View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6911_low_11 (Length: 401)
Name: NF6911_low_11
Description: NF6911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6911_low_11 |
 | |
|
| [»] scaffold0059 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 354; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 12 - 381
Target Start/End: Original strand, 42256896 - 42257265
Alignment:
| Q |
12 |
tggacatcacacggtaggtgtacttgaataatgcagcctataattgaatgaatccatgatgaatggaaccattcaactctttataaaagggtatggtttg |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42256896 |
tggacatcacacggtaggtgtacttgaataatgcagcctataattgaatgaatccatgatggatggaaccattcaactctttataaaagggtatggtttg |
42256995 |
T |
|
| Q |
112 |
ataccttatgactattcataaaagaattggtagagccattgtaaccctacatgaaagggtaggtcccctctccactttctctataaatatgtcttggggc |
211 |
Q |
| |
|
||||||||| ||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42256996 |
ataccttataactattcatgaaagaattgatagagccattgtaaccctacatgaaagggtaggtcccctctccactttctctataaatatgtcttggggc |
42257095 |
T |
|
| Q |
212 |
atatgcaaaagataattccatattatcacatacttacctatcaaagtttgagaaagaaggagaggaagatcctatccaagataattggaattcaagatca |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42257096 |
atatgcaaaagataattccatattatcacatacttacctatcaaagtttgagaaagaaggagaggaagatcctatccaagataattggaattcaagatca |
42257195 |
T |
|
| Q |
312 |
tcgaagagcatacatactcgttgacaatcaatggcttcaagaggtaagttctaaaccctcttatttaatt |
381 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42257196 |
tcgaagagcatacatactcgttgacaatcaatggcttcaagaggtaagttctaaaccctcttatttaatt |
42257265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 14 - 325
Target Start/End: Complemental strand, 22382221 - 22381910
Alignment:
| Q |
14 |
gacatcacacggtaggtgtacttgaataatgcagcctataattgaatgaatccatgatgaatggaaccattcaactctttataaaagggtatggtttgat |
113 |
Q |
| |
|
||||||||| ||||||||||||||||||||| |||||||| || ||||||||||||||| | ||||||||||||||||||| ||||||||| ||||||| |
|
|
| T |
22382221 |
gacatcacatggtaggtgtacttgaataatgtagcctatagttaaatgaatccatgatgggttgaaccattcaactctttatgaaagggtatagtttgat |
22382122 |
T |
|
| Q |
114 |
accttatgactattcataaaagaattggtagagccattgtaaccctacatgaaagggtaggtcccctctccactttctctataaatatgtcttggggcat |
213 |
Q |
| |
|
||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
22382121 |
accttatgactattcatgaaagaattggtagaaccattgtaaccctacatgaaagggtaggtcccctctccattttctctataaatatgtcttggggcat |
22382022 |
T |
|
| Q |
214 |
atgcaaaagataattccatattatcacatacttacctatcaaagtttgagaaagaaggagaggaagatcctatccaagataattggaattcaagatcatc |
313 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
22382021 |
atgcaaaagataattccatattatcacatgcttacctatcaaagtttgagaaagaaggagaggaagatcctatccaacataattggaattcaagatcatc |
22381922 |
T |
|
| Q |
314 |
gaagagcataca |
325 |
Q |
| |
|
|||||||||||| |
|
|
| T |
22381921 |
gaagagcataca |
22381910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 26 - 393
Target Start/End: Complemental strand, 40887599 - 40887229
Alignment:
| Q |
26 |
taggtgtacttgaataatgcagcctataattgaatgaatccatgatgaatggaaccattcaactctttataaaagggtatggtttgataccttatgacta |
125 |
Q |
| |
|
|||||| |||| ||||||| |||||||| |||||||||||||||||| ||||||||||||||||| || | ||||| ||||||||||||||||||||||| |
|
|
| T |
40887599 |
taggtgcacttaaataatgtagcctatagttgaatgaatccatgatggatggaaccattcaactcattgtgaaaggatatggtttgataccttatgacta |
40887500 |
T |
|
| Q |
126 |
ttcataaaagaattggtagagccattgtaaccctacatgaaagggtaggtcccctctccactttctct-ataaatatgtcttggggcatatgcaaaagat |
224 |
Q |
| |
|
