View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6911_low_2 (Length: 670)
Name: NF6911_low_2
Description: NF6911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6911_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 280; Significance: 1e-156; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 233 - 516
Target Start/End: Original strand, 26462394 - 26462677
Alignment:
| Q |
233 |
gtttgttaagacgggtagggttccaatgccatgggaattgttacaaccagttttgagaatattgggacattgtttgttgggaccaaataacaaggataca |
332 |
Q |
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| T |
26462394 |
gtttgttaagacgggtagggttccaatgccatgggaattgttacaaccagttttgagaatattgggacattgtttgttgggaccaaataacaaggataca |
26462493 |
T |
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| Q |
333 |
atgttgtttgagaaagcaagtgaagcatgtaggtgtttgtttgctagggcaatgcatgatgttaaccctaaagctattttacctatgaggagcttgttga |
432 |
Q |
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| T |
26462494 |
atgttgtttgagaaagcaagtgaagcatgtaggtgtttgtttgctagggcaatgcatgatgttaaccctaaagctattttacctatgaggagcttgttga |
26462593 |
T |
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| Q |
433 |
gactttctaaaaatgttgttgttgatgattttgatccaaccgaaccacccaagactgatgttatcactctttagtactttatgg |
516 |
Q |
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| T |
26462594 |
gactttctaaaaatgttgttgttgatgattttgatccaactgaaccacccaagactgatgttatcactctttagtactttatgg |
26462677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 26462156 - 26462285
Alignment:
| Q |
1 |
acggcactgttcggtcaacacgaagagctcgaatcgtaggcattgcattcgagttgttttacagcaaaatatctgaaatgcctgtttcaccaaaaattga |
100 |
Q |
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| T |
26462156 |
acggcactgttcggtcaacacgaagagctcgaatcgtaggcattgcattcgagttgttttacagcaaaatatctgaaatgcctgtttcaccaaaaattga |
26462255 |
T |
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| Q |
101 |
tttttgtaacttttgtaagatttgggctgg |
130 |
Q |
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| T |
26462256 |
tttttgtaacttttgtaagatttgggctgg |
26462285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 557 - 654
Target Start/End: Original strand, 26462714 - 26462811
Alignment:
| Q |
557 |
cttcattgagaaaataatgtcctagccaacttgaaggagaatctgtgtgatagaggggcactacaagattccaatgaacatttcagcacattatatga |
654 |
Q |
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| T |
26462714 |
cttcattgagaaaataatgtcctagccaacttgaaggagaatctgtgtgatagaggggcactacaagattccaatgaacatttcagcacattatatga |
26462811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 233 - 516
Target Start/End: Complemental strand, 38005413 - 38005130
Alignment:
| Q |
233 |
gtttgttaagacgggtagggttccaatgccatgggaattgttacaaccagttttgagaatattgggacattgtttgttgggaccaaataacaaggataca |
332 |
Q |
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||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| |
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| T |
38005413 |
gtttgttaagagcggtagggttccaatgccatgggaattgttgcaaccagttttgagaatattgggacattgtttgttgggtccaaataacagggataca |
38005314 |
T |
|
| Q |
333 |
atgttgtttgagaaagcaagtgaagcatgtaggtgtttgtttgctagggcaatgcatgatgttaaccctaaagctattttacctatgaggagcttgttga |
432 |
Q |
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| T |
38005313 |
atgttgtttgagaatgcaagtgaagcatgtaggtgtttgtttgctagggcaatgcatgatgttaaccctaaagctattttacctatgaggagcttgttga |
38005214 |
T |
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| Q |
433 |
gactttctaaaaatgttgttgttgatgattttgatccaaccgaaccacccaagactgatgttatcactctttagtactttatgg |
516 |
Q |
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| T |
38005213 |
ggctttctaaaaatgttgatgttgatgattttgatccaactgaaccacctaagactgatgttatcactctttagtactttatgg |
38005130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 38005657 - 38005528
Alignment:
| Q |
1 |
acggcactgttcggtcaacacgaagagctcgaatcgtaggcattgcattcgagttgttttacagcaaaatatctgaaatgcctgtttcaccaaaaattga |
100 |
Q |
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||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||| |||||| || ||||||| ||| ||||||||||||| |
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| T |
38005657 |
acggcactgttcgatcaacacgaagagctcgaatcgtcggcattgcatttgagttgttttacaacaaaatctcgcaaatgccagttgcaccaaaaattga |
38005558 |
T |
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| Q |
101 |
tttttgtaacttttgtaagatttgggctgg |
130 |
Q |
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||||||||| |||||||||||||||||||| |
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| T |
38005557 |
tttttgtaagttttgtaagatttgggctgg |
38005528 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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