View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6911_low_18 (Length: 357)

Name: NF6911_low_18
Description: NF6911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6911_low_18
NF6911_low_18
[»] chr4 (10 HSPs)
chr4 (108-346)||(40688575-40688813)
chr4 (112-346)||(19162570-19162804)
chr4 (110-279)||(54685121-54685290)
chr4 (120-321)||(7099003-7099204)
chr4 (232-280)||(38296339-38296387)
chr4 (9-46)||(19162879-19162916)
chr4 (9-46)||(40688467-40688504)
chr4 (179-258)||(55725187-55725266)
chr4 (232-278)||(29328238-29328284)
chr4 (9-46)||(54685011-54685048)
[»] chr7 (7 HSPs)
chr7 (107-346)||(45164952-45165191)
chr7 (110-322)||(6335821-6336033)
chr7 (236-322)||(29557847-29557933)
chr7 (238-311)||(17503987-17504060)
chr7 (238-311)||(17549154-17549227)
chr7 (121-174)||(17504124-17504177)
chr7 (121-174)||(17549037-17549090)
[»] chr2 (9 HSPs)
chr2 (107-346)||(13416179-13416418)
chr2 (108-352)||(2207209-2207453)
chr2 (111-198)||(6727319-6727406)
chr2 (193-235)||(6725087-6725129)
chr2 (9-46)||(6727480-6727517)
chr2 (235-311)||(44028648-44028724)
chr2 (223-282)||(11028494-11028553)
chr2 (238-280)||(10689193-10689235)
chr2 (9-42)||(13416084-13416117)
[»] chr5 (3 HSPs)
chr5 (107-346)||(36256286-36256523)
chr5 (195-261)||(18896145-18896211)
chr5 (182-279)||(35637718-35637815)
[»] chr3 (6 HSPs)
chr3 (111-344)||(8130463-8130697)
chr3 (223-282)||(23819188-23819247)
chr3 (238-281)||(30188429-30188472)
chr3 (238-280)||(52250584-52250626)
chr3 (233-314)||(16179581-16179662)
chr3 (238-311)||(31920779-31920852)
[»] chr8 (3 HSPs)
chr8 (107-279)||(4310302-4310474)
chr8 (223-282)||(36157777-36157836)
chr8 (9-46)||(4310535-4310572)
[»] chr6 (4 HSPs)
chr6 (110-310)||(15602835-15603035)
chr6 (180-248)||(10919955-10920023)
chr6 (107-153)||(13086047-13086093)
chr6 (9-46)||(15602725-15602762)
[»] chr1 (6 HSPs)
chr1 (180-281)||(27393407-27393508)
chr1 (180-309)||(20987736-20987865)
chr1 (235-276)||(33260156-33260197)
chr1 (235-276)||(33280315-33280356)
chr1 (223-282)||(28097423-28097482)
chr1 (9-46)||(30712581-30712618)
[»] scaffold1809 (1 HSPs)
scaffold1809 (224-322)||(1216-1314)
[»] scaffold0026 (1 HSPs)
scaffold0026 (180-221)||(67661-67702)


Alignment Details
Target: chr4 (Bit Score: 175; Significance: 4e-94; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 108 - 346
Target Start/End: Original strand, 40688575 - 40688813
Alignment:
Q  108 ctctaatcctaccaacctccttccaccaaaaagaaccacttcggccatcgtcctcaaacctcccatcactaacaccatacctagaaaccaacacccgata 207  Q
    |||||||||||||||||||||||||||||||||||||||| |||||  | ||||| ||||||||||| ||||||||||| |||  |||||||||||||||    
T  40688575 ctctaatcctaccaacctccttccaccaaaaagaaccactccggcccccatcctccaacctcccatccctaacaccatatctaccaaccaacacccgata 40688674  T
Q  208 ccataaccctcctcgatcaacaagtaacctccaacaccacttccctaacaacgcctcattaaactccctcaactgcataactcctaatccaccatactcc 307  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||    
T  40688675 ccacaaccctcctcgatcaacaagtaacctccaacaccacttccctaacaacgcctcattaaactccctcaactgcctaactcctaaaccaccatactcc 40688774  T
Q  308 tttctcatacaaacacactgtcaacccacccaagatatt 346  Q
    |||||||||||||  | ||| ||||||||||||||||||    
T  40688775 tttctcatacaaattctctgccaacccacccaagatatt 40688813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 112 - 346
Target Start/End: Complemental strand, 19162804 - 19162570
Alignment:
Q  112 aatcctaccaacctccttccaccaaaaagaaccacttcggccatcgtcctcaaacctcccatcactaacaccatacctagaaaccaacacccgataccat 211  Q
