View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6911_high_5 (Length: 441)
Name: NF6911_high_5
Description: NF6911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6911_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 16 - 429
Target Start/End: Original strand, 334613 - 335024
Alignment:
| Q |
16 |
acatcagattttacggatagttcaaataaactttgcatgatacaatatagaacttcaaaacagacctctaattttgaaaagaaaagagaggacatggttn |
115 |
Q |
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| T |
334613 |
acatcagattttacggatagttcaaataaactttgcatgatacaatatagaacttcaaaacagacctctaattttgaaaagaaaagagaggacatggtta |
334712 |
T |
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| Q |
116 |
nnnnnnnnnnnnnnnnctttaggaataatacacaaggagtattaaactgaaatcaatcctttaaatgatagtgtaataatgactgctatgtgataattgt |
215 |
Q |
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| T |
334713 |
aaaaaaaaaaaaaaaa--ttaggaataatacacaaggagtattaaactgaaatcaatcctttaaatgatagtgtaataatgactgctatgtgataattgt |
334810 |
T |
|
| Q |
216 |
gaagttcaccaaacaaatcaatgtacatagatggacaagccccattccttcagaggaatacagaagagggtcaatgtcttaaaaaggttccattttgggt |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
334811 |
gaagttcaccaaacaaatcaatgtacatagatggacaagccccattccttcagaggaatacagaagagggtcaatgtgttaaaaaggttccattttgggt |
334910 |
T |
|
| Q |
316 |
aaaactactgattacttggaattttatctttataaattgttattggttacaacattggagaaagaatccacctgacaaccagacgccctgaaggaactaa |
415 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
334911 |
aaaactactgattgcttggaattttatctttataaattgttattggttacaacattggagaaagaatccacctgacaaccagacgccctgaaggaactaa |
335010 |
T |
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| Q |
416 |
aatcatgatgtcca |
429 |
Q |
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|||||||||||||| |
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| T |
335011 |
aatcatgatgtcca |
335024 |
T |
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