View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6911_low_21 (Length: 321)

Name: NF6911_low_21
Description: NF6911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6911_low_21
NF6911_low_21
[»] chr7 (8 HSPs)
chr7 (1-175)||(19216904-19217078)
chr7 (1-173)||(41256156-41256328)
chr7 (183-315)||(19217144-19217276)
chr7 (188-316)||(41255955-41256083)
chr7 (1-175)||(15891761-15891923)
chr7 (183-316)||(15891989-15892122)
chr7 (215-285)||(25010997-25011067)
chr7 (91-171)||(25011169-25011249)
[»] chr1 (8 HSPs)
chr1 (1-175)||(50516665-50516837)
chr1 (1-175)||(33803096-33803270)
chr1 (1-175)||(44711783-44711957)
chr1 (183-316)||(50516905-50517038)
chr1 (183-316)||(33803336-33803469)
chr1 (183-316)||(44711584-44711717)
chr1 (183-315)||(45909343-45909475)
chr1 (214-293)||(10549314-10549393)
[»] chr2 (13 HSPs)
chr2 (2-175)||(17311190-17311363)
chr2 (1-175)||(30213253-30213427)
chr2 (1-175)||(38621252-38621426)
chr2 (1-175)||(23937670-23937844)
chr2 (183-316)||(30213493-30213626)
chr2 (183-315)||(29809921-29810053)
chr2 (188-316)||(17310991-17311119)
chr2 (184-316)||(38621493-38621625)
chr2 (1-94)||(29809720-29809813)
chr2 (183-293)||(10925749-10925859)
chr2 (183-276)||(23937510-23937603)
chr2 (32-163)||(10925540-10925671)
chr2 (136-175)||(29809816-29809855)
[»] chr8 (7 HSPs)
chr8 (1-175)||(9139253-9139427)
chr8 (13-175)||(23254524-23254686)
chr8 (1-175)||(755424-755598)
chr8 (1-175)||(23709217-23709392)
chr8 (183-316)||(9139054-9139187)
chr8 (183-313)||(23254752-23254882)
chr8 (183-316)||(755664-755791)
[»] chr5 (8 HSPs)
chr5 (1-175)||(20235344-20235518)
chr5 (1-175)||(34832613-34832787)
chr5 (183-316)||(20235145-20235278)
chr5 (194-316)||(25761720-25761842)
chr5 (188-315)||(34832415-34832542)
chr5 (183-309)||(38966535-38966661)
chr5 (32-174)||(31049121-31049263)
chr5 (32-174)||(31044466-31044608)
[»] chr3 (4 HSPs)
chr3 (1-175)||(52971133-52971307)
chr3 (1-172)||(6160744-6160915)
chr3 (183-316)||(52970934-52971067)
chr3 (224-315)||(48094747-48094838)
[»] chr6 (1 HSPs)
chr6 (53-157)||(24131885-24131989)


Alignment Details
Target: chr7 (Bit Score: 143; Significance: 4e-75; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 1 - 175
Target Start/End: Original strand, 19216904 - 19217078
Alignment:
Q  1 gcaagaatgggtaagcgattaagcctgcttcggtggtgaagactgtgatggctgcatgggtggatattgtggactccgaaacggaggaatcatatattga 100  Q
    ||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| |||||    
T  19216904 gcaagaatgggaaagcgattaagcctggttcggtggtgaagactgtgatggctgcatggatggatattgtggactccgaaacggaggaagcatacattga 19217003  T
Q  101 tagttggacccggttcaaagttctatgcgcaaaatttcccaagtttttggaatatgtttaaaagacaattttgga 175  Q
    || ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  19217004 taattggacccgattcaaagttctatgcgcaaaatttcccaagtttttggaatatgttgaaaagacaattttgga 19217078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 173
Target Start/End: Complemental strand, 41256328 - 41256156
Alignment:
Q  1 gcaagaatgggtaagcgattaagcctgcttcggtggtgaagactgtgatggctgcatgggtggatattgtggactccgaaacggaggaatcatatattga 100  Q
    ||||||||||| |||||||||||||||| ||||||||||| | |||||||||||||||| || |||||||||||||||| ||||||||| ||||||||||    
T  41256328 gcaagaatgggcaagcgattaagcctgcgtcggtggtgaaaattgtgatggctgcatggatgtatattgtggactccgacacggaggaaacatatattga 41256229  T
Q  101 tagttggacccggttcaaagttctatgcgcaaaatttcccaagtttttggaatatgtttaaaagacaattttg 173  Q
    || |||||||||||| ||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||    
T  41256228 taattggacccggtttaaagttctatgcgcaaaattttccaagtttttggaatatgttgaaaagacaattttg 41256156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 183 - 315
Target Start/End: Original strand, 19217144 - 19217276
Alignment:
Q  183 caaacagagctgaatctgcacacgctcagtcgaaaaagtatctgagtagtagcatgggtcatttgagtacaaactgccaatccgttcataacatgctaga 282  Q
    ||||||||| |||||||||||||| || || |||||||||| |||||||||| |||||| |||||||||||||||| |||||||||||||||||||||||    
T  19217144 caaacagagttgaatctgcacacgttcggttgaaaaagtatttgagtagtagtatgggtgatttgagtacaaactggcaatccgttcataacatgctaga 19217243  T
Q  283 gttgcaacatattgcaatacatgcttcatttca 315  Q
    |||||||||||  |||||| |||||||||||||    
T  19217244 gttgcaacataccgcaataaatgcttcatttca 19217276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 188 - 316