    |||||||||||||||||||||||||||||||||||| |||||  | ||||| |||||||| || ||||||||||| |||| ||||||||||| ||||||     
T  19162804 aatcctaccaacctccttccaccaaaaagaaccactccggcccccatcctccaacctcccgtccctaacaccatatctagcaaccaacaccctataccac 19162705  T
Q  212 aaccctcctcgatcaacaagtaacctccaacaccacttccctaacaacgcctcattaaactccctcaactgcataactcctaatccaccatactcctttc 311  Q
    |||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| || |||||||||| ||||||||||||||||    
T  19162704 aaccctccacgatcaacaagtaatctccatcaccacttccctaacaacgcctcattaaactccctcaaccgcctaactcctaaaccaccatactcctttc 19162605  T
Q  312 tcatacaaacacactgtcaacccacccaagatatt 346  Q
    |||||||||| | ||| ||||||||| ||||||||    
T  19162604 tcatacaaactctctgccaacccacctaagatatt 19162570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 110 - 279
Target Start/End: Original strand, 54685121 - 54685290
Alignment:
Q  110 ctaatcctaccaacctccttccaccaaaaagaaccacttcggccatcgtcctcaaacctcccatcactaacaccatacctagaaaccaacacccgatacc 209  Q
    |||||||||| | ||||  ||||||||| |||||||||  ||||  | ||||| |||||||||||||  ||||||||||||| |||||||||| ||||||    
T  54685121 ctaatcctacgatcctctgtccaccaaatagaaccactctggcccccatcctccaacctcccatcacgcacaccatacctagcaaccaacacctgatacc 54685220  T
Q  210 ataaccctcctcgatcaacaagtaacctccaacaccacttccctaacaacgcctcattaaactccctcaa 279  Q
    ||||||||| || |||||| | ||| ||||||||||| ||||| ||||| |||||||| ||||| |||||    
T  54685221 ataaccctcttctatcaactaataatctccaacaccatttccccaacaatgcctcattgaactctctcaa 54685290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 120 - 321
Target Start/End: Original strand, 7099003 - 7099204
Alignment:
Q  120 caacctccttccaccaaaaagaaccacttcggccatcgtcctcaaacctcccatcactaacaccatacctagaaaccaacacccgataccataaccctcc 219  Q
    |||||||||||||||||| ||||||||| |||||  | ||||| |||||| ||||     ||||||| ||||  | ||| ||||||||||| || ||  |    
T  7099003 caacctccttccaccaaatagaaccactccggcccccatcctccaacctctcatcctcctcaccatatctagctatcaaaacccgataccacaaaccctc 7099102  T
Q  220 tcgatcaacaagtaacctccaacaccacttccctaacaacgcctcattaaactccctcaactgcataactcctaatccaccatactcctttctcatacaa 319  Q
    ||||||||| |  || ||||||||| |||| || |||||||||||||||||||||||||||||| |||| || || || ||||||||||||  |||||||    
T  7099103 tcgatcaactaacaaactccaacacaactttcccaacaacgcctcattaaactccctcaactgcctaacacccaaacctccatactcctttagcatacaa 7099202  T
Q  320 ac 321  Q
    ||    
T  7099203 ac 7099204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 232 - 280
Target Start/End: Original strand, 38296339 - 38296387
Alignment:
Q  232 taacctccaacaccacttccctaacaacgcctcattaaactccctcaac 280  Q
    ||||| ||||||||| |||||||| ||||||||||||||||||||||||    
T  38296339 taaccgccaacaccatttccctaataacgcctcattaaactccctcaac 38296387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 9 - 46
Target Start/End: Complemental strand, 19162916 - 19162879
Alignment:
Q  9 ggacatcaccacaccaccgctcatgccaaaacaaagta 46  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  19162916 ggacatctccacaccaccgctcatgccaaaacaaagta 19162879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 9 - 46
Target Start/End: Original strand, 40688467 - 40688504
Alignment:
Q  9 ggacatcaccacaccaccgctcatgccaaaacaaagta 46  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  40688467 ggacatctccacaccaccgctcatgccaaaacaaagta 40688504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 179 - 258
Target Start/End: Complemental strand, 55725266 - 55725187
Alignment:
Q  179 acaccatacctagaaaccaacacccgataccataaccctcctcgatcaacaagtaacctccaacaccacttccctaacaa 258  Q