||||| |||||||||||||| || |||||||||||||||||| |||||||| |||||||||||||||| ||||||||||||||||||||||||| ||||| |
|
|
| T |
40887499 |
ttcatgaaagaattggtagaaccgttgtaaccctacatgaaaaggtaggtctcctctccactttctctaataaatatgtcttggggcatatgcagaagat |
40887400 |
T |
|
| Q |
225 |
aattccatattatcacatacttacctatcaaagtttgagaaagaaggagaggaagatcctatcca--agataattggaattcaagatcatcgaagagcat |
322 |
Q |
| |
|
||||| || ||||||||||| |||||||||||||||||||||||| ||||||| |||||| | |||||||||||||||||| ||| |||||||| |
|
|
| T |
40887399 |
ttatccatgatactacatacttacccatcaaagtttgagaaagaaggagatgaagatcgtatccaacatataattggaattcaagattatcaaagagcat |
40887300 |
T |
|
| Q |
323 |
acatactcgttgacaatcaatggcttcaagaggtaagttctaaaccctcttatttaattttaatgatgtcc |
393 |
Q |
| |
|
|||||| |||||||||||||||| |||||||| |||||||||||| || |||| ||||||||||| ||||| |
|
|
| T |
40887299 |
acatacacgttgacaatcaatgggttcaagagataagttctaaactcttttatgtaattttaatggtgtcc |
40887229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 274; Significance: 1e-153; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 84 - 393
Target Start/End: Original strand, 39905889 - 39906198
Alignment:
| Q |
84 |
tcaactctttataaaagggtatggtttgataccttatgactattcataaaagaattggtagagccattgtaaccctacatgaaagggtaggtcccctctc |
183 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39905889 |
tcaactctttatgaaagggtatggtttgataccttatggctattcatgaaagaattggtagaaccattgtaaccctacatgaaagggtaggtcccctctc |
39905988 |
T |
|
| Q |
184 |
cactttctctataaatatgtcttggggcatatgcaaaagataattccatattatcacatacttacctatcaaagtttgagaaagaaggagaggaagatcc |
283 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39905989 |
cattttctctataaatatgtcttggggcatatgcaaaagataattctatattatcacatacttacctatcaaagtttgagaaagaaggagaggaagatcc |
39906088 |
T |
|
| Q |
284 |
tatccaagataattggaattcaagatcatcgaagagcatacatactcgttgacaatcaatggcttcaagaggtaagttctaaaccctcttatttaatttt |
383 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
39906089 |
tatccaacataattggaattcaagatcatcgaagagcatacatactcgttgacaatcaatggctttaagaggtaagttctaaaccctcttatttaatttt |
39906188 |
T |
|
| Q |
384 |
aatgatgtcc |
393 |
Q |
| |
|
|||| ||||| |
|
|
| T |
39906189 |
aatggtgtcc |
39906198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 78 - 393
Target Start/End: Complemental strand, 25019936 - 25019617
Alignment:
| Q |
78 |
aaccattcaactctttataaaagggtatggtttgataccttatgactattcataaaagaattggtagagccattgtaaccctacatgaaagggtaggtcc |
177 |
Q |
| |
|
|||||||||||||| ||| |||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
25019936 |
aaccattcaactctgtatgaaagggtatggtttgataccttatgactattcatgaaagaattggtagaaccattgtaaccctacatgaaagggtaggtcc |
25019837 |
T |
|
| Q |
178 |
cctctccactttctctataaatatgtcttggggcatatgcaaaagataattccatattatcacatacttacctatcaaagtttgagaaagaaggagagga |
277 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||| ||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
25019836 |
cctctccactttctctataaatatgtcttggggattatgcaaaagacaattccatgttattacatacttacccatcaaagtttgagaaagaaggagagga |
25019737 |
T |
|
| Q |
278 |
agatcctatccaagataattggaa-ttcaagatcatcgaagagcatacatactcgttgacaatcaatggct---tcaagaggtaagttctaaaccctctt |
373 |
Q |
| |
|
||||||||||||| |||||||||| |||||||||||| |||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
25019736 |
agatcctatccaacataattggaatttcaagatcatcaaagatcatacatactcgttgacaatcaatggcttcatcaagaggtaagttctaaaccctctt |
25019637 |
T |
|
| Q |
374 |
atttaattttaatgatgtcc |
393 |
Q |
| |
|
|||||||||||||| ||||| |
|
|
| T |
25019636 |
atttaattttaatggtgtcc |
25019617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 82 - 138
