View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6911_low_20 (Length: 336)

Name: NF6911_low_20
Description: NF6911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6911_low_20
NF6911_low_20
[»] chr4 (7 HSPs)
chr4 (24-322)||(4122919-4123217)
chr4 (201-322)||(4362452-4362572)
chr4 (211-322)||(4346265-4346376)
chr4 (201-322)||(4336802-4336922)
chr4 (79-171)||(4336662-4336751)
chr4 (213-322)||(4319577-4319686)
chr4 (27-81)||(3746505-3746561)
[»] chr3 (1 HSPs)
chr3 (29-115)||(9233222-9233308)
[»] chr7 (2 HSPs)
chr7 (22-71)||(2087329-2087378)
chr7 (41-87)||(36424688-36424734)
[»] chr5 (3 HSPs)
chr5 (24-90)||(7566378-7566446)
chr5 (40-82)||(12045575-12045617)
chr5 (29-87)||(10515804-10515864)
[»] chr8 (1 HSPs)
chr8 (38-102)||(10659451-10659515)


Alignment Details
Target: chr4 (Bit Score: 271; Significance: 1e-151; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 24 - 322
Target Start/End: Complemental strand, 4123217 - 4122919
Alignment:
Q  24 atttgatatgttggtgatgtgataggaagagagataaagagaaaatgaagtgttaaatgagtgtttggaaaattggggtgtccaaatatcattgttttaa 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4123217 atttgatatgttggtgatgtgataggaagagagataaagagaaaatgaagtgttaaatgagtgtttggaaaattggggtgtccaaatatcattgttttaa 4123118  T
Q  124 tttttactgatcaaaatacgaataattatcttatgaggagtattatatcattgttaaatgattgtgatattagtatttatttccacttttttacagaatt 223  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  4123117 tttttactgatcaaaatacgaataattatcttatgaggagtattatatcattgttaaatgattgtgatattagtgtttatttccacttttttacagaatt 4123018  T
Q  224 tgactgtcgatgggcgtggtagttttttgctcccctgtgataattgcccaaattggttaagtttcaactccaaaggttattctgtagtttttgatgtcc 322  Q
    |||||||||| ||| |||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| ||||    
T  4123017 tgactgtcgacgggggtggtagtgttttgctcccctgtgataattacccaaattggttaagtttcaactccaaaggttattctgttgtttttgaagtcc 4122919  T

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Target: chr4; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 201 - 322
Target Start/End: Original strand, 4362452 - 4362572
Alignment:
Q  201 tatttccacttttttacagaatttgactgtcgatgggcgtggtagttttttgctcccctgtgataattgcccaaattggttaagtttcaactccaaaggt 300  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||  ||||| ||| |||||||||||||||||||||| ||||||||    
T  4362452 tatttccactttt-tacagaatttgactgtcgatgggcgtggtagttttttgctccctggtgatgattacccaaattggttaagtttcaacgccaaaggt 4362550  T
Q  301 tattctgtagtttttgatgtcc 322  Q
    ||||||||| ||||||| ||||    
T  4362551 tattctgtaatttttgaagtcc 4362572  T

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Target: chr4; HSP #3
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 211 - 322
Target Start/End: Original strand, 4346265 - 4346376
Alignment:
Q  211 tttttacagaatttgactgtcgatgggcgtggtagttttttgctcccctgtgataattgcccaaattggttaagtttcaactccaaaggttattctgtag 310  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| || |||||||||||||||||||||||||     
T  4346265 tttttacagaatttgactgtcgatgggcgtggtagttttttgctccccggtgataattacccaaattggtcaactttcaactccaaaggttattctgtaa 4346364  T
Q  311 tttttgatgtcc 322  Q
    | ||||| ||||    
T  4346365 tctttgaagtcc 4346376  T

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Target: chr4; HSP #4
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 201 - 322
Target Start/End: Original strand, 4336802 - 4336922
Alignment:
Q  201 tatttccacttttttacagaatttgactgtcgatgggcgtggtagttttttgctcccctgtgataattgcccaaattggttaagtttcaactccaaaggt 300  Q
    |||||||||||| | ||||||| |||||||||||||| ||||||| |||||||||||| ||||| ||| |||||||||||||  ||||||||| ||||||    
T  4336802 tatttccactttct-acagaatgtgactgtcgatgggtgtggtagctttttgctccccagtgatgattacccaaattggttagctttcaactcgaaaggt 4336900  T
Q  301 tattctgtagtttttgatgtcc 322  Q
    |||||||||  |||||| ||||    
T  4336901 tattctgtaaattttgaagtcc 4336922  T