    |||||||||||||  |||||||||| ||||||||| ||  ||| ||| || |  |||||||||||||| |||||||||||    
T  55725266 acaccatacctagccaccaacaccctataccataatccatctctatctactaacaacctccaacaccatttccctaacaa 55725187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 278
Target Start/End: Complemental strand, 29328284 - 29328238
Alignment:
Q  232 taacctccaacaccacttccctaacaacgcctcattaaactccctca 278  Q
    ||||| |||||||||||| ||||||||||| | ||||||||||||||    
T  29328284 taaccgccaacaccactttcctaacaacgcatgattaaactccctca 29328238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 46
Target Start/End: Original strand, 54685011 - 54685048
Alignment:
Q  9 ggacatcaccacaccaccgctcatgccaaaacaaagta 46  Q
    |||||||||||||||| || ||||||||||||||||||    
T  54685011 ggacatcaccacaccaacgatcatgccaaaacaaagta 54685048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 168; Significance: 6e-90; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 107 - 346
Target Start/End: Complemental strand, 45165191 - 45164952
Alignment:
Q  107 tctctaatcctaccaacctccttccaccaaaaagaaccacttcggccatcgtcctcaaacctcccatcactaacaccatacctagaaaccaacacccgat 206  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||  | ||||| ||||||||||| ||||||||||| |||| ||||||||||| ||    
T  45165191 tctctaatcctaccaacctccttccaccaaaaagaaccactccggcctccatcctccaacctcccatccctaacaccatatctagcaaccaacaccccat 45165092  T
Q  207 accataaccctcctcgatcaacaagtaacctccaacaccacttccctaacaacgcctcattaaactccctcaactgcataactcctaatccaccatactc 306  Q
    |||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| |||||||||||    
T  45165091 accacaaccctccacgatcaacaagtaatctccaacaccacttccctaacaacgcctcattaaactccctcaaccgcctaactcctaaaccaccatactc 45164992  T
Q  307 ctttctcatacaaacacactgtcaacccacccaagatatt 346  Q
    ||||||||||||||| | ||| ||||||||||||||||||    
T  45164991 ctttctcatacaaactctctgccaacccacccaagatatt 45164952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 110 - 322
Target Start/End: Complemental strand, 6336033 - 6335821
Alignment:
Q  110 ctaatcctaccaacctccttccaccaaaaagaaccacttcggccatcgtcctcaaacctcccatcactaacaccatacctagaaaccaacacccgatacc 209  Q
    |||||||||| ||||||| ||||||||| |||||||||  ||||  | ||||| ||||||||||| |  ||||||||||||| |||||||||||||||||    
T  6336033 ctaatcctacgaacctccgtccaccaaatagaaccactctggcccccatcctccaacctcccatcgcgcacaccatacctagcaaccaacacccgatacc 6335934  T
Q  210 ataaccctcctcgatcaacaagtaacctccaacaccacttccctaacaacgcctcattaaactccctcaactgcataactcctaatccaccatactcctt 309  Q
    |||||||||||| ||| || | ||| || |||||||| || || ||||| |||||||| ||||||| ||||||| |||||||||| || || ||||||||    
T  6335933 ataaccctcctctatctactaataatcttcaacaccatttacccaacaatgcctcattgaactcccgcaactgcctaactcctaaccccccgtactcctt 6335834  T
Q  310 tctcatacaaaca 322  Q
    | ||| |||||||    
T  6335833 tttcaaacaaaca 6335821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 236 - 322
Target Start/End: Original strand, 29557847 - 29557933
Alignment:
Q  236 ctccaacaccacttccctaacaacgcctcattaaactccctcaactgcataactcctaatccaccatactcctttctcatacaaaca 322  Q
    ||||| |||||||| || ||||||||||| ||||| |||||||| ||| |||| || || ||||||||||| || ||||||||||||    
T  29557847 ctccatcaccactttcccaacaacgcctcgttaaattccctcaattgcctaaccccaaacccaccatactcgttcctcatacaaaca 29557933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 238 - 311
Target Start/End: Complemental strand, 17504060 - 17503987
Alignment:
Q  238 ccaacaccacttccctaacaacgcctcattaaactccctcaactgcataactcctaatccaccatactcctttc 311  Q