Target Start/End: Complemental strand, 54903867 - 54903811
Alignment:
| Q |
82 |
attcaactctttataaaagggtatggtttgataccttatgactattcataaaagaat |
138 |
Q |
| |
|
|||||||| |||| |||| ||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
54903867 |
attcaactttttacaaaaaggtatggtttggtaccttatgactattcataaaagaat |
54903811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 349 - 382
Target Start/End: Complemental strand, 25019450 - 25019417
Alignment:
| Q |
349 |
caagaggtaagttctaaaccctcttatttaattt |
382 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
25019450 |
caagaggtaagttctaaaccctcttatttaattt |
25019417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 144; Significance: 1e-75; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 14 - 197
Target Start/End: Complemental strand, 17481706 - 17481523
Alignment:
| Q |
14 |
gacatcacacggtaggtgtacttgaataatgcagcctataattgaatgaatccatgatgaatggaaccattcaactctttataaaagggtatggtttgat |
113 |
Q |
| |
|
||||||||| ||||||||||||||||||||| |||||||| |||||||||||||||||| ||||||||||||||||||||| ||||||||| ||||||| |
|
|
| T |
17481706 |
gacatcacatggtaggtgtacttgaataatgtagcctatagttgaatgaatccatgatgggtggaaccattcaactctttatgaaagggtatcgtttgat |
17481607 |
T |
|
| Q |
114 |
accttatgactattcataaaagaattggtagagccattgtaaccctacatgaaagggtaggtcccctctccactttctctataa |
197 |
Q |
| |
|
||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17481606 |
accttgtgactattcatgaaagaattggtagaaccattgtaaccctacatgaaagggtaggtcccctctccactttctctataa |
17481523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 195 - 386
Target Start/End: Complemental strand, 17480735 - 17480545
Alignment:
| Q |
195 |
taaatatgtcttggggcatatgcaaaagataattccatattatcacatacttacctatcaaagtttgagaaagaaggagaggaagatcctatccaagata |
294 |
Q |
| |
|
|||||||||||||||||||||||||||||| || ||||||||| ||||||||||| |||||| |||| |||||||||||||||||||||||||||||||| |
|
|
| T |
17480735 |
taaatatgtcttggggcatatgcaaaagattat-ccatattattacatacttacccatcaaaatttgggaaagaaggagaggaagatcctatccaagata |
17480637 |
T |
|
| Q |
295 |
attggaattcaagatcatcgaagagcatacatactcgttgacaatcaatggcttcaagaggtaagttctaaaccctcttatttaattttaat |
386 |
Q |
| |
|
|||| ||||||||||| || |||||||| ||||| |||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
17480636 |
attgaaattcaagatcgtcaaagagcatgcatacacgttgataatcaatggcttcaagaggtaagttataaaccctcttatttaattttaat |
17480545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 68; Significance: 3e-30; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 319 - 386
Target Start/End: Original strand, 22726873 - 22726940
Alignment:
| Q |
319 |
gcatacatactcgttgacaatcaatggcttcaagaggtaagttctaaaccctcttatttaattttaat |
386 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22726873 |
gcatacatactcgttgacaatcaatggcttcaagaggtaagttctaaaccctcttatttaattttaat |
22726940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 29 - 129
Target Start/End: Original strand, 14077573 - 14077673
Alignment:
| Q |
29 |
gtgtacttgaataatgcagcctataattgaatgaatccatgatgaatggaaccattcaactctttataaaagggtatggtttgataccttatgactattc |
128 |
Q |
| |
|
|||| ||||||| ||| | | ||||||| |||||||| |||||| | |||||||||||| || || |||||||||||||||||||||||||||||||| |
|
|
| T |
14077573 |
gtgtgcttgaatcatgtaacttataattaaatgaatctatgatgggttaaaccattcaacttttcatgaaagggtatggtttgataccttatgactattc |
14077672 |
T |
|
| Q |
129 |
a |
129 |
Q |
| |
|
| |
|
|
| T |
14077673 |
a |
14077673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 118 - 201
Target Start/End: Original strand, 36931684 - 36931767
Alignment:
