View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6911_low_22 (Length: 319)
Name: NF6911_low_22
Description: NF6911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6911_low_22 |
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Alignment Details
Target: chr7 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 23 - 309
Target Start/End: Original strand, 45355265 - 45355551
Alignment:
| Q |
23 |
caaggaatctttgatgcctagaccgcaactgtgaatatgttgtttgaatcgggaattcgttctgagtcagatgccagagacaactattctcctggatgga |
122 |
Q |
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| T |
45355265 |
caaggaatctttgatgcctgtaccgcaactgtgaatatgttgttggaagcaggaattcgtgctgagtcagatgccagagacaactattctcctggatgga |
45355364 |
T |
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| Q |
123 |
aatattctcagtgggaaatgaaaggtgttcctctaaggattgaaatcgggcccaaggatttagcaaataagcaggtcatcaatcttcgcctattggacta |
222 |
Q |
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| T |
45355365 |
aatattctcagtgggaaatgaaaggtgttcctctaaggattgaaatcgggcccaaggatttagcaaataagcaggtcatcaatcttcgcctattgcacta |
45355464 |
T |
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| Q |
223 |
attttcagaaatgtcattccgcttctactctgtctattactcaacaaaatgaaacactgaataaatctcatttaattttgcacaggt |
309 |
Q |
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| T |
45355465 |
atttgcagaaatgtcattccgcttctactctgtctattactcaacaaaatgaaacactgaataaatctcatttaattttgcacaggt |
45355551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 8e-24; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 47 - 198
Target Start/End: Complemental strand, 53491483 - 53491331
Alignment:
| Q |
47 |
gcaactgtgaatatgttgtttgaatcgggaatt-cgttctgagtcagatgccagagacaactattctcctggatggaaatattctcagtgggaaatgaaa |
145 |
Q |
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| T |
53491483 |
gcaactgtgaatatgttgtgtgaagcaaaaaatacgtgctgagttagattctagagataactgttctcctgaaaggaagtattctgattgggaattgaaa |
53491384 |
T |
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| Q |
146 |
ggtgttcctctaaggattgaaatcgggcccaaggatttagcaaataagcaggt |
198 |
Q |
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| T |
53491383 |
ggtgtccctctaaggattgaaattgggccaaaggatttagtaaataagcaggt |
53491331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 47 - 198
Target Start/End: Complemental strand, 53499076 - 53498925
Alignment:
| Q |
47 |
gcaactgtgaatatgttgtttgaatcgggaattcgttctgagtcagatgccagagacaactattctcctggatggaaatattctcagtgggaaatgaaag |
146 |
Q |
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| T |
53499076 |
gcaactgtgaatatgctgtgtgaagcaaaaatacgtgctgagttagattctagagatagctactctcctgaaaagaagtattctgaatgggaaatgaaag |
53498977 |
T |
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| Q |
147 |
gtgttcctctaaggattgaaatcgggcccaaggatttagcaaataagcaggt |
198 |
Q |
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| T |
53498976 |
gcgtccctctaaggattgaaattaggccaatggatttagaaaataaacaggt |
53498925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 76 - 198
Target Start/End: Complemental strand, 16070133 - 16070011
Alignment:
| Q |
76 |
aattcgttctgagtcagatgccagagacaactattctcctggatggaaatattctcagtgggaaatgaaaggtgttcctctaaggattgaaatcgggccc |
175 |
Q |
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||||||| | |||| |||| | ||||| |||||||||| || | | || |||||| | ||||||||||||||||| ||| ||| | ||||||| |||| |
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| T |
16070133 |
aattcgtgccgagttagattctagagataactattctcttgaaagaaagtattctgaatgggaaatgaaaggtgtccctttaatggttgaaattgggcta |
16070034 |
T |
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| Q |
176 |
aaggatttagcaaataagcaggt |
198 |
Q |
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| T |
16070033 |
aagggtttaggaaataagcaggt |
16070011 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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