    |||||||||||| ||||||||||||| ||||||  |  |||||||  |||| ||||| ||||||||||||||||    
T  17504060 ccaacaccacttacctaacaacgcctaattaaaaacattcaactgtctaacgcctaaaccaccatactcctttc 17503987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 238 - 311
Target Start/End: Original strand, 17549154 - 17549227
Alignment:
Q  238 ccaacaccacttccctaacaacgcctcattaaactccctcaactgcataactcctaatccaccatactcctttc 311  Q
    |||||||||||| ||||||||||||| ||||||  |  |||||||  |||| ||||| ||||||||||||||||    
T  17549154 ccaacaccacttacctaacaacgcctaattaaaaacattcaactgtctaacgcctaaaccaccatactcctttc 17549227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 174
Target Start/End: Complemental strand, 17504177 - 17504124
Alignment:
Q  121 aacctccttccaccaaaaagaaccacttcggccatcgtcctcaaacctcccatc 174  Q
    ||||||||||||||| ||||||||||| |||||  | ||||| |||||||||||    
T  17504177 aacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatc 17504124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 174
Target Start/End: Original strand, 17549037 - 17549090
Alignment:
Q  121 aacctccttccaccaaaaagaaccacttcggccatcgtcctcaaacctcccatc 174  Q
    ||||||||||||||| ||||||||||| |||||  | ||||| |||||||||||    
T  17549037 aacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatc 17549090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 148; Significance: 5e-78; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 107 - 346
Target Start/End: Original strand, 13416179 - 13416418
Alignment:
Q  107 tctctaatcctaccaacctccttccaccaaaaagaaccacttcggccatcgtcctcaaacctcccatcactaacaccatacctagaaaccaacacccgat 206  Q
    ||||||||||||| ||||||||||||||||| ||||||||| |||||  | ||||| |||||||||||||  ||||||||||||| ||||||||||||||    
T  13416179 tctctaatcctactaacctccttccaccaaatagaaccactccggcccccatcctccaacctcccatcacgcacaccatacctagcaaccaacacccgat 13416278  T
Q  207 accataaccctcctcgatcaacaagtaacctccaacaccacttccctaacaacgcctcattaaactccctcaactgcataactcctaatccaccatactc 306  Q
    |||| |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||     
T  13416279 accacaaccctcaacgatcaacaagtaacctccaacaccacttccctaacaacgcctcattaaactccctcaaccgcctaactcctaatccaccatactt 13416378  T
Q  307 ctttctcatacaaacacactgtcaacccacccaagatatt 346  Q
    |||||| | ||| |||| ||| || | |||||||||||||    
T  13416379 ctttcttacacacacactctgccagctcacccaagatatt 13416418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 108 - 352
Target Start/End: Complemental strand, 2207453 - 2207209
Alignment:
Q  108 ctctaatcctaccaacctccttccaccaaaaagaaccacttcggccatcgtcctcaaacctcccatcactaacaccatacctagaaaccaacacccgata 207  Q
    |||||||||| ||||||||||||||||||||||||||||  |||||  | ||||| |||||||| |  || |||||||| | ||  |||||||||| |||    
T  2207453 ctctaatcctcccaacctccttccaccaaaaagaaccaccccggcccccatcctccaacctcccgttcctcacaccatatcgagcgaccaacaccctata 2207354  T
Q  208 ccataaccctcctcgatcaacaagtaacctccaacaccacttccctaacaacgcctcattaaactccctcaactgcataactcctaatccaccatactcc 307  Q
    ||| |||||||| || || |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |  |||||||||| ||||||||||||    
T  2207353 ccacaaccctccacggtccacaagtaatctccaacaccacttccctaacaacgcctcattaaactccctcaaccgtctaactcctaacccaccatactcc 2207254  T
Q  308 tttctcatacaaacacactgtcaacccacccaagatattcttcga 352  Q
    |||||| ||||||| |  || |||||||||||||| ||| |||||    
T  2207253 tttctcttacaaactcgttgccaacccacccaagaaatttttcga 2207209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 111 - 198
Target Start/End: Complemental strand, 6727406 - 6727319
Alignment:
