View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6911_low_27 (Length: 275)
Name: NF6911_low_27
Description: NF6911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6911_low_27 |
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Alignment Details
Target: chr1 (Bit Score: 178; Significance: 5e-96; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 10 - 256
Target Start/End: Complemental strand, 29104563 - 29104329
Alignment:
| Q |
10 |
tgagatggacatcaacagttggttagaagcggttaagatctcagtgaggacgctcttcgccggagagaggaacctctgcgatcgaatcttcgcttcgaat |
109 |
Q |
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| T |
29104563 |
tgagatgaaaatcaacagttggttagaggcggttaagatctcagtgaggacgctcttcgccggagagaggaacctctgcgatcgaatcttcgcttcgaat |
29104464 |
T |
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| Q |
110 |
tccatcaataattccatcaaagaagcttgttttgctgagatttctaagaatggagctattttgcttttcagatttcctgaagtcgttgcaaaaacaaaga |
209 |
Q |
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| T |
29104463 |
tccatcaa------------agaagcttgttttgctgagatttctaaggatggagctattttacttttaagatttcctgaagtcgttgcaaaaacaaaga |
29104376 |
T |
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| Q |
210 |
aatcaaagccggagaagatttttcgattgcttgatatgtacgctaca |
256 |
Q |
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| T |
29104375 |
aatcaaagccggagaagatttttcgcttgcttgatatgtacgctaca |
29104329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 10 - 249
Target Start/End: Complemental strand, 29090302 - 29090075
Alignment:
| Q |
10 |
tgagatggacatcaacagttggttagaagcggttaagatctcagtgaggacgctcttcgccggagagaggaacctctgcgatcgaatcttcgcttcgaat |
109 |
Q |
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| T |
29090302 |
tgagatgaaaatcaactgttggttagaggcagttaagatctcagtgagaacactcttttctggagagagaaacctctgcgaacgaattttcgcttcgaat |
29090203 |
T |
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| Q |
110 |
tccatcaataattccatcaaagaagcttgttttgctgagatttctaaga-atggagctattttgcttttcagatttcctgaagtcgttgcaaaaacaaag |
208 |
Q |
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| T |
29090202 |
tcc------------atcagagaagcttgttttggtgaaatttc-aagagatggagctactcttctcttacgatttcctgaattcgttgcgaaaacaaag |
29090116 |
T |
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| Q |
209 |
aaatcaaagccggagaagatttttcgattgcttgatatgta |
249 |
Q |
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| T |
29090115 |
aaatggacaccggagaagattttccgtttgcttgatatgta |
29090075 |
T |
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