903328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 49023688 - 49023759
Alignment:
| Q |
1 |
gaggagttacaacttcctgtaaacttttgnnnnnnnnnncaatgctttcggtttcatgtcttgtttacaacaa |
73 |
Q |
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| T |
49023688 |
gaggagttacaacttcctgtaaactttt-ttttttctttcaatgctttcggtttcatgtcttgtttataacaa |
49023759 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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