View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6911_low_30 (Length: 259)
Name: NF6911_low_30
Description: NF6911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6911_low_30 |
 | |
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| [»] scaffold0264 (1 HSPs) |
| | |
|
| [»] scaffold0074 (1 HSPs) |
| | |
|
| [»] scaffold0007 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 209; Significance: 1e-114; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 20 - 248
Target Start/End: Original strand, 22205026 - 22205254
Alignment:
| Q |
20 |
ctattaatgctccttcaccaaatgagcttgttcctcaaacaaatcattcaaaacaagattctggattttcaaaagatccattttatctttcctataattg |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| |||||||||||||||||||||||||||| |
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|
| T |
22205026 |
ctattaatgctccttcaccaaatgagcttgttcctcaaacaaatcattcaacccaagattctagattttcacaagatccattttatctttcctataattg |
22205125 |
T |
|
| Q |
120 |
ctcaagaaaccacagtaaaatcactaacaaaaacttcaaattacttctctcttatttgtcctccaacgccacaaatggcagaaatttccaaaaagtaaaa |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
22205126 |
ctcaagaaaccacagtaaaatcactaacaaaaacttcaaattacttctctcttatttgtcctccaacgccacaaatggcggaaatttccaaaaagtaaaa |
22205225 |
T |
|
| Q |
220 |
gtggaagaaatggtgtacggcctcttcat |
248 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
22205226 |
gtggaagaaatggtgtacggcctcttcat |
22205254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 20 - 248
Target Start/End: Original strand, 24385238 - 24385466
Alignment:
| Q |
20 |
ctattaatgctccttcaccaaatgagcttgttcctcaaacaaatcattcaaaacaagattctggattttcaaaagatccattttatctttcctataattg |
119 |
Q |
| |
|
|||||| |||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||| ||||||||||||||||||| |
|
|
| T |
24385238 |
ctattattgctccttcatcaaatgagcttgttcctcaaacaaatgattcaaaacaagattctagattttcacaagatccaatttatctttcctataattg |
24385337 |
T |
|
| Q |
120 |
ctcaagaaaccacagtaaaatcactaacaaaaacttcaaattacttctctcttatttgtcctccaacgccacaaatggcagaaatttccaaaaagtaaaa |
219 |
Q |
| |
|
|||||||||||||| || |||||| ||| | |||||||||||||||||||||||| |||||||||||||||||||||||| ||| ||| | | |||||| |
|
|
| T |
24385338 |
ctcaagaaaccacaatataatcacaaacgataacttcaaattacttctctcttatctgtcctccaacgccacaaatggcaaaaaattctatactgtaaaa |
24385437 |
T |
|
| Q |
220 |
gtggaagaaatggtgtacggcctcttcat |
248 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
24385438 |
gtggaagaaatggtgtacggcctcttcat |
24385466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 20 - 246
Target Start/End: Complemental strand, 20086137 - 20085911
Alignment:
| Q |
20 |
ctattaatgctccttcaccaaatgagcttgttcctcaaacaaatcattcaaaacaagattctggattttcaaaagatccattttatctttcctataattg |
119 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| |||||||| |||||||| ||||||||||||||||||| |
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|
| T |
20086137 |
ctattaatgctccttcgccaaatgagcttgttcctcaaacaaatcattcaaaccaagattctagattttcacaagatccaatttatctttcctataattg |
20086038 |
T |
|
| Q |
120 |
ctcaagaaaccacagtaaaatcactaacaaaaacttcaaattacttctctcttatttgtcctccaacgccacaaatggcagaaatttccaaaaagtaaaa |
219 |
Q |
| |
|
|||||||||| |||||| |||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| ||| || | | || ||| |
|
|
| T |
20086037 |
ctcaagaaacaacagtacaatcactaacaataacttcaaattacttctctcttatctgtcctccaacgccacaaatggcgaaaaattttatactgttaaa |
20085938 |
T |
|
| Q |
220 |
gtggaagaaatggtgtacggcctcttc |
246 |
Q |
| |
|
||||| ||||||||||||||||||||| |
|
|
| T |
20085937 |
gtggatgaaatggtgtacggcctcttc |
20085911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 24 - 246
Target Start/End: Complemental strand, 20238046 - 20237824
Alignment:
| Q |
24 |
taatgctccttcaccaaatgagcttgttcctcaaacaaatcattcaaaacaagattctggattttcaaaagatccattttatctttcctataattgctca |
123 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| ||| || |||||||| ||||||||||| |||||||| || |
|
|
| T |
20238046 |
