View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6911_high_1 (Length: 526)
Name: NF6911_high_1
Description: NF6911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6911_high_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 75 - 512
Target Start/End: Original strand, 489924 - 490359
Alignment:
| Q |
75 |
taaggtggtggcaatagatcttgatctagtaatttatatcaaagtatgtctggtacattgaaactcacatcaaag-----tggtacattaaaaacaaatt |
169 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
489924 |
taaggtggtggcaatagatcttgatcta---atttatatcaaagtatg----gtacattgaaactcacatcaaagtaaagtggtacattaaaaacaaatt |
490016 |
T |
|
| Q |
170 |
tatctcatgaaagggaaaatcaatttcctctttaacaattgagaattattattattggaaacaaatagcacaatatataacatcatttttcttcttaagt |
269 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
490017 |
tatctcatgaaagggaaaatcaatttactctttaacaattgagaattattatttttggaaacaaatagcacaatatataacatgatttttcttcttaagt |
490116 |
T |
|
| Q |
270 |
tttaacatgaagcctacaaacccttgcatccttatagattctgcctggtctgcagaagtagttcttttttggtgaacaatgactatcttgtgagcatata |
369 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
490117 |
tttaacatgaagcctacaaacccttgcatccttatagattctgcctggtctgcagaagtagttcttttttggtgaacaatgactatcttttgagcatata |
490216 |
T |
|
| Q |
370 |
cacaacccttccaatgcacatccatcttttaatattgtcaccccttctttaagtccaagcacttggtctgtccaatcactagagaaaagtctcttcgggt |
469 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
490217 |
cacaacccttccaatgcacatccatcttttaatattgtcaccccttctttaagtccaagcacttggtctgtccaatcactagagaaaagtctcttcgggt |
490316 |
T |
|
| Q |
470 |
catatttctttttaaccttcaaaaacctatttgccttattata |
512 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
490317 |
catatttctttttaaccttcaaaaacctatttgccttattata |
490359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 136; Significance: 1e-70; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 255 - 458
Target Start/End: Complemental strand, 49016652 - 49016449
Alignment:
| Q |
255 |
tttttcttcttaagttttaacatgaagcctacaaacccttgcatccttatagattctgcctggtctgcagaagtagttcttttttggtgaacaatgacta |
354 |
Q |
| |
|
|||||||||||| || |||||| | ||||||||||||||||||||||||| || ||||||||||| |||||||| | ||||| |||| ||| ||| || |
|
|
| T |
49016652 |
tttttcttcttaggtgttaacaccacgcctacaaacccttgcatccttataaatcctgcctggtctacagaagtaactgtttttcggtgcacagtgagta |
49016553 |
T |
|
| Q |
355 |
tcttgtgagcatatacacaacccttccaatgcacatccatcttttaatattgtcaccccttctttaagtccaagcacttggtctgtccaatcactagaga |
454 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| |
|
|
| T |
49016552 |
tcttgtgagcatatacacaacccttccaatgcacatccatcttttaatattgtcaccccttctttaagtccaagcacttggtttgtccactcactagaga |
49016453 |
T |
|
| Q |
455 |
aaag |
458 |
Q |
| |
|
|||| |
|
|
| T |
49016452 |
aaag |
49016449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 346 - 494
Target Start/End: Complemental strand, 9072264 - 9072116
Alignment:
| Q |
346 |
caatgactatcttgtgagcatatacacaacccttccaatgcacatccatcttttaatattgtcaccccttctttaagtccaagcacttggtctgtccaat |
445 |
Q |
| |
|
||||| ||||||||||| || |||||||| ||||| |||||||| |||| ||| ||||||||||| |||||||| | |||||||||||| || ||||| |
|
|
| T |
9072264 |
caatggctatcttgtgaacaaatacacaaaccttctaatgcacacccatttttcaatattgtcacaccttcttttattccaagcacttgatccgtccatg |
9072165 |
T |
|
| Q |
446 |
cactagagaaaagtctcttcgggtcatatttctttttaaccttcaaaaa |
494 |
Q |
| |
|
|||||||||||||| | | |||||||||| ||||||||||||||| |
|
|
| T |
9072164 |
tactagagaaaagtccttgtgaatcatatttctctttaaccttcaaaaa |
9072116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University