View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6911_low_12 (Length: 397)
Name: NF6911_low_12
Description: NF6911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6911_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 5 - 383
Target Start/End: Original strand, 42529543 - 42529921
Alignment:
| Q |
5 |
agcccattgttatagaattagcacgcctccataccttccaatttgaaccaattatatgttctagcagtatttcaactagcttctagttattgacagttaa |
104 |
Q |
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| T |
42529543 |
agcccattgttatagaattagcacgcctccataccttccaatttgaaccaattatatgttctagcagtatttcaactagcttctagttattgacagttaa |
42529642 |
T |
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| Q |
105 |
tttatcatctacatgttcatacattctccatctgctgccataactattactggttgattaacatcacttccccacacccctaaatgatatgaattaactg |
204 |
Q |
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| T |
42529643 |
tttatcatctacatgttcatacattctccatctgctgccataactattactggttgatcaacatcacttccccacacccctaaatgatatgaattaactg |
42529742 |
T |
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| Q |
205 |
attagacatttcttttgattatatattctgctactcgcagctattattccagctaatttataggggtttcattattgagctatatatgagtagtattatg |
304 |
Q |
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| T |
42529743 |
attagacatttctttcgattatatattctgctacttgcagctattattccagctaatttataggggtttcattattgagctatatatgagtagtattatg |
42529842 |
T |
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| Q |
305 |
gtcatgggtgtggttgacatgttgatacctttgtgataatttgattaaagttttgggtttcatctcactgccttgatgt |
383 |
Q |
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| T |
42529843 |
gtcatgggtgtggttgacatgttgatacctttgtgataatttgattaaagttttgggtttcatctcactgccttgatgt |
42529921 |
T |
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