View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6911_low_32 (Length: 254)

Name: NF6911_low_32
Description: NF6911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6911_low_32
NF6911_low_32
[»] chr5 (5 HSPs)
chr5 (6-244)||(37580361-37580599)
chr5 (120-219)||(357228-357327)
chr5 (143-219)||(3489209-3489286)
chr5 (121-219)||(3489263-3489361)
chr5 (102-160)||(34463879-34463936)
[»] chr7 (14 HSPs)
chr7 (6-244)||(3428986-3429224)
chr7 (120-219)||(16230265-16230364)
chr7 (102-174)||(803312-803383)
chr7 (104-219)||(13489575-13489690)
chr7 (121-219)||(16144925-16145023)
chr7 (121-219)||(29084545-29084643)
chr7 (143-219)||(16230341-16230418)
chr7 (102-160)||(16292204-16292261)
chr7 (143-219)||(2551555-2551632)
chr7 (143-219)||(16230395-16230472)
chr7 (143-217)||(16144873-16144948)
chr7 (143-219)||(2551501-2551578)
chr7 (179-219)||(15188119-15188160)
chr7 (143-219)||(15188192-15188269)
[»] chr3 (17 HSPs)
chr3 (6-244)||(3679233-3679471)
chr3 (6-244)||(30015811-30016049)
chr3 (32-219)||(15597917-15598098)
chr3 (110-219)||(4438145-4438255)
chr3 (110-219)||(18879613-18879722)
chr3 (120-219)||(7094140-7094239)
chr3 (110-219)||(5141980-5142089)
chr3 (110-219)||(30073316-30073425)
chr3 (121-219)||(24213715-24213813)
chr3 (143-219)||(11930500-11930577)
chr3 (102-166)||(6968566-6968629)
chr3 (121-219)||(6566328-6566426)
chr3 (102-160)||(20438335-20438392)
chr3 (102-160)||(41435500-41435557)
chr3 (143-219)||(6566403-6566480)
chr3 (115-219)||(15699509-15699613)
chr3 (143-219)||(22954498-22954575)
[»] scaffold0094 (1 HSPs)
scaffold0094 (32-219)||(40316-40498)
[»] chr1 (2 HSPs)
chr1 (104-219)||(13454647-13454762)
chr1 (120-219)||(22475122-22475221)
[»] chr8 (5 HSPs)
chr8 (104-219)||(25770369-25770483)
chr8 (110-219)||(19839237-19839346)
chr8 (143-219)||(14207067-14207144)
chr8 (143-219)||(14207121-14207198)
chr8 (182-219)||(23918944-23918982)
[»] chr6 (5 HSPs)
chr6 (110-219)||(23980181-23980290)
chr6 (115-219)||(25702179-25702283)
chr6 (121-219)||(18114501-18114599)
chr6 (143-219)||(18114576-18114653)
chr6 (179-219)||(18217684-18217725)
[»] scaffold0047 (2 HSPs)
scaffold0047 (120-219)||(85955-86054)
scaffold0047 (143-219)||(86031-86108)
[»] chr4 (7 HSPs)
chr4 (120-219)||(14734453-14734552)
chr4 (104-219)||(19762362-19762477)
chr4 (102-219)||(17302793-17302906)
chr4 (120-219)||(22151663-22151762)
chr4 (143-219)||(10789265-10789342)
chr4 (121-219)||(10789190-10789288)
chr4 (110-219)||(1887136-1887242)
[»] chr2 (3 HSPs)
chr2 (121-219)||(42388574-42388672)
chr2 (120-174)||(21765418-21765471)
chr2 (143-219)||(42388649-42388726)
[»] scaffold0632 (1 HSPs)
scaffold0632 (110-219)||(9092-9201)
[»] scaffold0014 (1 HSPs)
scaffold0014 (13-59)||(184355-184401)
[»] scaffold0782 (1 HSPs)
scaffold0782 (105-174)||(5759-5827)
[»] scaffold0545 (1 HSPs)
scaffold0545 (110-219)||(5267-5377)
[»] scaffold0002 (1 HSPs)
scaffold0002 (172-219)||(301101-301149)
[»] scaffold0046 (1 HSPs)
scaffold0046 (179-219)||(40371-40412)


Alignment Details
Target: chr5 (Bit Score: 207; Significance: 1e-113; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 6 - 244
Target Start/End: Original strand, 37580361 - 37580599
Alignment:
Q  6 atggacatcatggatttgtttgatagtgcacattcagattttgaggagtagtctgcttcaagagctcaagagctccctgtttgttttatcctttatgctt 105  Q
    |||||| ||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  37580361 atggacttcatggatttgtttgatggtgcacattcagatttcgaggagtagtctgcttcaagagctcaagagctccccgtttgttttatcctttatgctt 37580460  T
Q  106 tctattatgtactctggagtctatcccttggctcaatttgttaaaaagggaattaacttgtttctatttgcaggtctatcccttgactttgttttagaaa 205  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||    