Q  111 taatcctaccaacctccttccaccaaaaagaaccacttcggccatcgtcctcaaacctcccatcactaacaccatacctagaaaccaa 198  Q
    |||||||||||| |||||||||||||| ||||||||| |||||  | ||||| |||||||||||||  ||||||||||||| ||||||    
T  6727406 taatcctaccaatctccttccaccaaatagaaccactccggcccccatcctccaacctcccatcacgtacaccatacctagcaaccaa 6727319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 193 - 235
Target Start/End: Complemental strand, 6725129 - 6725087
Alignment:
Q  193 aaccaacacccgataccataaccctcctcgatcaacaagtaac 235  Q
    |||||||||||||||||| ||||||||||||||||||||||||    
T  6725129 aaccaacacccgataccacaaccctcctcgatcaacaagtaac 6725087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 9 - 46
Target Start/End: Complemental strand, 6727517 - 6727480
Alignment:
Q  9 ggacatcaccacaccaccgctcatgccaaaacaaagta 46  Q
    ||||||||||||||||||||||||||||||||||||||    
T  6727517 ggacatcaccacaccaccgctcatgccaaaacaaagta 6727480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 235 - 311
Target Start/End: Complemental strand, 44028724 - 44028648
Alignment:
Q  235 cctccaacaccacttccctaacaacgcctcattaaactccctcaactgcataactcctaatccaccatactcctttc 311  Q
    |||||| |||||||| |||| ||||||||||||||||||| |||||||  |||| || || || |||||||||||||    
T  44028724 cctccagcaccacttacctagcaacgcctcattaaactccttcaactgtctaacacccaaacctccatactcctttc 44028648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 223 - 282
Target Start/End: Original strand, 11028494 - 11028553
Alignment:
Q  223 atcaacaagtaacctccaacaccacttccctaacaacgcctcattaaactccctcaactg 282  Q
    ||||||||| | ||||||||||||||| |||||||| |||| |||||||||| |||||||    
T  11028494 atcaacaagcatcctccaacaccactttcctaacaaagcctgattaaactccttcaactg 11028553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 280
Target Start/End: Original strand, 10689193 - 10689235
Alignment:
Q  238 ccaacaccacttccctaacaacgcctcattaaactccctcaac 280  Q
    |||||||||||| |||||||||||  |||||||||||||||||    
T  10689193 ccaacaccactttcctaacaacgcaacattaaactccctcaac 10689235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 42
Target Start/End: Original strand, 13416084 - 13416117
Alignment:
Q  9 ggacatcaccacaccaccgctcatgccaaaacaa 42  Q
    ||||| ||||||||||||||||||||||||||||    
T  13416084 ggacaccaccacaccaccgctcatgccaaaacaa 13416117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 141; Significance: 7e-74; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 107 - 346
Target Start/End: Original strand, 36256286 - 36256523
Alignment:
Q  107 tctctaatcctaccaacctccttccaccaaaaagaaccacttcggccatcgtcctcaaacctcccatcactaacaccatacctagaaaccaacacccgat 206  Q
    |||||||||||||||||||| |||||||||||||||||||| |||||  | ||||| ||||||||||| ||||||||||| |||  ||||||||||| ||    
T  36256286 tctctaatcctaccaacctctttccaccaaaaagaaccactccggcccccatcctccaacctcccatccctaacaccatatctaacaaccaacaccctat 36256385  T
Q  207 accataaccctcctcgatcaacaagtaacctccaacaccacttccctaacaacgcctcattaaactccctcaactgcataactcctaatccaccatactc 306  Q
    |||| |||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||| |||||||||| |||||||||||    
T  36256386 accacaaccctccacgatcaacaagtaatctccaacatcacttccctaacaacgcctcattaaactctctcaactgcctaactcctaaaccaccatactc 36256485  T
Q  307 ctttctcatacaaacacactgtcaacccacccaagatatt 346  Q
     ||||||| ||||  || ||| ||||||||||||||||||    
T  36256486 atttctcagacaa--actctgccaacccacccaagatatt 36256523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 195 - 261
Target Start/End: Original strand, 18896145 - 18896211
Alignment:
Q  195 ccaacacccgataccataaccctcctcgatcaacaagtaacctccaacaccacttccctaacaacgc 261  Q
