View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6911_low_10 (Length: 432)
Name: NF6911_low_10
Description: NF6911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6911_low_10 |
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Alignment Details
Target: chr6 (Bit Score: 388; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 8 - 419
Target Start/End: Complemental strand, 28645253 - 28644843
Alignment:
| Q |
8 |
tggacatcaatataatttgagaaaattgaagttattgaacatacaccctttaatttgaaatgttggtgttacataggattttattccattttattctatg |
107 |
Q |
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| T |
28645253 |
tggacatcaatataatttgagaaaattgaagttattgaacatacaccctttaatttgaaatgttggtgttacataggattttattccattttattctatg |
28645154 |
T |
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| Q |
108 |
catatgtttggatgctattctagggtgaatatctagaagcaacaaatccaagcttccacgtcaacgtgaaaaaccacttggttttgataaacacaccgca |
207 |
Q |
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| T |
28645153 |
catatgtttggatgctattctagggtgaatatctagaagcaacaaatccaagcttccacgtcaacgtgaaaaaccacttggttttgataaacacaccgca |
28645054 |
T |
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| Q |
208 |
cagccaaacgtaggatattcaactccattcaactatatacgatcaatccaaacataccggataaggacttgttttcgttgaaagagttgatttcaaatgc |
307 |
Q |
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| T |
28645053 |
caaccaaacataggatattcaactccattcaactatatacgatcaatccaaacataccgg-taaggacttgttttcgttgaaagagttgatttcaaatgc |
28644955 |
T |
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| Q |
308 |
tagtaatttgaacattagaaaactttagaattttctttggtggttgaattggtggtatcttgttgttatggtagttcatacttcatagtacaaggaaatt |
407 |
Q |
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| T |
28644954 |
tagtaatttgaacattagaaacctttagaattttcttcggtggttgaattggtggtatcttgttgttatggtagttcatacttcatagtacaaggaaatt |
28644855 |
T |
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| Q |
408 |
gattgtgtgatg |
419 |
Q |
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| T |
28644854 |
gattgtgtgatg |
28644843 |
T |
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