T  37580461 tctattatgtactttggagtctatcccttggctcaatttgttaaaaagggaattaacttgtttctatttgtaggactatcccttgactttgttttagaaa 37580560  T
Q  206 gggaattatcttgtccaaggaaactttctgttatgatgt 244  Q
    |||||||||||||||||||||||||||| ||||||||||    
T  37580561 gggaattatcttgtccaaggaaactttcagttatgatgt 37580599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 120 - 219
Target Start/End: Complemental strand, 357327 - 357228
Alignment:
Q  120 tggagtctatcccttggctcaatttgttaaaaagggaattaacttgtttctatttgcaggtctatcccttgactttgtt-ttagaaagggaattatcttg 218  Q
    ||||||||||||||||||||| ||||||  ||||||||||| |||||||   |||| | || ||||||||| ||||||| ||||||||||||||||||||    
T  357327 tggagtctatcccttggctcactttgtt-taaagggaattatcttgttttattttgaaagtttatcccttggctttgttgttagaaagggaattatcttg 357229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 143 - 219
Target Start/End: Complemental strand, 3489286 - 3489209
Alignment:
Q  143 ttgttaaaaagggaattaacttgtttctatttgcaggtctatcccttgactttgtt-ttagaaagggaattatcttgt 219  Q
    |||||| ||||||||||| ||||||| | |||| | || ||||||||| ||||||| |||||||||||||||||||||    
T  3489286 ttgttagaaagggaattatcttgtttttctttgaaagtttatcccttggctttgttgttagaaagggaattatcttgt 3489209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 121 - 219
Target Start/End: Complemental strand, 3489361 - 3489263
Alignment:
Q  121 ggagtctatcccttggctcaatttgttaaaaagggaattaacttgtttctatttgcaggtctatcccttgactttgtt-ttagaaagggaattatcttgt 219  Q
    ||||||||||||||||||    |||||| ||||||||||| |||||||   |||| | || ||||||||| ||||||| |||||||||||||||||||||    
T  3489361 ggagtctatcccttggct-ttgttgttagaaagggaattatcttgttttattttgaaagtttatcccttggctttgttgttagaaagggaattatcttgt 3489263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 102 - 160
Target Start/End: Original strand, 34463879 - 34463936
Alignment:
Q  102 gctttctattatgtactctggagtctatcccttggctcaatttgttaaaaagggaatta 160  Q
    ||||||| ||||| ||| ||||||||||||||||||||| |||| ||||||||||||||    
T  34463879 gctttcttttatgaactttggagtctatcccttggctcagtttg-taaaaagggaatta 34463936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 195; Significance: 1e-106; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 6 - 244
Target Start/End: Complemental strand, 3429224 - 3428986
Alignment:
Q  6 atggacatcatggatttgtttgatagtgcacattcagattttgaggagtagtctgcttcaagagctcaagagctccctgtttgttttatcctttatgctt 105  Q
    |||||| ||||||||||||||||| |||||||||||||||| |||||||||||| |||||||||||||||| ||||| ||||||||||||||||||||||    
T  3429224 atggacttcatggatttgtttgatggtgcacattcagatttcgaggagtagtctacttcaagagctcaagaactccccgtttgttttatcctttatgctt 3429125  T
Q  106 tctattatgtactctggagtctatcccttggctcaatttgttaaaaagggaattaacttgtttctatttgcaggtctatcccttgactttgttttagaaa 205  Q
    || |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||    
T  3429124 tccattatgtactttggagtctatcccttggctcaatttgttaaaaagggaattaacttgtttctatttgtaggactatcccttgactttgttttagaaa 3429025  T
Q  206 gggaattatcttgtccaaggaaactttctgttatgatgt 244  Q
    |||||||||||||||||||||||||||| ||||||||||    
T  3429024 gggaattatcttgtccaaggaaactttcagttatgatgt 3428986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 120 - 219
Target Start/End: Original strand, 16230265 - 16230364
Alignment:
Q  120 tggagtctatcccttggctcaatttgttaaaaagggaattaacttgtttctatttgcaggtctatcccttgactttgtt-ttagaaagggaattatcttg 218  Q
    ||||||||||||||||||||| ||||||  ||||||||||| |||||||   |||| | || ||||||||| ||||||| ||||||||||||||||||||    
T  16230265 tggagtctatcccttggctcattttgtt-taaagggaattatcttgttttattttgaaagtttatcccttggctttgttgttagaaagggaattatcttg 16230363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 102 - 174
Target Start/End: Complemental strand, 803383 - 803312
Alignment:
Q  102 gctttctattatgtactctggagtctatcccttggctcaatttgttaaaaagggaattaacttgtttctattt 174  Q