    |||||| || |||||| |||||||||| |||||| |  || |||||||||||||| |||||||||||    
T  18896145 ccaacatcctataccacaaccctcctctatcaaccaacaatctccaacaccacttacctaacaacgc 18896211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 279
Target Start/End: Original strand, 35637718 - 35637815
Alignment:
Q  182 ccatacctagaaaccaacacccgataccataaccctcctcgatcaacaagtaacctccaacaccacttccctaacaacgcctcattaaactccctcaa 279  Q
    |||||||| | ||||||||||   |||||||| ||||||| |||||| |  ||||||||||||||||| ||||| || ||   ||| |||||||||||    
T  35637718 ccatacctcgcaaccaacaccttgtaccataaacctcctctatcaaccaacaacctccaacaccactttcctaataatgcaaaatttaactccctcaa 35637815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 127; Significance: 2e-65; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 111 - 344
Target Start/End: Original strand, 8130463 - 8130697
Alignment:
Q  111 taatcctaccaacctccttccaccaaaaagaaccacttcggccatcgtcctcaaacctcccatcactaacaccatacctagaaaccaacacccgatacca 210  Q
    ||||||||| ||||||||||||||||||||||||||| |||||  |  |||| |||||||||||||  ||||||||||||| ||||||||||| ||||||    
T  8130463 taatcctactaacctccttccaccaaaaagaaccactccggcccccaacctccaacctcccatcacgcacaccatacctagcaaccaacaccctatacca 8130562  T
Q  211 taaccctcctcgatcaacaagtaacctccaacaccacttccctaacaacgcctcattaaactccctcaactgcataactcct-aatccaccatactcctt 309  Q
     |||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||  || |||||||| || || ||| |||||||    
T  8130563 caaccctccacgatcaacaagtaacctccaacaccacttccctagcaacgcctcattaaactccctcaatcgcctaactcctaaaccccccagactcctt 8130662  T
Q  310 tctcatacaaacacactgtcaacccacccaagata 344  Q
    ||||| |||||||| ||| || | |||||||||||    
T  8130663 tctcaaacaaacactctgccagctcacccaagata 8130697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 223 - 282
Target Start/End: Original strand, 23819188 - 23819247
Alignment:
Q  223 atcaacaagtaacctccaacaccacttccctaacaacgcctcattaaactccctcaactg 282  Q
    ||||||||| | ||||||||||||||| |||||||| |||| |||||| ||| |||||||    
T  23819188 atcaacaagcatcctccaacaccactttcctaacaaagcctgattaaattccttcaactg 23819247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 238 - 281
Target Start/End: Original strand, 30188429 - 30188472
Alignment:
Q  238 ccaacaccacttccctaacaacgcctcattaaactccctcaact 281  Q
    |||||||||||| |||||||||||  ||||||||||||||||||    
T  30188429 ccaacaccactttcctaacaacgctacattaaactccctcaact 30188472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 280
Target Start/End: Complemental strand, 52250626 - 52250584
Alignment:
Q  238 ccaacaccacttccctaacaacgcctcattaaactccctcaac 280  Q
    ||||||||| ||||||||||||||  |||||||||||||||||    
T  52250626 ccaacaccatttccctaacaacgcaacattaaactccctcaac 52250584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 314
Target Start/End: Original strand, 16179581 - 16179662
Alignment:
Q  233 aacctccaacaccacttccctaacaacgcctcattaaactccctcaactgcataactcctaatccaccatactcctttctca 314  Q
    |||||||||||||| ||||| ||||| ||  |||||||||||||||||  | ||||||| || ||  |||||||||| ||||    
T  16179581 aacctccaacaccatttccccaacaaagcgacattaaactccctcaacctcctaactcccaacccttcatactccttcctca 16179662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 311
Target Start/End: Complemental strand, 31920852 - 31920779
Alignment:
Q  238 ccaacaccacttccctaacaacgcctcattaaactccctcaactgcataactcctaatccaccatactcctttc 311  Q
    ||||||||| || |||||||| || |  |||||||||||||||||  | |||||||| || |||||||||||||    