Target Start/End: Complemental strand, 41256083 - 41255955
Alignment:
Q  188 agagctgaatctgcacacgctcagtcgaaaaagtatctgagtagtagcatgggtcatttgagtacaaactgccaatccgttcataacatgctagagttgc 287  Q
    |||||||||||||||||||||  ||  |||||||| ||||||||||| |||||| |||||||||||||||| ||||||||| ||||||||||||||||||    
T  41256083 agagctgaatctgcacacgcttcgtttaaaaagtacctgagtagtagtatgggtgatttgagtacaaactggcaatccgttaataacatgctagagttgc 41255984  T
Q  288 aacatattgcaatacatgcttcatttcag 316  Q
    ||||||  |||||||||||||||||||||    
T  41255983 aacataccgcaatacatgcttcatttcag 41255955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 1 - 175
Target Start/End: Original strand, 15891761 - 15891923
Alignment:
Q  1 gcaagaatgggtaagcgattaagcctgcttcggtggtgaagactgtgatggctgcatgggtggatattgtggactccgaaacggaggaatcatatattga 100  Q
    ||||||||||| ||||||| |||||||||| ||| ||||||||||||||||            |||||||| ||| ||||| ||||||| | ||||||||    
T  15891761 gcaagaatggggaagcgatcaagcctgctttggttgtgaagactgtgatgg------------atattgtgcacttcgaaatggaggaagcgtatattga 15891848  T
Q  101 tagttggacccggttcaaagttctatgcgcaaaatttcccaagtttttggaatatgtttaaaagacaattttgga 175  Q
    || ||||||||||||||||||| ||||||||||||| || ||||||||||| |||||| ||||||||||||||||    
T  15891849 taattggacccggttcaaagttgtatgcgcaaaattccctaagtttttggattatgttgaaaagacaattttgga 15891923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 183 - 316
Target Start/End: Original strand, 15891989 - 15892122
Alignment:
Q  183 caaacagagctgaatctgcacacgctcagtcgaaaaagtatctgagtagtagcatgggtcatttgagtacaaactgccaatccgttcataacatgctaga 282  Q
    ||||||||  ||||||| ||||||||  || ||||||||||||||||||||| |||||| |||| |||||||||||  ||||||||||| | ||||||||    
T  15891989 caaacagaattgaatctacacacgctaggttgaaaaagtatctgagtagtagtatgggtgatttaagtacaaactggaaatccgttcatgagatgctaga 15892088  T
Q  283 gttgcaacatattgcaatacatgcttcatttcag 316  Q
    |||||||||||  |||||||||||||| ||||||    
T  15892089 gttgcaacataccgcaatacatgcttcgtttcag 15892122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 215 - 285
Target Start/End: Complemental strand, 25011067 - 25010997
Alignment:
Q  215 aaaaagtatctgagtagtagcatgggtcatttgagtacaaactgccaatccgttcataacatgctagagtt 285  Q
    ||||||||||||| |||||| ||| || |||| |||||||||||  |||| ||||| |||||| |||||||    
T  25011067 aaaaagtatctgattagtagtatgagtaatttaagtacaaactggaaatctgttcacaacatgttagagtt 25010997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 91 - 171
Target Start/End: Complemental strand, 25011249 - 25011169
Alignment:
Q  91 catatattgatagttggacccggttcaaagttctatgcgcaaaatttcccaagtttttggaatatgtttaaaagacaattt 171  Q
    |||||||||||| ||| | ||||||||||| | ||||||  || ||||| | |||||||||||||||| |||  |||||||    
T  25011249 catatattgataattgcaaccggttcaaagctgtatgcgacaagtttcctatgtttttggaatatgttgaaactacaattt 25011169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 136; Significance: 6e-71; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 1 - 175
Target Start/End: Original strand, 50516665 - 50516837
Alignment:
Q  1 gcaagaatgggtaagcgattaagcctgcttcggtggtgaagactgtgatggctgcatgggtggatattgtggactccgaaacggaggaatcatatattga 100  Q
    ||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| |||||||  |    
T  50516665 gcaagaatgggcaagcgattaagcctgcgtcggtggtgaagactgtgatggctgcatggatggatattgtggactccgacacggaggaagcatatat--a 50516762  T
Q  101 tagttggacccggttcaaagttctatgcgcaaaatttcccaagtttttggaatatgtttaaaagacaattttgga 175  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  50516763 taattggacccggttcaaagttctatgcgcaaaatttcccaagtttttggaatatgttgaaaagacaattttgga 50516837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 1 - 175
Target Start/End: Original strand, 33803096 - 33803270
Alignment:
Q  1 gcaagaatgggtaagcgattaagcctgcttcggtggtgaagactgtgatggctgcatgggtggatattgtggactccgaaacggaggaatcatatattga 100  Q
    ||||||||||| ||||||||||||||| |||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| |||| |||||    
T  33803096 gcaagaatgggcaagcgattaagcctggttcggtggtgaagattgtgatggctgcatggatggatattgtggactccgaaacggaggaagcatacattga 33803195  T
Q  101 tagttggacccggttcaaagttctatgcgcaaaatttcccaagtttttggaatatgtttaaaagacaattttgga 175  Q
    || ||||||||||||||||||||||||| |||||||| |||| ||||||||||||||| ||||||||||||||||    