    ||||||| ||||| ||| ||||||||||||||||||||| |||| |||||||||||||| ||||||| |||||    
T  803383 gctttcttttatgaactttggagtctatcccttggctcagtttg-taaaaagggaattatcttgtttttattt 803312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 104 - 219
Target Start/End: Complemental strand, 13489690 - 13489575
Alignment:
Q  104 tttctattatgtactctggagtctatcccttggctcaatttgttaaaaagggaattaacttgtttctatttgcaggtctatcccttgactttgtt-ttag 202  Q
    ||||| |||| |||| ||||||||||||||||||||| |||||| ||||||||| || |||||||   |||| | |||||||| ||| ||||||| ||||    
T  13489690 tttctgttatttactttggagtctatcccttggctcagtttgtt-aaaagggaagtatcttgttttactttgaaagtctatcctttggctttgttgttag 13489592  T
Q  203 aaagggaattatcttgt 219  Q
     || |||||||||||||    
T  13489591 gaaaggaattatcttgt 13489575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 121 - 219
Target Start/End: Complemental strand, 16145023 - 16144925
Alignment:
Q  121 ggagtctatcccttggctcaatttgttaaaaagggaattaacttgtttctatttgcaggtctatcccttgactttgtt-ttagaaagggaattatcttgt 219  Q
    |||||||||||||||| ||| |||||| ||| |||||||| |||||||   |||| | || ||||||||| ||||||| |||||||||||||||||||||    
T  16145023 ggagtctatcccttggttcactttgttgaaa-gggaattatcttgttttattttgaaagtttatcccttggctttgttgttagaaagggaattatcttgt 16144925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 121 - 219
Target Start/End: Original strand, 29084545 - 29084643
Alignment:
Q  121 ggagtctatcccttggctcaatttgttaaaaagggaattaacttgtttctatttgcaggtctatcccttgactttgtt-ttagaaagggaattatcttgt 219  Q
    |||||||||||||||| ||| |||||| ||| |||||||| |||||||   |||| | || ||||||||| ||||||| |||||||||||||||||||||    
T  29084545 ggagtctatcccttggttcactttgttgaaa-gggaattatcttgttttattttgaaagtttatcccttgtctttgttgttagaaagggaattatcttgt 29084643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 143 - 219
Target Start/End: Original strand, 16230341 - 16230418
Alignment:
Q  143 ttgttaaaaagggaattaacttgtttctatttgcaggtctatcccttgactttgtt-ttagaaagggaattatcttgt 219  Q
    |||||| ||||||||||| |||||||   |||| | |||||||||||| ||||||| |||||||||||||||||||||    
T  16230341 ttgttagaaagggaattatcttgttttactttgaaagtctatcccttggctttgttgttagaaagggaattatcttgt 16230418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 102 - 160
Target Start/End: Complemental strand, 16292261 - 16292204
Alignment:
Q  102 gctttctattatgtactctggagtctatcccttggctcaatttgttaaaaagggaatta 160  Q
    ||||||| ||||| ||| ||||||||||||||||||||| |||| ||||||||||||||    
T  16292261 gctttcttttatgaactttggagtctatcccttggctcagtttg-taaaaagggaatta 16292204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 143 - 219
Target Start/End: Original strand, 2551555 - 2551632
Alignment:
Q  143 ttgttaaaaagggaattaacttgtttctatttgcaggtctatcccttgactttgtt-ttagaaagggaattatcttgt 219  Q
    |||||| ||||||||||| |||||||   |||| | || ||||||||| ||||||| |||||||||||||||||||||    
T  2551555 ttgttagaaagggaattatcttgttttattttgaaagtttatcccttggctttgttgttagaaagggaattatcttgt 2551632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 143 - 219
Target Start/End: Original strand, 16230395 - 16230472
Alignment:
Q  143 ttgttaaaaagggaattaacttgtttctatttgcaggtctatcccttgactttgtt-ttagaaagggaattatcttgt 219  Q
    |||||| ||||||||||| |||||||   |||| | ||||||| |||| ||||||| |||||||||||||||||||||    
T  16230395 ttgttagaaagggaattatcttgttttactttgaaagtctatctcttggctttgttgttagaaagggaattatcttgt 16230472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 143 - 217
Target Start/End: Complemental strand, 16144948 - 16144873
Alignment:
Q  143 ttgttaaaaagggaattaacttgtttctatttgcaggtctatcccttgactttgtt-ttagaaagggaattatctt 217  Q
    |||||| ||||||||||| |||||||   |||| | || ||||||||| ||||||| |||||||||||||||||||    