taatgctccttcactaaatgagcttgttcctcaaacaaatgattcaaaacaagattctaattttacacaagatccagtttatctttccgataattgccca |
20237947 |
T |
|
| Q |
124 |
agaaaccacagtaaaatcactaacaaaaacttcaaattacttctctcttatttgtcctccaacgccacaaatggcagaaatttccaaaaagtaaaagtgg |
223 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || ||||| | | ||||||| |
|
|
| T |
20237946 |
agaaaccacagtacaatcactaacaaaaacttcaaattacttctctcttatttgtcttccaacgccacaaatggcacaacattccatattgctaaagtgg |
20237847 |
T |
|
| Q |
224 |
aagaaatggtgtacggcctcttc |
246 |
Q |
| |
|
|||||| |||||||||||||||| |
|
|
| T |
20237846 |
aagaaaaggtgtacggcctcttc |
20237824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 24 - 246
Target Start/End: Complemental strand, 22132030 - 22131808
Alignment:
| Q |
24 |
taatgctccttcaccaaatgagcttgttcctcaaacaaatcattcaaaacaagattctggattttcaaaagatccattttatctttcctataattgctca |
123 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| ||| || |||||||| ||||||||||| |||||||| || |
|
|
| T |
22132030 |
taatgctccttcactaaatgagcttgttcctcaaacaaatgattcaaaacaagattctaattttacacaagatccagtttatctttccgataattgccca |
22131931 |
T |
|
| Q |
124 |
agaaaccacagtaaaatcactaacaaaaacttcaaattacttctctcttatttgtcctccaacgccacaaatggcagaaatttccaaaaagtaaaagtgg |
223 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || ||||| | | ||||||| |
|
|
| T |
22131930 |
agaaaccacagtacaatcactaacaaaaacttcaaattacttctctcttatttgtcttccaacgccacaaatggcacaacattccatattgctaaagtgg |
22131831 |
T |
|
| Q |
224 |
aagaaatggtgtacggcctcttc |
246 |
Q |
| |
|
|||||| |||||||||||||||| |
|
|
| T |
22131830 |
aagaaaaggtgtacggcctcttc |
22131808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 20 - 248
Target Start/End: Complemental strand, 20205457 - 20205229
Alignment:
| Q |
20 |
ctattaatgctccttcaccaaatgagcttgttcctcaaacaaatcattcaaaacaagattctggattttcaaaagatccattttatctttcctataattg |
119 |
Q |
| |
|
|||||| || || ||||||||||||||| | ||||| ||||||| |||| |||||||||||| | ||||| |||| |||||||||||||||||||||| |
|
|
| T |
20205457 |
ctattactgttctttcaccaaatgagctagctcctcgaacaaatgattccaaacaagattctaaactttcagaagaatcattttatctttcctataattg |
20205358 |
T |
|
| Q |
120 |
ctcaagaaaccacagtaaaatcactaacaaaaacttcaaattacttctctcttatttgtcctccaacgccacaaatggcagaaatttccaaaaagtaaaa |
219 |
Q |
| |
|
|||||||||||||| | ||||||| |||||||| ||||||||||||| |||||||||| || |||||||| | |||| ||| || || | | ||| |
|
|
| T |
20205357 |
ctcaagaaaccacaacacaatcactgacaaaaacatcaaattacttctgtcttatttgttgtcgaacgccaccatcggcaaaaaatttcatagccttaaa |
20205258 |
T |
|
| Q |
220 |
gtggaagaaatggtgtacggcctcttcat |
248 |
Q |
| |
|
||||||||||| ||||| || |||||||| |
|
|
| T |
20205257 |
gtggaagaaattgtgtatggtctcttcat |
20205229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 20 - 248
Target Start/End: Complemental strand, 22099480 - 22099252
Alignment:
| Q |
20 |
ctattaatgctccttcaccaaatgagcttgttcctcaaacaaatcattcaaaacaagattctggattttcaaaagatccattttatctttcctataattg |
119 |
Q |
| |
|
|||||| || || ||||||||||||||| | ||||| ||||||| |||| |||||||||||| | ||||| |||| |||||||||||||||||||||| |
|
|
| T |
22099480 |
ctattactgttctttcaccaaatgagctagctcctcgaacaaatgattccaaacaagattctaaactttcagaagaatcattttatctttcctataattg |
22099381 |
T |
|
| Q |
120 |
ctcaagaaaccacagtaaaatcactaacaaaaacttcaaattacttctctcttatttgtcctccaacgccacaaatggcagaaatttccaaaaagtaaaa |
219 |
Q |
| |
|
|||||||||||||| | ||||||| |||||||| ||||||||||||| |||||||||| || |||||||| | |||| ||| || || | | ||| |
|
|
| T |
22099380 |
ctcaagaaaccacaacacaatcactgacaaaaacatcaaattacttctgtcttatttgttgtcgaacgccaccatcggcaaaaaatttcatagccttaaa |
22099281 |
T |
|
| Q |
220 |
gtggaagaaatggtgtacggcctcttcat |
248 |
Q |
| |
|
||||||||||| ||||| || |||||||| |
|
|
| T |
22099280 |
gtggaagaaattgtgtatggtctcttcat |
22099252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 37 - 191
Target Start/End: Complemental strand, 21972004 - 21971847
Alignment:
| Q |
37 |
ccaaatgagcttgttcctcaaacaaatcattcaaaacaagattctggatt---ttcaaaagatccattttatctttcctataattgctcaagaaaccaca |
133 |