T  33803196 taattggacccggttcaaagttctatgcacaaaattttccaaatttttggaatatgttgaaaagacaattttgga 33803270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 175
Target Start/End: Complemental strand, 44711957 - 44711783
Alignment:
Q  1 gcaagaatgggtaagcgattaagcctgcttcggtggtgaagactgtgatggctgcatgggtggatattgtggactccgaaacggaggaatcatatattga 100  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||| ||||||||| ||||||||||    
T  44711957 gcaagaatgggcaagcgattaagcctgcttcggtggtgaagactgtgatggctgcatggacggatattgtggactccgacacggaggaagcatatattga 44711858  T
Q  101 tagttggacccggttcaaagttctatgcgcaaaatttcccaagtttttggaatatgtttaaaagacaattttgga 175  Q
    || ||||||||| ||||||||||||| |||||||||| || | ||||||||||||||| ||||||||||||||||    
T  44711857 taattggacccgattcaaagttctatacgcaaaatttacctaatttttggaatatgttgaaaagacaattttgga 44711783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 183 - 316
Target Start/End: Original strand, 50516905 - 50517038
Alignment:
Q  183 caaacagagctgaatctgcacacgctcagtcgaaaaagtatctgagtagtagcatgggtcatttgagtacaaactgccaatccgttcataacatgctaga 282  Q
    |||||| ||||||||||||||||| || || ||||||||| ||||||||||| |||||| |||||||||||||||| |||||||||||||||||||||||    
T  50516905 caaacatagctgaatctgcacacgatcggttgaaaaagtacctgagtagtagtatgggtgatttgagtacaaactggcaatccgttcataacatgctaga 50517004  T
Q  283 gttgcaacatattgcaatacatgcttcatttcag 316  Q
    |||||||||||  |||||||||||||||||||||    
T  50517005 gttgcaacataccgcaatacatgcttcatttcag 50517038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 183 - 316
Target Start/End: Original strand, 33803336 - 33803469
Alignment:
Q  183 caaacagagctgaatctgcacacgctcagtcgaaaaagtatctgagtagtagcatgggtcatttgagtacaaactgccaatccgttcataacatgctaga 282  Q
    ||||||||||||||||||| ||||||| || |||||||| | |||||||||| |||||| ||||||||| ||||||  |||| |||||||||||||||||    
T  33803336 caaacagagctgaatctgcgcacgctcggttgaaaaagtgtttgagtagtagtatgggtgatttgagtaaaaactggaaatctgttcataacatgctaga 33803435  T
Q  283 gttgcaacatattgcaatacatgcttcatttcag 316  Q
    |||||||||||  |||||||||||||||||||||    
T  33803436 gttgcaacataccgcaatacatgcttcatttcag 33803469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 183 - 316
Target Start/End: Complemental strand, 44711717 - 44711584
Alignment:
Q  183 caaacagagctgaatctgcacacgctcagtcgaaaaagtatctgagtagtagcatgggtcatttgagtacaaactgccaatccgttcataacatgctaga 282  Q
    |||||| || ||||||||||| ||||| || ||||||||| ||||||||||| |||||| |||||||||||||||| ||||||||| |||||||||||||    
T  44711717 caaacaaagttgaatctgcactcgctcggttgaaaaagtacctgagtagtagtatgggtaatttgagtacaaactggcaatccgttaataacatgctaga 44711618  T
Q  283 gttgcaacatattgcaatacatgcttcatttcag 316  Q
    |||||||||||   ||||||||||||||||||||    
T  44711617 gttgcaacataccacaatacatgcttcatttcag 44711584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 183 - 315
Target Start/End: Complemental strand, 45909475 - 45909343
Alignment:
Q  183 caaacagagctgaatctgcacacgctcagtcgaaaaagtatctgagtagtagcatgggtcatttgagtacaaactgccaatccgttcataacatgctaga 282  Q
    ||||||||||||||||||||||||||| || ||||| ||| ||||||||||| |||||| |||||||||||||||| ||||| ||| |||||||||||||    
T  45909475 caaacagagctgaatctgcacacgctcggttgaaaaggtacctgagtagtagtatgggtgatttgagtacaaactggcaatctgttaataacatgctaga 45909376  T
Q  283 gttgcaacatattgcaatacatgcttcatttca 315  Q
    |||||||||||  ||| |||||| |||||||||    
T  45909375 gttgcaacataccgcagtacatgtttcatttca 45909343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 214 - 293
Target Start/End: Original strand, 10549314 - 10549393
Alignment:
Q  214 gaaaaagtatctgagtagtagcatgggtcatttgagtacaaactgccaatccgttcataacatgctagagttgcaacata 293  Q
    ||||||| |||||| |||||| ||| || |||| |||||||||||  |||||||||| |||||||||||| | |||||||    
T  10549314 gaaaaagcatctgactagtagtatgagtgatttaagtacaaactgggaatccgttcacaacatgctagagctacaacata 10549393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 134; Significance: 1e-69; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 2 - 175
Target Start/End: Complemental strand, 17311363 - 17311190
Alignment:
Q  2 caagaatgggtaagcgattaagcctgcttcggtggtgaagactgtgatggctgcatgggtggatattgtggactccgaaacggaggaatcatatattgat 101  Q
    ||||||| || ||||||||||||||| ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| |||| ||||||    