T  31920852 ccaacaccatttacctaacaaagcatggttaaactccctcaactgtctcactcctaaccctccatactcctttc 31920779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 125; Significance: 3e-64; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 107 - 279
Target Start/End: Complemental strand, 4310474 - 4310302
Alignment:
Q  107 tctctaatcctaccaacctccttccaccaaaaagaaccacttcggccatcgtcctcaaacctcccatcactaacaccatacctagaaaccaacacccgat 206  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||  | ||||| ||||||||||| |||||| |||| |||| ||||||||||| ||    
T  4310474 tctctaatcctaccaacctccttccaccaaaaagaaccactccggcccccatcctccaacctcccatccctaacatcatatctagcaaccaacaccctat 4310375  T
Q  207 accataaccctcctcgatcaacaagtaacctccaacaccacttccctaacaacgcctcattaaactccctcaa 279  Q
    |||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4310374 accacaaccctccacgatcaacaagtaacctccaacaccacttccctaacaacgcctcattaaactccctcaa 4310302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 223 - 282
Target Start/End: Original strand, 36157777 - 36157836
Alignment:
Q  223 atcaacaagtaacctccaacaccacttccctaacaacgcctcattaaactccctcaactg 282  Q
    ||||||||| | ||||||||||||||| |||||||| |||| |||||||||| |||||||    
T  36157777 atcaacaagcatcctccaacaccactttcctaacaaagcctgattaaactccttcaactg 36157836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 46
Target Start/End: Complemental strand, 4310572 - 4310535
Alignment:
Q  9 ggacatcaccacaccaccgctcatgccaaaacaaagta 46  Q
    ||||||| ||||||||||||||||||||||||| ||||    
T  4310572 ggacatctccacaccaccgctcatgccaaaacatagta 4310535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 89; Significance: 8e-43; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 110 - 310
Target Start/End: Original strand, 15602835 - 15603035
Alignment:
Q  110 ctaatcctaccaacctccttccaccaaaaagaaccacttcggccatcgtcctcaaacctcccatcactaacaccatacctagaaaccaacacccgatacc 209  Q
    |||||||||| ||||||| ||||||||| ||||||||| |||||  | ||||| |||||||||||||  ||||||||||||| |||||||||| ||||||    
T  15602835 ctaatcctacgaacctccatccaccaaatagaaccactccggcccccatcctccaacctcccatcacgcacaccatacctagcaaccaacacctgatacc 15602934  T
Q  210 ataaccctcctcgatcaacaagtaacctccaacaccacttccctaacaacgcctcattaaactccctcaactgcataactcctaatccaccatactcctt 309  Q
    ||||||||| || |||||| | ||| |||| |||||| ||||| ||||| |||||||| ||||| | ||||||| |||||||||| || || ||||||||    
T  15602935 ataaccctcttctatcaactaataatctccgacaccatttccccaacaatgcctcattgaactctcgcaactgcctaactcctaaccccccgtactcctt 15603034  T
Q  310 t 310  Q
    |    
T  15603035 t 15603035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 248
Target Start/End: Complemental strand, 10920023 - 10919955
Alignment:
Q  180 caccatacctagaaaccaacacccgataccataaccctcctcgatcaacaagtaacctccaacaccact 248  Q
    |||||||||||| ||||||||||| |||||| ||||| |||| |||||| |  | ||||||||||||||    
T  10920023 caccatacctagcaaccaacaccctataccaaaacccccctctatcaaccaacatcctccaacaccact 10919955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 107 - 153
Target Start/End: Original strand, 13086047 - 13086093
Alignment:
Q  107 tctctaatcctaccaacctccttccaccaaaaagaaccacttcggcc 153  Q
    ||||||||||| || |||||||||||||||||||||| ||| |||||    
T  13086047 tctctaatcctccctacctccttccaccaaaaagaacaactccggcc 13086093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 46
Target Start/End: Original strand, 15602725 - 15602762
Alignment:
Q  9 ggacatcaccacaccaccgctcatgccaaaacaaagta 46  Q
    |||||||||||||||| || ||||||||||||||||||    
