View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6911_low_26 (Length: 281)

Name: NF6911_low_26
Description: NF6911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6911_low_26
NF6911_low_26
[»] chr6 (13 HSPs)
chr6 (20-281)||(33385141-33385402)
chr6 (22-280)||(33259414-33259670)
chr6 (20-281)||(33415982-33416240)
chr6 (20-281)||(9165012-9165271)
chr6 (150-279)||(24632075-24632204)
chr6 (122-273)||(33257886-33258045)
chr6 (211-280)||(31564838-31564906)
chr6 (171-220)||(33301441-33301490)
chr6 (239-280)||(33282241-33282282)
chr6 (20-175)||(33294453-33294603)
chr6 (239-280)||(33398042-33398083)
chr6 (239-280)||(33408952-33408993)
chr6 (20-71)||(9127748-9127800)
[»] scaffold0428 (3 HSPs)
scaffold0428 (22-280)||(3534-3791)
scaffold0428 (122-228)||(2004-2110)
scaffold0428 (239-280)||(11970-12011)


Alignment Details
Target: chr6 (Bit Score: 250; Significance: 1e-139; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 20 - 281
Target Start/End: Original strand, 33385141 - 33385402
Alignment:
Q  20 gtaagaaccatccttccttcggcagctgctttggatgctttcttgtctgcacactctaattaagccctttttcctaaggagctcctgtgctttgataatg 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  33385141 gtaagaaccatccttccttcggcagctgctttggatgctttcttgtctgcacactctaattaagcccttttccctaaggagctcctgtgctttgataatg 33385240  T
Q  120 tcaccttcactccctgatagagcatttttgcagtccatcattccagcccccgtttcatcccgaagttacttcacaagtgctggtgatatagttgctgcaa 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  33385241 tcaccttcactccctgatagagcatttttgcagtccatcattccagcccccgtttcattccgaagttacttcacaagtgctggtgatatagttgctgcaa 33385340  T
Q  220 tccaaagggcggcggaacagacatttaacaattagaaatcttatgtaagaattcaaagatag 281  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  33385341 tccaaagggcggcggaacagacatttaacgattagaaatcttatgtaagaattcaaagatag 33385402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 22 - 280
Target Start/End: Original strand, 33259414 - 33259670
Alignment:
Q  22 aagaaccatccttccttcggcagctgctttggatgctttcttgtctgcacactctaattaagccctttttcctaaggagctcctgtgctttgataatgtc 121  Q
    |||||| |||||||||||||||| |||| ||||||||||||||||||||| | ||||    |||  ||||||||||||| ||||||| |||||||||||     
T  33259414 aagaacgatccttccttcggcagttgctctggatgctttcttgtctgcactcgctaa----gcctattttcctaaggagttcctgtgatttgataatgtt 33259509  T
Q  122 accttcactccctgatagagcatttttgcagtcca--tcattccagcccccgtttcatcccgaagttacttcacaagtgctggtgatatagttgctgcaa 219  Q
    |||||||||| ||| ||||||||||||||||||||  |||||||||| || ||||| |||||||||| ||||||||||||||||||||||||||||||||    
T  33259510 accttcactctctgttagagcatttttgcagtccaaatcattccagctcctgtttcgtcccgaagttgcttcacaagtgctggtgatatagttgctgcaa 33259609  T
Q  220 tccaaagggcggcggaacagacatttaacaattagaaatcttatgtaagaattcaaagata 280  Q
    ||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||    
T  33259610 tccaaagggcggcggaacagacatttaacaactataaatcttatgtaagaattcaaagata 33259670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 20 - 281
Target Start/End: Original strand, 33415982 - 33416240
Alignment:
Q  20 gtaagaacc-atccttccttcggcagctgctttggatgctttcttgtctgcacactctaattaagccctttttcctaaggagctcctgtgctttgataat 118  Q
    ||||||||| |||||||||||||||| |||| ||| ||||||||||||||||| | |    |||||| ||||| ||||||||||| ||||||||||||||    
T  33415982 gtaagaacctatccttccttcggcagttgctctggttgctttcttgtctgcactcgc----taagcctttttttctaaggagctcttgtgctttgataat 33416077  T
Q  119 gtcaccttcactccctgatagagcatttttgcagtccatcattccagcccccgtttcatcccgaagttacttcacaagtgctggtgatatagttgctgca 218  Q
    ||||||||||||  | || ||||||||||||||||||||||||||||| || ||||| |||||||||| |||||||||||||||||||||||||||||||    
T  33416078 gtcaccttcactttcagaaagagcatttttgcagtccatcattccagctcctgtttcgtcccgaagttgcttcacaagtgctggtgatatagttgctgca 33416177  T