T  17311363 caagaattggcaagcgattaagcctggttcggtggtgaagactgtgatggatgcatggatggatattgtggactccgaaacggaggaagcatacattgat 17311264  T
Q  102 agttggacccggttcaaagttctatgcgcaaaatttcccaagtttttggaatatgtttaaaagacaattttgga 175  Q
    | ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  17311263 aattggaaccggttcaaagttctatgcgcaaaatttcccaagtttttggaatatgttgaaaagacaattttgga 17311190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 175
Target Start/End: Original strand, 30213253 - 30213427
Alignment:
Q  1 gcaagaatgggtaagcgattaagcctgcttcggtggtgaagactgtgatggctgcatgggtggatattgtggactccgaaacggaggaatcatatattga 100  Q
    ||||||||||| |||||||||||||||| ||||||||||||||| |||||||||||||| |||||| |||||||||| | ||| ||||| ||||||||||    
T  30213253 gcaagaatgggcaagcgattaagcctgcgtcggtggtgaagactatgatggctgcatggatggatactgtggactccaacacgtaggaagcatatattga 30213352  T
Q  101 tagttggacccggttcaaagttctatgcgcaaaatttcccaagtttttggaatatgtttaaaagacaattttgga 175  Q
    || |||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||    
T  30213353 taattggacccggttcaaagttctatgcgcaaaatttcccatgtttttggaatatgttgaaaagacaattttgga 30213427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 175
Target Start/End: Original strand, 38621252 - 38621426
Alignment:
Q  1 gcaagaatgggtaagcgattaagcctgcttcggtggtgaagactgtgatggctgcatgggtggatattgtggactccgaaacggaggaatcatatattga 100  Q
    ||||||||||| |||||||||||| ||| |||||||||||||||||||||||||||||| ||||||||||||||||||| |  |||||| ||||||||||    
T  38621252 gcaagaatgggcaagcgattaagcatgcgtcggtggtgaagactgtgatggctgcatggatggatattgtggactccgacatagaggaagcatatattga 38621351  T
Q  101 tagttggacccggttcaaagttctatgcgcaaaatttcccaagtttttggaatatgtttaaaagacaattttgga 175  Q
    || |||||||||||||||||||||||||||||||||||||||||| | |||||||||| ||||||||||||||||    
T  38621352 taattggacccggttcaaagttctatgcgcaaaatttcccaagttataggaatatgttgaaaagacaattttgga 38621426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 175
Target Start/End: Complemental strand, 23937844 - 23937670
Alignment:
Q  1 gcaagaatgggtaagcgattaagcctgcttcggtggtgaagactgtgatggctgcatgggtggatattgtggactccgaaacggaggaatcatatattga 100  Q
    ||||||| ||| ||||||| |||||||||| ||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||    
T  23937844 gcaagaagggggaagcgatcaagcctgctttggtggtgaagattgtgatggctgcatggttggatattgtggactccgaaacggaggaagcatatattga 23937745  T
Q  101 tagttggacccggttcaaagttctatgcgcaaaatttcccaagtttttggaatatgtttaaaagacaattttgga 175  Q
    || |||||||| |||||||||| |||||||||||||| | | ||||||||| |||||| ||||||||||||||||    
T  23937744 taattggacccagttcaaagttgtatgcgcaaaattttctatgtttttggattatgttgaaaagacaattttgga 23937670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 183 - 316
Target Start/End: Original strand, 30213493 - 30213626
Alignment:
Q  183 caaacagagctgaatctgcacacgctcagtcgaaaaagtatctgagtagtagcatgggtcatttgagtacaaactgccaatccgttcataacatgctaga 282  Q
    ||||||||||||||||||||||||||| || ||||||||| ||||||||||| |||||| |||||||||||||||| ||||| |||||||||||| ||||    
T  30213493 caaacagagctgaatctgcacacgctcggttgaaaaagtacctgagtagtagtatgggtgatttgagtacaaactggcaatctgttcataacatggtaga 30213592  T
Q  283 gttgcaacatattgcaatacatgcttcatttcag 316  Q
    ||||||||||| ||||||||||||||||||||||    
T  30213593 gttgcaacatactgcaatacatgcttcatttcag 30213626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 183 - 315
Target Start/End: Original strand, 29809921 - 29810053
Alignment:
Q  183 caaacagagctgaatctgcacacgctcagtcgaaaaagtatctgagtagtagcatgggtcatttgagtacaaactgccaatccgttcataacatgctaga 282  Q
    ||||||||||||||||||||||||||| || |||||||||| |||||||||| |||||||||||||||||||||||  |||||||||||||||||||| |    
T  29809921 caaacagagctgaatctgcacacgctctgttgaaaaagtatttgagtagtagtatgggtcatttgagtacaaactggaaatccgttcataacatgctaaa 29810020  T
Q  283 gttgcaacatattgcaatacatgcttcatttca 315  Q
    |||||||||||  |||||||||| |||||||||    
T  29810021 gttgcaacataccgcaatacatgattcatttca 29810053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 188 - 316
Target Start/End: Complemental strand, 17311119 - 17310991
Alignment:
Q  188 agagctgaatctgcacacgctcagtcgaaaaagtatctgagtagtagcatgggtcatttgagtacaaactgccaatccgttcataacatgctagagttgc 287  Q
