View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6911_high_4 (Length: 461)
Name: NF6911_high_4
Description: NF6911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6911_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 390; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 10 - 451
Target Start/End: Original strand, 24326472 - 24326922
Alignment:
| Q |
10 |
acatcaaagttaaagcaaacaatgttttaccatgtaaaaac----atc-----gtaaaaaagcacgatttgacatcatattttggttgttgatttgcaga |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||| | | ||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
24326472 |
acatcaaagttaaagcaaacaatgttttaccatgtaaaaactattagctgcaagtaaagaagcacgatttgacatcatattttggttgttgatttgcaga |
24326571 |
T |
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| Q |
101 |
tggaatgtatatgatggaagttgatagagttctaaggcctggtggttattgggtgctttctggtcctccaatcaattggaaggtcaactacaaaccatgg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24326572 |
tggaatgtatatgatggaagttgatagagttctaaggcctggtggttattgggtgctttctggtcctccaatcaattggaaggtcaactacaaaccatgg |
24326671 |
T |
|
| Q |
201 |
cagagaccaaaggaggaacttgaggaagaacaaagaaagattgaagaggttgccaagaaactttgctgggagaagaagtctgagaaggctgaaattgcaa |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24326672 |
cagagaccaaaggaggaacttgaggaagaacaaagaaagattgaagaggttgctaagaaactttgctgggagaagaagtctgagaaggctgaaattgcaa |
24326771 |
T |
|
| Q |
301 |
tttggcaaaagatgacagacactgaatcatgtcgtagcagacaagacgactccagtgtagaattttgcgaatcctcagatcctgatgatgtctggtatgc |
400 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
24326772 |
tttggcaaaagatgacagacaccgaatcatgtcgtagcagacaagacgactccagtgtagaattttgcgaatcctcagatcccgatgatgtctggtatgc |
24326871 |
T |
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| Q |
401 |
atgcttagccccctttttgctgttatataattaatatttgtttattgatgt |
451 |
Q |
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| T |
24326872 |
atgcttagccccctttttgctgttatataattaatatttatttattgatgt |
24326922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 97 - 163
Target Start/End: Original strand, 42399327 - 42399393
Alignment:
| Q |
97 |
cagatggaatgtatatgatggaagttgatagagttctaaggcctggtggttattgggtgctttctgg |
163 |
Q |
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||||||| |||||| |||| ||||| |||||||| || ||||| |||||||||||| | |||||||| |
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| T |
42399327 |
cagatggtatgtatttgattgaagtggatagagtccttaggccaggtggttattggattctttctgg |
42399393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 99; Significance: 1e-48; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 96 - 298
Target Start/End: Complemental strand, 17754818 - 17754616
Alignment:
| Q |
96 |
gcagatggaatgtatatgatggaagttgatagagttctaaggcctggtggttattgggtgctttctggtcctccaatcaattggaaggtcaactacaaac |
195 |
Q |
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|||||||| || ||| ||||||||||||| |||||||||| ||||| ||||||||||||||||| || ||||||||| ||||||||| || |||||| |
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| T |
17754818 |
gcagatgggatttatttgatggaagttgaccgagttctaagacctggcggttattgggtgctttcgggacctccaatccattggaaggctaattacaaag |
17754719 |
T |
|
| Q |
196 |
catggcagagaccaaaggaggaacttgaggaagaacaaagaaagattgaagaggttgccaagaaactttgctgggagaagaagtctgagaaggctgaaat |
295 |
Q |
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| T |
17754718 |
cctggcaaagacctaaggaggatcttgaggaagaacaaagaaagattgaagatgttgctaagctcctttgctgggagaagaagtccgagaagaatgaaat |
17754619 |
T |
|
| Q |
296 |
tgc |
298 |
Q |
| |
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||| |
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| T |
17754618 |
tgc |
17754616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 101 - 182
Target Start/End: Original strand, 14186919 - 14187000
Alignment:
| Q |
101 |
tggaatgtatatgatggaagttgatagagttctaaggcctggtggttattgggtgctttctggtcctccaatcaattggaag |
182 |
Q |
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|||| |||| |||| ||||||||| ||||||| || ||||||||||||||| | |||||||||||||||||||| |||||| |
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| T |
14186919 |
tggattgtacatgaaggaagttgaccgagttcttagacctggtggttattggatactttctggtcctccaatcaactggaag |
14187000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 95 - 181
Target Start/End: Complemental strand, 40829053 - 40828967
Alignment:
| Q |
95 |
tgcagatggaatgtatatgatggaagttgatagagttctaaggcctggtggttattgggtgctttctggtcctccaatcaattggaa |
181 |
Q |
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|||||| || |||||| | |||||||||||| ||||| ||||||||||||| | |||| | | ||||| |||||||| |||||||| |
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| T |
40829053 |
tgcagagggcatgtatctaatggaagttgatcgagttttaaggcctggtggattttggattttatctggccctccaattaattggaa |
40828967 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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