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Target: chr4; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 79 - 171
Target Start/End: Original strand, 4336662 - 4336751
Alignment:
Q  79 aatgagtgtttggaaaattggggtgtccaaatatcattgttttaatttttactgatcaaaatacgaataattatcttatgaggagtattatat 171  Q
    ||||| ||||| ||||||||||||||||||||||||||||| ||||||||| | ||||||||||   |||||||||| |||||| | ||||||    
T  4336662 aatgattgtttcgaaaattggggtgtccaaatatcattgttgtaatttttatttatcaaaatac---taattatcttttgaggaatgttatat 4336751  T

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Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 213 - 322
Target Start/End: Complemental strand, 4319686 - 4319577
Alignment:
Q  213 tttacagaatttgactgtcgatgggcgtggtagttttttgctcccctgtgataattgcccaaattggttaagtttcaactccaaaggttattctgtagtt 312  Q
    |||||||||||||||| |||||| || |||| ||||||  ||||| |||||||||| |||  ||||||||  |||||| ||  |||||| ||||||| ||    
T  4319686 tttacagaatttgactatcgatgagcatggtcgtttttcactcccttgtgataattacccggattggttagctttcaattcagaaggttcttctgtaatt 4319587  T
Q  313 tttgatgtcc 322  Q
    ||||| ||||    
T  4319586 tttgaagtcc 4319577  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 81
Target Start/End: Complemental strand, 3746561 - 3746505
Alignment:
Q  27 tgatatgttggtgatgtgataggaaga--gagataaagagaaaatgaagtgttaaat 81  Q
    ||||| ||||||||| ||||| |||||  |||||| |||||||||||||||||||||    
T  3746561 tgataggttggtgatatgataagaagatagagatagagagaaaatgaagtgttaaat 3746505  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 29 - 115
Target Start/End: Complemental strand, 9233308 - 9233222
Alignment:
Q  29 atatgttggtgatgtgataggaagagagataaagagaaaatgaagtgttaaatgagtgtttggaaaattggggtgtccaaatatcat 115  Q
    |||||||| |||||||||| |||||||||| |||| ||||||||||||| ||||||||| || ||| || ||||||  |||||||||    
T  9233308 atatgttgatgatgtgataagaagagagatgaagataaaatgaagtgttgaatgagtgtatgtaaagttagggtgttaaaatatcat 9233222  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 22 - 71
Target Start/End: Complemental strand, 2087378 - 2087329
Alignment:
Q  22 aaatttgatatgttggtgatgtgataggaagagagataaagagaaaatga 71  Q
    |||| |||||| ||| | ||||||||||||||||||||||||||||||||    
T  2087378 aaatgtgatatattgttaatgtgataggaagagagataaagagaaaatga 2087329  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 41 - 87
Target Start/End: Original strand, 36424688 - 36424734
Alignment:
Q  41 tgtgataggaagagagataaagagaaaatgaagtgttaaatgagtgt 87  Q
    ||||||||||||||| ||||||||||||| || |||||||| |||||    
T  36424688 tgtgataggaagagaaataaagagaaaataaaatgttaaataagtgt 36424734  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 24 - 90
Target Start/End: Original strand, 7566378 - 7566446
Alignment:
Q  24 atttgatatgttggtgatgtgataggaagagaga--taaagagaaaatgaagtgttaaatgagtgtttg 90  Q
    |||||||| |||| |||| |||||||||||||||  || ||||||||||||||||||||| | ||||||    
T  7566378 atttgataggttgatgatatgataggaagagagagatagagagaaaatgaagtgttaaataaatgtttg 7566446  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 82
Target Start/End: Original strand, 12045575 - 12045617
Alignment:
Q  40 atgtgataggaagagagataaagagaaaatgaagtgttaaatg 82  Q
    |||||||||||||||||||| |||||||||||| |||| ||||    
T  12045575 atgtgataggaagagagatatagagaaaatgaattgttgaatg 12045617  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 87
Target Start/End: Original strand, 10515804 - 10515864
Alignment:
Q  29 atatgttggtgatgtgataggaagaga--gataaagagaaaatgaagtgttaaatgagtgt 87  Q
    |||| ||| ||||||||||||||||||  ||||||||||||||||| |||| || ||||||    
T  10515804 atatattgatgatgtgataggaagagatagataaagagaaaatgaaatgttgaacgagtgt 10515864  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 38 - 102
Target Start/End: Complemental strand, 10659515 - 10659451
Alignment:
Q  38 tgatgtgataggaagagagataaagagaaaatgaagtgttaaatgagtgtttggaaaattggggt 102  Q
    |||||| |||| || |||||||||||  |||||| ||||| ||||| |||| |||||||||||||    
T  10659515 tgatgtaatagaaaaagagataaagattaaatgatgtgttgaatgaatgttaggaaaattggggt 10659451  T

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