Q |
| |
|
||||||||||||| ||||||||||||| |||| | |||||||||| | | |||| ||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
21972004 |
ccaaatgagcttgctcctcaaacaaatgattccatacaagattctaaaatactttcagaagatccattttatctttcctataattgctcaagaaattaca |
21971905 |
T |
|
| Q |
134 |
gtaaaatcactaacaaaaacttcaaattacttctctcttatttgtcctccaacgccac |
191 |
Q |
| |
|
|| ||||||| |||||||| ||||| ||||||| |||||||||| || |||||||| |
|
|
| T |
21971904 |
atacaatcactgacaaaaacatcaaactacttctgtcttatttgttgtcgaacgccac |
21971847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0264 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: scaffold0264
Description:
Target: scaffold0264; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 20 - 248
Target Start/End: Complemental strand, 16086 - 15859
Alignment:
| Q |
20 |
ctattaatgctccttcaccaaatgagcttgttcctcaaacaaatcattcaaaacaagattctggattttcaaaagatccattttatctttcctataattg |
119 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| |||||||| |||||||| ||||||||||||||||||| |
|
|
| T |
16086 |
ctattaatgctccttcgccaaatgagcttgttcctcaaacaaatcattcaaaccaagattctagattttcacaagatccaatttatctttcctataattg |
15987 |
T |
|
| Q |
120 |
ctcaagaaaccacagtaaaatcactaacaaaaacttcaaattacttctctcttatttgtcctccaacgccacaaatggcagaaatttccaaaaagtaaaa |
219 |
Q |
| |
|
|||||||||| |||||| |||||||||||| |||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
15986 |
ctcaagaaacaacagtacaatcactaacaataacttcaaattacttctctcttatctgtcctccaacgccac-aatggcagaaatttccaaaaagtaaaa |
15888 |
T |
|
| Q |
220 |
gtggaagaaatggtgtacggcctcttcat |
248 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
15887 |
gtggaagaaatggtgtacggcctcttcat |
15859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0074 (Bit Score: 149; Significance: 9e-79; HSPs: 1)
Name: scaffold0074
Description:
Target: scaffold0074; HSP #1
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 32 - 248
Target Start/End: Original strand, 47864 - 48080
Alignment:
| Q |
32 |
cttcaccaaatgagcttgttcctcaaacaaatcattcaaaacaagattctggattttcaaaagatccattttatctttcctataattgctcaagaaacca |
131 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| |||||||| |||||||||||||||||||| |||||||||| |
|
|
| T |
47864 |
cttcaccaaatgagcttgttcctcaaacaaaacattcaaaacaagattctagattttcacaagatccaatttatctttcctataattgcccaagaaacca |
47963 |
T |
|
| Q |
132 |
cagtaaaatcactaacaaaaacttcaaattacttctctcttatttgtcctccaacgccacaaatggcagaaatttccaaaaagtaaaagtggaagaaatg |
231 |
Q |
| |
|
||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||| | || ||||||||||||||| |
|
|
| T |
47964 |
cagtacaatcactaagaaaaacttcaaattacttctctcttatttgtcctccaacgccacaaatggcgaaaaatcccatactgttaaagtggaagaaatg |
48063 |
T |
|
| Q |
232 |
gtgtacggcctcttcat |
248 |
Q |
| |
|
|||| ||||||||||| |
|
|
| T |
48064 |
ctgtatggcctcttcat |
48080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007 (Bit Score: 141; Significance: 5e-74; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 32 - 248
Target Start/End: Original strand, 5391 - 5607
Alignment:
| Q |
32 |
cttcaccaaatgagcttgttcctcaaacaaatcattcaaaacaagattctggattttcaaaagatccattttatctttcctataattgctcaagaaacca |
131 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||| || |||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
5391 |
cttcaccaaatgagcttgttcctcaaacaaactattcaaaacaagatactagattttcaaaagatcccttttatctttcctataattgctcaagaaacca |
5490 |
T |
|
| Q |
132 |
cagtaaaatcactaacaaaaacttcaaattacttctctcttatttgtcctccaacgccacaaatggcagaaatttccaaaaagtaaaagtggaagaaatg |
231 |
Q |
| |
|
|||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||| | || ||||||||||||| | |
|
|
| T |
5491 |
aagtacaatcactaagaaaaacttcaaattacttctctcttatttgtcctccaacgccacaaatggcgaaaaatcccatactgttaaagtggaagaaacg |
5590 |
T |
|
| Q |
232 |
gtgtacggcctcttcat |
248 |
Q |
| |
|
|||| ||||||||||| |
|
|
| T |
5591 |
ctgtatggcctcttcat |
5607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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