T  15602725 ggacatcaccacaccaacgatcatgccaaaacaaagta 15602762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 4e-17; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 180 - 281
Target Start/End: Complemental strand, 27393508 - 27393407
Alignment:
Q  180 caccatacctagaaaccaacacccgataccataaccctcctcgatcaacaagtaacctccaacaccacttccctaacaacgcctcattaaactccctcaa 279  Q
    |||||||||||| ||||||||||  ||||||||| ||||||| |||||| |  ||||||||||||||||| |||||||| ||   ||||||||||| |||    
T  27393508 caccatacctagcaaccaacaccatataccataaacctcctctatcaaccaacaacctccaacaccactttcctaacaatgcaagattaaactcccgcaa 27393409  T
Q  280 ct 281  Q
    ||    
T  27393408 ct 27393407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 180 - 309
Target Start/End: Original strand, 20987736 - 20987865
Alignment:
Q  180 caccatacctagaaaccaacacccgataccataaccctcctcgatcaacaagtaacctccaacaccacttccctaacaacgcctcattaaactccctcaa 279  Q
    ||||||||| ||  |||||||||| || |||||||||| ||| ||| || |  | |||||| ||||| ||||||||||||||   |||||| ||||||||    
T  20987736 caccataccgagccaccaacaccctatgccataacccttctctatccaccaacatcctccagcaccatttccctaacaacgcagtattaaattccctcaa 20987835  T
Q  280 ctgcataactcctaatccaccatactcctt 309  Q
    |||| |||| || |  |||||| |||||||    
T  20987836 ctgcctaacccccagcccaccaaactcctt 20987865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 235 - 276
Target Start/End: Complemental strand, 33260197 - 33260156
Alignment:
Q  235 cctccaacaccacttccctaacaacgcctcattaaactccct 276  Q
    ||||||||||||||||||||||||||||  ||||||||||||    
T  33260197 cctccaacaccacttccctaacaacgccaaattaaactccct 33260156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 235 - 276
Target Start/End: Complemental strand, 33280356 - 33280315
Alignment:
Q  235 cctccaacaccacttccctaacaacgcctcattaaactccct 276  Q
    ||||||||||||||||||||||||||||  ||||||||||||    
T  33280356 cctccaacaccacttccctaacaacgccaaattaaactccct 33280315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 223 - 282
Target Start/End: Complemental strand, 28097482 - 28097423
Alignment:
Q  223 atcaacaagtaacctccaacaccacttccctaacaacgcctcattaaactccctcaactg 282  Q
    ||||||||| |  |||||||||||||| |||||||| |||| |||||||||| |||||||    
T  28097482 atcaacaagcatactccaacaccactttcctaacaaagcctgattaaactccttcaactg 28097423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 46
Target Start/End: Complemental strand, 30712618 - 30712581
Alignment:
Q  9 ggacatcaccacaccaccgctcatgccaaaacaaagta 46  Q
    |||||||||||||||| || ||||||||||||||||||    
T  30712618 ggacatcaccacaccaacgatcatgccaaaacaaagta 30712581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1809 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold1809
Description:

Target: scaffold1809; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 224 - 322
Target Start/End: Complemental strand, 1314 - 1216
Alignment:
Q  224 tcaacaagtaacctccaacaccacttccctaacaacgcctcattaaactccctcaactgcataactcctaatccaccatactcctttctcatacaaaca 322  Q
    |||||||| || ||||| || ||||| |||||||| ||||| |||||||| || || ||| ||||  | |  |||||||||||||||| ||||||||||    
T  1314 tcaacaagcaatctccatcatcactttcctaacaatgcctcgttaaactctcttaattgcctaacctccagaccaccatactcctttcgcatacaaaca 1216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 221
Target Start/End: Original strand, 67661 - 67702
Alignment:
Q  180 caccatacctagaaaccaacacccgataccataaccctcctc 221  Q
    ||||||||||||||| |||||||| |||||| ||||||||||    
T  67661 caccatacctagaaatcaacaccctataccaaaaccctcctc 67702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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