    |||||||||||||||||||||| || |||||||||| |||||||||| |||||| |||||||||||||||  ||||||||||||||||| ||||||||||    
T  17311119 agagctgaatctgcacacgctcggttgaaaaagtatttgagtagtagtatgggtgatttgagtacaaactagcaatccgttcataacattctagagttgc 17311020  T
Q  288 aacatattgcaatacatgcttcatttcag 316  Q
    ||||||  |||||||||||||||||||||    
T  17311019 aacataccgcaatacatgcttcatttcag 17310991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 184 - 316
Target Start/End: Original strand, 38621493 - 38621625
Alignment:
Q  184 aaacagagctgaatctgcacacgctcagtcgaaaaagtatctgagtagtagcatgggtcatttgagtacaaactgccaatccgttcataacatgctagag 283  Q
    |||||||||||||||||||||| ||| || || |||||| ||||||||||| |||||| |||||||||||||||| ||||||||||||||||||||||||    
T  38621493 aaacagagctgaatctgcacacactcggttgagaaagtacctgagtagtagtatgggtgatttgagtacaaactggcaatccgttcataacatgctagag 38621592  T
Q  284 ttgcaacatattgcaatacatgcttcatttcag 316  Q
    ||||||||||  |||||| ||||||||||||||    
T  38621593 ttgcaacataccgcaataaatgcttcatttcag 38621625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 29809720 - 29809813
Alignment:
Q  1 gcaagaatgggtaagcgattaagcctgcttcggtggtgaagactgtgatggctgcatgggtggatattgtggactccgaaacggaggaatcata 94  Q
    |||| |||||| ||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  29809720 gcaaaaatgggaaagcgattaagcctggttcggtggtgaagattgtgatggctgcatgggtggatattgtggactccgaaacggaggaagcata 29809813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 183 - 293
Target Start/End: Original strand, 10925749 - 10925859
Alignment:
Q  183 caaacagagctgaatctgcacacgctcagtcgaaaaagtatctgagtagtagcatgggtcatttgagtacaaactgccaatccgttcataacatgctaga 282  Q
    ||||||||||| ||||||||||    | ||||||||||||||||  ||||||  ||||| |||| |||||||||||  | |||||||| |||||||||||    
T  10925749 caaacagagctaaatctgcacataaccggtcgaaaaagtatctggctagtagtgtgggtgatttaagtacaaactggaactccgttcacaacatgctaga 10925848  T
Q  283 gttgcaacata 293  Q
    ||  |||||||    
T  10925849 gtcacaacata 10925859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 183 - 276
Target Start/End: Complemental strand, 23937603 - 23937510
Alignment:
Q  183 caaacagagctgaatctgcacacgctcagtcgaaaaagtatctgagtagtagcatgggtcatttgagtacaaactgccaatccgttcataacat 276  Q
    |||||||||  |||||||||||| ||| || |||||||||||||| |||||| |||| | || | ||||||||||| |||||| ||||| ||||    
T  23937603 caaacagagtcgaatctgcacacactcggttgaaaaagtatctgaatagtagtatggatgatctaagtacaaactgacaatccattcatgacat 23937510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 32 - 163
Target Start/End: Original strand, 10925540 - 10925671
Alignment:
Q  32 ggtggtgaagactgtgatggctgcatgggtggatattgtggactccgaaacggaggaatcatatattgatagttggacccggttcaaagttctatgcgca 131  Q
    |||||||||||| ||| ||| |||||||| |||||| ||| | ||||| ||  || || ||||| |||||| ||| | ||  ||||||||| |||||       
T  10925540 ggtggtgaagacggtggtggttgcatgggaggatatcgtgaattccgatacatagcaaccatatgttgataattgcaacctattcaaagttgtatgcaac 10925639  T
Q  132 aaatttcccaagtttttggaatatgtttaaaa 163  Q
    |||||||| |||||||||||||||||| ||||    
T  10925640 aaatttcctaagtttttggaatatgttgaaaa 10925671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 136 - 175
Target Start/End: Original strand, 29809816 - 29809855
Alignment:
Q  136 ttcccaagtttttggaatatgtttaaaagacaattttgga 175  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  29809816 ttcccaagtttttggaatatgttgaaaagacaattttgga 29809855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 131; Significance: 6e-68; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 1 - 175
Target Start/End: Complemental strand, 9139427 - 9139253
Alignment:
Q  1 gcaagaatgggtaagcgattaagcctgcttcggtggtgaagactgtgatggctgcatgggtggatattgtggactccgaaacggaggaatcatatattga 100  Q
    ||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |||| |||||    
T  9139427 gcaagaatgggaaagcgattaagcctggttcggtggtgaagactgtgatggctgcatggatagatattgtggactccgaaacggaggaagcatacattga 9139328  T
Q  101 tagttggacccggttcaaagttctatgcgcaaaatttcccaagtttttggaatatgtttaaaagacaattttgga 175  Q
    |  |||||| ||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||    
T  9139327 tgattggactcggttcaaagttctatgcgcaaaattttccaagtttttggaatatgttgaaaagacaattttgga 9139253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 13 - 175
Target Start/End: Original strand, 23254524 - 23254686
Alignment:
Q  13 aagcgattaagcctgcttcggtggtgaagactgtgatggctgcatgggtggatattgtggactccgaaacggaggaatcatatattgatagttggacccg 112  Q
    ||||||||||||||| |||||||||||||||||||| |||||||||| ||||||||||||||||||||| ||||||| |||| ||||||| |||||||||    
T  23254524 aagcgattaagcctggttcggtggtgaagactgtgacggctgcatggatggatattgtggactccgaaaaggaggaagcatacattgataattggacccg 23254623  T
Q  113 gttcaaagttctatgcgcaaaatttcccaagtttttggaatatgtttaaaagacaattttgga 175  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||    
T  23254624 gttcaaagttctatgcgcaaaatttcccaagtttttggaatatgttgaaaagataattttgga 23254686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 175
Target Start/End: Original strand, 755424 - 755598
Alignment:
Q  1 gcaagaatgggtaagcgattaagcctgcttcggtggtgaagactgtgatggctgcatgggtggatattgtggactccgaaacggaggaatcatatattga 100  Q
    |||| |||||| || ||||||||||||||||||||||||| | |||||||||||  ||| ||||||||||||||||||||||||||||| ||||||||||    
T  755424 gcaataatggggaatcgattaagcctgcttcggtggtgaaaattgtgatggctgtctggttggatattgtggactccgaaacggaggaagcatatattga 755523  T
Q  101 tagttggacccggttcaaagttctatgcgcaaaatttcccaagtttttggaatatgtttaaaagacaattttgga 175  Q
    || |||||| |||||||||| | |||||||||||||||| |||||| |||| |||||| ||||||||||||||||    
T  755524 taattggactcggttcaaagatgtatgcgcaaaatttcctaagtttctggattatgttgaaaagacaattttgga 755598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 1 - 175
Target Start/End: Complemental strand, 23709392 - 23709217
Alignment:
Q  1 gcaagaatgggtaagcgattaagcctgcttcggtgg-tgaagactgtgatggctgcatgggtggatattgtggactccgaaacggaggaatcatatattg 99  Q
    ||||||||||| ||||||| |||||||| || |||| ||||||||||||||||||||||| ||||||||| ||| ||||||||||||||| |||||||||    
T  23709392 gcaagaatggggaagcgatcaagcctgcctctgtgggtgaagactgtgatggctgcatggatggatattgaggagtccgaaacggaggaagcatatattg 23709293  T
Q  100 atagttggacccggttcaaagttctatgcgcaaaatttcccaagtttttggaatatgtttaaaagacaattttgga 175  Q
    ||| ||||||    ||||||||| ||||||  |||||||| ||||||||||| ||| || |||||||||| |||||    
T  23709292 ataattggacaaaattcaaagttgtatgcgggaaatttcctaagtttttggattattttgaaaagacaatgttgga 23709217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 183 - 316
Target Start/End: Complemental strand, 9139187 - 9139054
Alignment:
Q  183 caaacagagctgaatctgcacacgctcagtcgaaaaagtatctgagtagtagcatgggtcatttgagtacaaactgccaatccgttcataacatgctaga 282  Q
    ||||||||| ||||| |||||||||||  | |||||||||| |||||||||| ||| || |||||||||||||||| ||||| |||||||||||||||||    
T  9139187 caaacagagttgaatgtgcacacgctcgattgaaaaagtatttgagtagtagtatgagtgatttgagtacaaactggcaatctgttcataacatgctaga 9139088  T
Q  283 gttgcaacatattgcaatacatgcttcatttcag 316  Q
    |||||||||||  |||||||||| ||||||||||    
T  9139087 gttgcaacataccgcaatacatgtttcatttcag 9139054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 183 - 313
Target Start/End: Original strand, 23254752 - 23254882
Alignment:
Q  183 caaacagagctgaatctgcacacgctcagtcgaaaaagtatctgagtagtagcatgggtcatttgagtacaaactgccaatccgttcataacatgctaga 282  Q
    |||||||||||||||||| | ||||||  | || ||||||| |||||||||| || | | |||||||||||||||| |||||||||||||||||||||||    
T  23254752 caaacagagctgaatctgtagacgctcgattgagaaagtatttgagtagtagtatagatgatttgagtacaaactggcaatccgttcataacatgctaga 23254851  T
Q  283 gttgcaacatattgcaatacatgcttcattt 313  Q
    |||||| ||||  |||| |||||||||||||    
T  23254852 gttgcatcataccgcaaaacatgcttcattt 23254882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 183 - 316
Target Start/End: Original strand, 755664 - 755791
Alignment:
Q  183 caaacagagctgaatctgcacacgctcagtcgaaaaagtatctgagtagtagcatgggtcatttgagtacaaactgccaatccgttcataacatgctaga 282  Q
    |||| |||||||||||||||||||||| || ||||||||| || ||||      ||||| ||||||||||||||||| ||||||||||| |||||||| |    
T  755664 caaatagagctgaatctgcacacgctcggttgaaaaagtacctaagta------tgggttatttgagtacaaactgcaaatccgttcatgacatgctata 755757  T
Q  283 gttgcaacatattgcaatacatgcttcatttcag 316  Q
    |||||||||||  | |||||||||||| ||||||    
T  755758 gttgcaacataccgtaatacatgcttcgtttcag 755791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 131; Significance: 6e-68; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 1 - 175
Target Start/End: Complemental strand, 20235518 - 20235344
Alignment:
Q  1 gcaagaatgggtaagcgattaagcctgcttcggtggtgaagactgtgatggctgcatgggtggatattgtggactccgaaacggaggaatcatatattga 100  Q
    ||||||||||| ||||||||||||||| ||| |||||||||||||| |||||||||||| |||||||||||||||||||||||||| || |||| |||||    
T  20235518 gcaagaatgggcaagcgattaagcctggttcagtggtgaagactgtcatggctgcatggatggatattgtggactccgaaacggagaaagcatacattga 20235419  T
Q  101 tagttggacccggttcaaagttctatgcgcaaaatttcccaagtttttggaatatgtttaaaagacaattttgga 175  Q
    || ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||    
T  20235418 taattggacccggttcaaagttctatacgcaaaatttcccaagtttttggaatatgttgaaaagacaattttgga 20235344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 1 - 175
Target Start/End: Complemental strand, 34832787 - 34832613
Alignment:
Q  1 gcaagaatgggtaagcgattaagcctgcttcggtggtgaagactgtgatggctgcatgggtggatattgtggactccgaaacggaggaatcatatattga 100  Q
    ||||||||||  |||| ||||||| ||| ||||||||| |||||||||||||||||||| ||||||||||||||||||| || |||||| ||||||||||    
T  34832787 gcaagaatggacaagcaattaagcatgcgtcggtggtgtagactgtgatggctgcatggatggatattgtggactccgacacagaggaaacatatattga 34832688  T
Q  101 tagttggacccggttcaaagttctatgcgcaaaatttcccaagtttttggaatatgtttaaaagacaattttgga 175  Q
    || ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| |||||||||    
T  34832687 taattggacccggttcaaagttctatgcgcaaaatttcccgagtttttggaatatgttgaaaagaaaattttgga 34832613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 183 - 316
Target Start/End: Complemental strand, 20235278 - 20235145
Alignment:
Q  183 caaacagagctgaatctgcacacgctcagtcgaaaaagtatctgagtagtagcatgggtcatttgagtacaaactgccaatccgttcataacatgctaga 282  Q
    |||||||||||||||||||||||||||||| |||||||||  |||||||||  |||||| |||||||||||||||| ||||||||||||||||| |||||    
T  20235278 caaacagagctgaatctgcacacgctcagttgaaaaagtaattgagtagtaatatgggtgatttgagtacaaactggcaatccgttcataacatactaga 20235179  T
Q  283 gttgcaacatattgcaatacatgcttcatttcag 316  Q
    |||| ||||||  |||||||||||||||||||||    
T  20235178 gttgaaacataccgcaatacatgcttcatttcag 20235145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 194 - 316
Target Start/End: Original strand, 25761720 - 25761842
Alignment:
Q  194 gaatctgcacacgctcagtcgaaaaagtatctgagtagtagcatgggtcatttgagtacaaactgccaatccgttcataacatgctagagttgcaacata 293  Q
    |||||||||||||||| || ||||||||| ||||||||||| |||||| |||||||||||||||| |||||||||||||||||| ||||||||||| |||    
T  25761720 gaatctgcacacgctcggttgaaaaagtacctgagtagtagtatgggtgatttgagtacaaactggcaatccgttcataacatggtagagttgcaaaata 25761819  T
Q  294 ttgcaatacatgcttcatttcag 316  Q
      |||||||||||||||||||||    
T  25761820 ccgcaatacatgcttcatttcag 25761842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 188 - 315
Target Start/End: Complemental strand, 34832542 - 34832415
Alignment:
Q  188 agagctgaatctgcacacgctcagtcgaaaaagtatctgagtagtagcatgggtcatttgagtacaaactgccaatccgttcataacatgctagagttgc 287  Q
    |||||||||||| ||||||||   | |||||||||  |||||||||| |||||  |||||||||||||||| ||||||||||||||||||||||||||||    
T  34832542 agagctgaatcttcacacgcttgtttgaaaaagtacttgagtagtagtatgggagatttgagtacaaactggcaatccgttcataacatgctagagttgc 34832443  T
Q  288 aacatattgcaatacatgcttcatttca 315  Q
    ||||||  ||||||||||||||||||||    
T  34832442 aacataccgcaatacatgcttcatttca 34832415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 183 - 309
Target Start/End: Original strand, 38966535 - 38966661
Alignment:
Q  183 caaacagagctgaatctgcacacgctcagtcgaaaaagtatctgagtagtagcatgggtcatttgagtacaaactgccaatccgttcataacatgctaga 282  Q
    |||| |||||||||| ||||||||||| || ||||||||||||||||||||| |||||| |||| |||||||||||  || |||||||| ||||||||||    
T  38966535 caaatagagctgaatatgcacacgctcggttgaaaaagtatctgagtagtagtatgggtgattttagtacaaactggaaagccgttcatgacatgctaga 38966634  T
Q  283 gttgcaacatattgcaatacatgcttc 309  Q
    |||||||||||  | ||||||||||||    
T  38966635 gttgcaacataccgtaatacatgcttc 38966661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 32 - 174
Target Start/End: Complemental strand, 31049263 - 31049121
Alignment:
Q  32 ggtggtgaagactgtgatggctgcatgggtggatattgtggactccgaaacggaggaatcatatattgatagttggacccggttcaaagttctatgcgca 131  Q
    |||||||||||| || |||| |||||||| |||||| ||| | || || || ||| || ||||| |||||| ||| | ||||||||||||| |||||       