Q  219 atccaaagggcggcggaacagacatttaacaattagaaatcttatgtaagaattcaaagatag 281  Q
    |||||||||||||||||||||||||||||||||||||| |||||  ||| |||||||||||||    
T  33416178 atccaaagggcggcggaacagacatttaacaattagaagtcttaactaaaaattcaaagatag 33416240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 20 - 281
Target Start/End: Original strand, 9165012 - 9165271
Alignment:
Q  20 gtaagaacc-atccttccttcggcagctgctttggatgctttcttgtctgcacactctaattaagccctttttcctaaggagctcctgtgctttgataat 118  Q
    ||||||||| |||||||||||||||| |||| ||||||||||||||| ||||| | ||||    ||| ||||||||||||||||  ||||||||||||||    
T  9165012 gtaagaacctatccttccttcggcagttgctctggatgctttcttgtttgcactcgctaa----gccttttttcctaaggagcttttgtgctttgataat 9165107  T
Q  119 gtcaccttcactccctgatagagcatttttgcagtccatcattccagcccccgtttcatcccgaagttacttcacaagtgctggtgatatagttgctgca 218  Q
    ||||| ||||||| |||||||||||||||||  |||||||||||| || || ||||| ||| |||||| ||||||| ||||   ||||||||||  ||||    
T  9165108 gtcacgttcactctctgatagagcatttttgtggtccatcattcctgctcctgtttcctcctgaagttccttcacaggtgccaatgatatagtttgtgca 9165207  T
Q  219 atccaaagggcg-gcggaacagacatttaacaattagaaatcttatgtaagaattcaaagatag 281  Q
    |||||||  | | ||  ||||||||||||||||||||||||||||||||| |||||||||||||    
T  9165208 atccaaaaagggagcataacagacatttaacaattagaaatcttatgtaaaaattcaaagatag 9165271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 150 - 279
Target Start/End: Complemental strand, 24632204 - 24632075
Alignment:
Q  150 cagtccatcattccagcccccgtttcatcccgaagttacttcacaagtgctggtgatatagttgctgcaatccaaagggcggcggaacagacatttaaca 249  Q
    ||||||||||||||||| || |||||||||| ||||| |||||||||||||||||||| |||||||||||||||||  |  || ||||||||||||||||    
T  24632204 cagtccatcattccagctcctgtttcatcccaaagttgcttcacaagtgctggtgataaagttgctgcaatccaaacaggagcagaacagacatttaaca 24632105  T
Q  250 attagaaatcttatgtaagaattcaaagat 279  Q
    ||||||||||||||||| ||||||||||||    
T  24632104 attagaaatcttatgtaggaattcaaagat 24632075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 122 - 273
Target Start/End: Original strand, 33257886 - 33258045
Alignment:
Q  122 accttcactccctgatagagcatttttgcagtccatcattccagcccccgtttcatcccgaagttacttcacaagtgctggtgatatagttgctgcaatc 221  Q
    |||||||||| | ||||||| ||||||||| |||||||||||||| || ||||| || ||||||| | | |||| ||||||| |||||||||||||||||    
T  33257886 accttcactctccgatagaggatttttgcactccatcattccagctcctgtttcgtcgcgaagttgccttacaaatgctggtaatatagttgctgcaatc 33257985  T
Q  222 caaa--------gggcggcggaacagacatttaacaattagaaatcttatgtaagaattc 273  Q
    ||||        ||| ||| ||||||||||| ||||||||||||| || |||||||||||    
T  33257986 caaaggggggggggggggcagaacagacattcaacaattagaaatattttgtaagaattc 33258045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 211 - 280
Target Start/End: Complemental strand, 31564906 - 31564838
Alignment:
Q  211 ttgctgcaatccaaagggcggcggaacagacatttaacaattagaaatcttatgtaagaattcaaagata 280  Q
    |||||||||||||||||| || |||| |||||||||| || ||||||||||||||||||||| |||||||    
T  31564906 ttgctgcaatccaaaggg-ggtggaatagacatttaaaaaatagaaatcttatgtaagaatttaaagata 31564838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 171 - 220
Target Start/End: Original strand, 33301441 - 33301490
Alignment:
Q  171 gtttcatcccgaagttacttcacaagtgctggtgatatagttgctgcaat 220  Q
    ||||| |||||||||| |||||||||||||||||||||||||||||||||    
T  33301441 gtttcgtcccgaagttgcttcacaagtgctggtgatatagttgctgcaat 33301490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 239 - 280
Target Start/End: Original strand, 33282241 - 33282282
Alignment:
Q  239 gacatttaacaattagaaatcttatgtaagaattcaaagata 280  Q
    ||||||||| ||||||||||||||||||||||||||| ||||    
