View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6911_high_6 (Length: 378)
Name: NF6911_high_6
Description: NF6911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6911_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 20 - 369
Target Start/End: Original strand, 26940634 - 26940983
Alignment:
| Q |
20 |
actaatacctcaaatttgataggattgtacaagacggcaaaactcacttttcaagagttttaacattactacctccttaaggccacatttaaattaagaa |
119 |
Q |
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| T |
26940634 |
actaatacctcaagtttgacaggattgcacaagacagcaaaactcacttttcaagagttttaacattactacctccttaaggccacatttaaattaagaa |
26940733 |
T |
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| Q |
120 |
tctttttaaaccgaaagagatccaaaatacgtgatacaaacgctcttatcttacctaaataataaaattactttatgtatgttggtagaaatgatcgtat |
219 |
Q |
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|||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26940734 |
tcttgttaaatcgaaagagatccaaaatacgtgatacaaacgctcttatcttacctaaataataaaattactttatgtatgttggtagaaatgatcgtat |
26940833 |
T |
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| Q |
220 |
caatgaatttgatgcaatttggttgtttctatgagtattgctggctatgtccaacatgtgaggaaaagagacaaaccagttttgtacacgattggattag |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26940834 |
caatgaatttgatgcaatttggttgtttctatgagtattgctggctatgtccaacatgtgaggaaaagagacaaaccagttttgtacacgattggattag |
26940933 |
T |
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| Q |
320 |
ataatgtggaattttccagctataacaagtgtacaagaacacaggttctg |
369 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
26940934 |
ataatgtggaattttccagctataacaagtgtacaagaacacatgttctg |
26940983 |
T |
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