T  31049263 ggtggtgaagacggttatggttgcatgggaggatatcgtgaattctgatacagagcaagcatatgttgataattgcaaccggttcaaagttgtatgccac 31049164  T
Q  132 aaatttcccaagtttttggaatatgtttaaaagacaattttgg 174  Q
    |||||||| |||||| || |||||||| |||| | ||||||||    
T  31049163 aaatttcctaagtttgtgaaatatgttgaaaataaaattttgg 31049121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 32 - 174
Target Start/End: Complemental strand, 31044608 - 31044466
Alignment:
Q  32 ggtggtgaagactgtgatggctgcatgggtggatattgtggactccgaaacggaggaatcatatattgatagttggacccggttcaaagttctatgcgca 131  Q
    ||||||||| || || |||| |||||||| |||||| ||| | |  || || ||| || ||||| |||||| ||| | ||||||||||||| |||||       
T  31044608 ggtggtgaaaacggttatggttgcatgggaggatatcgtgaattttgatacagagcaagcatatgttgataattgcaaccggttcaaagttgtatgccac 31044509  T
Q  132 aaatttcccaagtttttggaatatgtttaaaagacaattttgg 174  Q
    |||||||| ||||||||| |||||||| |||| | ||||||||    
T  31044508 aaatttcctaagtttttgaaatatgttgaaaatataattttgg 31044466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 127; Significance: 1e-65; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 175
Target Start/End: Complemental strand, 52971307 - 52971133
Alignment:
Q  1 gcaagaatgggtaagcgattaagcctgcttcggtggtgaagactgtgatggctgcatgggtggatattgtggactccgaaacggaggaatcatatattga 100  Q
    ||||||||| | ||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||  ||| |||||    
T  52971307 gcaagaatgagaaagcgattaagcctggttcggtggtgaagactatgatggctgcatgggtggatattgtggactccaaaacggaggaagtatacattga 52971208  T
Q  101 tagttggacccggttcaaagttctatgcgcaaaatttcccaagtttttggaatatgtttaaaagacaattttgga 175  Q
    || ||||||||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||    
T  52971207 taattggacccggttcaaagttatatgcgcaaaatttcccaagtttttgaaatatgttgaaaagacaattttgga 52971133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 1 - 172
Target Start/End: Complemental strand, 6160915 - 6160744
Alignment:
Q  1 gcaagaatgggtaagcgattaagcctgcttcggtggtgaagactgtgatggctgcatgggtggatattgtggactccgaaacggaggaatcatatattga 100  Q
    ||||||||||| |||||||||||| |||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| ||||||| ||||||||||    
T  6160915 gcaagaatgggcaagcgattaagcgtgcttcggtggtgaagactgtgatggttgcatggatggatattgtggactccgaaatggaggaagcatatattga 6160816  T
Q  101 tagttggacccggttcaaagttctatgcgcaaaatttcccaagtttttggaatatgtttaaaagacaatttt 172  Q
    || ||||||||||||||||||| ||||| |||||||||| ||||||||||| |||||| |||||||||||||    
T  6160815 taattggacccggttcaaagttgtatgcacaaaatttcctaagtttttggattatgttgaaaagacaatttt 6160744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 183 - 316
Target Start/End: Complemental strand, 52971067 - 52970934
Alignment:
Q  183 caaacagagctgaatctgcacacgctcagtcgaaaaagtatctgagtagtagcatgggtcatttgagtacaaactgccaatccgttcataacatgctaga 282  Q
    |||||||||||||||||||| |||||| || ||||||| || |||||||||| |||||| ||||||||||||||||  ||||||||  ||||||||||||    
T  52971067 caaacagagctgaatctgcagacgctcggttgaaaaagcatttgagtagtagtatgggtgatttgagtacaaactggaaatccgtttgtaacatgctaga 52970968  T
Q  283 gttgcaacatattgcaatacatgcttcatttcag 316  Q
    |||||||||||  |||||||||||||||||||||    
T  52970967 gttgcaacataccgcaatacatgcttcatttcag 52970934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 224 - 315
Target Start/End: Original strand, 48094747 - 48094838
Alignment:
Q  224 ctgagtagtagcatgggtcatttgagtacaaactgccaatccgttcataacatgctagagttgcaacatattgcaatacatgcttcatttca 315  Q
    ||||||||||| || ||| |||||||||||||||| ||||||||| ||||||||||||||||||||||||  ||||||||||||||||||||    
T  48094747 ctgagtagtagtataggtgatttgagtacaaactggcaatccgttaataacatgctagagttgcaacataccgcaatacatgcttcatttca 48094838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 53 - 157
Target Start/End: Complemental strand, 24131989 - 24131885
Alignment:
Q  53 tgcatgggtggatattgtggactccgaaacggaggaatcatatattgatagttggacccggttcaaagttctatgcgcaaaatttcccaagtttttggaa 152  Q
    |||||||| |||||||||||| || || | ||| ||| ||||| |||||| ||| | ||||||||||||| | |||| |||||  | ||||||| |||||    
T  24131989 tgcatgggaggatattgtggattctgatatggaagaaacatatgttgataattgcagccggttcaaagttgtttgcgaaaaatggctcaagtttgtggaa 24131890  T
Q  153 tatgt 157  Q
    |||||    
T  24131889 tatgt 24131885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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