| Q |
118 |
tatgactattcataaaagaattggtagagccattgtaaccctacatgaaagggtaggtcccctctccactttctctataaatat |
201 |
Q |
| |
|
||||||||| ||||||| | |||||||| ||||| | || |||||||||||||||| ||||| ||||||||| |||||||| |
|
|
| T |
36931684 |
tatgactatacataaaatagttggtagaaccatttttactctacatgaaagggtagacatcctctacactttctcaataaatat |
36931767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 292 - 393
Target Start/End: Complemental strand, 2848965 - 2848860
Alignment:
| Q |
292 |
ataattggaattcaagatcatcgaagagcatacat----actcgttgacaatcaatggcttcaagaggtaagttctaaaccctcttatttaattttaatg |
387 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||| || ||| ||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |
|
|
| T |
2848965 |
ataattggaattcaagatcatcaaagagcatacatgtatacacgtcgacaatcaatggcttcaagagttaagttctaaatcctcttatttaattttaatg |
2848866 |
T |
|
| Q |
388 |
atgtcc |
393 |
Q |
| |
|
||||| |
|
|
| T |
2848865 |
gtgtcc |
2848860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 103 - 182
Target Start/End: Original strand, 46631459 - 46631538
Alignment:
| Q |
103 |
tatggtttgataccttatgactattcataaaagaattggtagagccattgtaaccctacatgaaagggtaggtcccctct |
182 |
Q |
| |
|
|||||||||||| ||||| ||||| || ||| |||||||||| ||||||||||| |||| |||||||| ||| ||||| |
|
|
| T |
46631459 |
tatggtttgatatcttatagctattaatgaaataattggtagaatcattgtaacccgacattaaagggtaagtctcctct |
46631538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 49 - 129
Target Start/End: Original strand, 8939128 - 8939207
Alignment:
| Q |
49 |
ctataattgaatgaatccatgatgaatggaaccattcaactctttataaaagggtatggtttgataccttatgactattca |
129 |
Q |
| |
|
||||| || |||||||||||||| |||| ||||||||||||||| |||||||||||| ||| ||| |||||||||||||| |
|
|
| T |
8939128 |
ctatagttaaatgaatccatgataaatg-aaccattcaactcttcgtaaaagggtatgattttatatcttatgactattca |
8939207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0059 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0059
Description:
Target: scaffold0059; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 77 - 196
Target Start/End: Complemental strand, 21389 - 21274
Alignment:
| Q |
77 |
gaaccattcaactctttataaaagggtatggtttgataccttatgactattcataaaagaattggtagagccattgtaaccctacatgaaagggtaggtc |
176 |
Q |
| |
|
|||||||||||||||| | |||| ||||||||| |||||||| ||| ||||||| || ||||| ||| | |||||||| ||||||||||| ||| |
|
|
| T |
21389 |
gaaccattcaactcttcaagaaagagtatggtttagtaccttataact----ttaaaagatttagtagaaccactataaccctatatgaaagggtatgtc |
21294 |
T |
|
| Q |
177 |
ccctctccactttctctata |
196 |
Q |
| |
|
| |||||||||||||||||| |
|
|
| T |
21293 |
ctctctccactttctctata |
21274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 29 - 115
Target Start/End: Complemental strand, 48228924 - 48228839
Alignment:
| Q |
29 |
gtgtacttgaataatgcagcctataattgaatgaatccatgatgaatggaaccattcaactctttataaaagggtatggtttgatac |
115 |
Q |
| |
|
|||| ||||||||||| ||| |||| || ||||||| ||||||| ||| |||||||||||| ||||| ||||| ||| ||||||||| |
|
|
| T |
48228924 |
gtgtgcttgaataatgaagcatatagttaaatgaattcatgatggatg-aaccattcaactttttatgaaaggttatagtttgatac |
48228839 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 153 - 201
Target Start/End: Complemental strand, 48228824 - 48228776
Alignment:
| Q |
153 |
taaccctacatgaaagggtaggtcccctctccactttctctataaatat |
201 |
Q |
| |
|
||||| ||||| ||||| ||||| ||||||||||||||| ||||||||| |
|
|
| T |
48228824 |
taaccttacataaaaggataggttccctctccactttctttataaatat |
48228776 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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