T  33282241 gacatttaaaaattagaaatcttatgtaagaattcaacgata 33282282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 175
Target Start/End: Original strand, 33294453 - 33294603
Alignment:
Q  20 gtaagaacc-atccttccttcggcagctgctttggatgctttcttgtctgcacactctaattaagccctttttcctaaggagctcctgtgctttgataat 118  Q
    ||||||||| ||||||||||||||||  ||| ||| ||||||||  ||||||| | |    |||||| ||||||||||| ||||  ||||||||||| ||    
T  33294453 gtaagaacctatccttccttcggcagtagctctggctgctttctattctgcactcgc----taagccttttttcctaagaagcttatgtgctttgatgat 33294548  T
Q  119 gtcaccttcactccctgatagagcatttttgcagtccatcattccagcccccgtttc 175  Q
    |||||||| | |  || | |||||||||||| ||  |||||||||||| || |||||    
T  33294549 gtcaccttaagt--ctcagagagcatttttgtagctcatcattccagctccagtttc 33294603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 280
Target Start/End: Original strand, 33398042 - 33398083
Alignment:
Q  239 gacatttaacaattagaaatcttatgtaagaattcaaagata 280  Q
    ||||||||| ||||| ||||||||||||||||||||| ||||    
T  33398042 gacatttaaaaattataaatcttatgtaagaattcaacgata 33398083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 280
Target Start/End: Original strand, 33408952 - 33408993
Alignment:
Q  239 gacatttaacaattagaaatcttatgtaagaattcaaagata 280  Q
    ||||||||| ||||| ||||||||||||||||||||| ||||    
T  33408952 gacatttaaaaattataaatcttatgtaagaattcaacgata 33408993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 71
Target Start/End: Complemental strand, 9127800 - 9127748
Alignment:
Q  20 gtaagaacc-atccttccttcggcagctgctttggatgctttcttgtctgcac 71  Q
    ||||||||| |||||||||||||||| |||| ||| || ||||||||||||||    
T  9127800 gtaagaacctatccttccttcggcagttgctctggctgatttcttgtctgcac 9127748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 166; Significance: 7e-89; HSPs: 3)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 22 - 280
Target Start/End: Original strand, 3534 - 3791
Alignment:
Q  22 aagaaccatccttccttcggcagctgctttggatgctttcttgtctgcacactctaattaagccc-tttttcctaaggagctcctgtgctttgataatgt 120  Q
    |||||| |||||||||||||||| |||| ||||||||||||||||||||| | ||||    |||  |||||||||||||| ||||||| |||||||||||    
T  3534 aagaacgatccttccttcggcagttgctctggatgctttcttgtctgcactcgctaa----gcctatttttcctaaggagttcctgtgatttgataatgt 3629  T
Q  121 caccttcactccctgatagagcatttttgcagtcca--tcattccagcccccgtttcatcccgaagttacttcacaagtgctggtgatatagttgctgca 218  Q
    ||||||||||| ||||||||||||||||||||||||  |||||||||| || ||||| |||||||||| |||||||||||||||||||||||||||||||    
T  3630 caccttcactctctgatagagcatttttgcagtccaaatcattccagctcctgtttcgtcccgaagttgcttcacaagtgctggtgatatagttgctgca 3729  T
Q  219 atccaaagggcggcggaacagacatttaacaattagaaatcttatgtaagaattcaaagata 280  Q
    |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||    
T  3730 atccaaagggcggcggaacagacatttaacaactataaatcttatgtaagaattcaaagata 3791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 122 - 228
Target Start/End: Original strand, 2004 - 2110
Alignment:
Q  122 accttcactccctgatagagcatttttgcagtccatcattccagcccccgtttcatcccgaagttacttcacaagtgctggtgatatagttgctgcaatc 221  Q
    |||||||||| | ||||||| ||||||||| |||||||||||||| || ||||| || ||||||| | | |||| ||||||| |||||||||||||||||    
T  2004 accttcactctccgatagaggatttttgcactccatcattccagctcctgtttcgtcgcgaagttgccttacaaatgctggtaatatagttgctgcaatc 2103  T
Q  222 caaaggg 228  Q
    |||||||    
T  2104 caaaggg 2110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 239 - 280
Target Start/End: Complemental strand, 12011 - 11970
Alignment:
Q  239 gacatttaacaattagaaatcttatgtaagaattcaaagata 280  Q
    ||||||||| ||||||||||||||||||||||||||| ||||    
T  12011 gacatttaaaaattagaaatcttatgtaagaattcaacgata 11970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University