T  16144948 ttgttagaaagggaattatcttgttttactttgaaagtttatcccttggctttgttgttagaaagggaattatctt 16144873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 143 - 219
Target Start/End: Original strand, 2551501 - 2551578
Alignment:
Q  143 ttgttaaaaagggaattaacttgtttctatttgcaggtctatcccttgactttgtt-ttagaaagggaattatcttgt 219  Q
    |||||| ||||||||||| |||||||   |||| | ||  |||||||| ||||||| |||||||||||||||||||||    
T  2551501 ttgttagaaagggaattatcttgttttactttgaaagttcatcccttggctttgttgttagaaagggaattatcttgt 2551578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 179 - 219
Target Start/End: Original strand, 15188119 - 15188160
Alignment:
Q  179 gtctatcccttgactttgtt-ttagaaagggaattatcttgt 219  Q
    |||||||||||| ||||||| |||||||||||||||||||||    
T  15188119 gtctatcccttggctttgttgttagaaagggaattatcttgt 15188160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 143 - 219
Target Start/End: Original strand, 15188192 - 15188269
Alignment:
Q  143 ttgttaaaaagggaattaacttgtttctatttgcaggtctatcccttgactttgtt-ttagaaagggaattatcttgt 219  Q
    |||||| ||||||||||| |||||||   |||| |  | ||||||||| ||||||| |||||||||||||||||||||    
T  15188192 ttgttagaaagggaattatcttgttttcctttgaaattttatcccttggctttgttgttagaaagggaattatcttgt 15188269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 191; Significance: 1e-104; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 6 - 244
Target Start/End: Original strand, 3679233 - 3679471
Alignment:
Q  6 atggacatcatggatttgtttgatagtgcacattcagattttgaggagtagtctgcttcaagagctcaagagctccctgtttgttttatcctttatgctt 105  Q
    |||||| |||||||||||||||||  ||||||||||||||| |||||||||||| |||||||||||||||| ||||| ||||||||||||||||||||||    
T  3679233 atggacttcatggatttgtttgatgatgcacattcagatttcgaggagtagtctacttcaagagctcaagaactccccgtttgttttatcctttatgctt 3679332  T
Q  106 tctattatgtactctggagtctatcccttggctcaatttgttaaaaagggaattaacttgtttctatttgcaggtctatcccttgactttgttttagaaa 205  Q
    || |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||    
T  3679333 tccattatgtactttggagtctatcccttggctcaatttgttaaaaagggaattaacttgtttctatttgtaggactatcccttgactttgttttagaaa 3679432  T
Q  206 gggaattatcttgtccaaggaaactttctgttatgatgt 244  Q
    |||||||||||||||||||||||||||| ||||||||||    
T  3679433 gggaattatcttgtccaaggaaactttcagttatgatgt 3679471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 6 - 244
Target Start/End: Original strand, 30015811 - 30016049
Alignment:
Q  6 atggacatcatggatttgtttgatagtgcacattcagattttgaggagtagtctgcttcaagagctcaagagctccctgtttgttttatcctttatgctt 105  Q
    |||||| ||||||||||||||||| |||||||||||||||| |||||||||||| |||||||||||||||| ||||| ||||||||||||||||||||||    
T  30015811 atggacttcatggatttgtttgatggtgcacattcagatttcgaggagtagtctacttcaagagctcaagaactccccgtttgttttatcctttatgctt 30015910  T
Q  106 tctattatgtactctggagtctatcccttggctcaatttgttaaaaagggaattaacttgtttctatttgcaggtctatcccttgactttgttttagaaa 205  Q
    || |||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| |||||||||||||||||||||||||    
T  30015911 tccattatgtactttggagtctatcccttggctcaatttgttaaaaagggagttaacttgtttctatttgtaggactatcccttgactttgttttagaaa 30016010  T
Q  206 gggaattatcttgtccaaggaaactttctgttatgatgt 244  Q
    |||||||||||||||||||||||||||| ||||||||||    
T  30016011 gggaattatcttgtccaaggaaactttcagttatgatgt 30016049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 32 - 219
Target Start/End: Complemental strand, 15598098 - 15597917
Alignment:
Q  32 tgcacattcagattttgaggagtagtctgcttcaagagctcaagagctccctgtttgttttatcctttatgctttctattatgtactctggagtctatcc 131  Q
    ||||||||||||||  |||||||||||| ||||||||||||||| | | ||  ||||||||||| |||||| |||    ||    || ||||||||||||    
T  15598098 tgcacattcagattccgaggagtagtctacttcaagagctcaagcgtttcccatttgttttatcttttatgtttt----tag---ctttggagtctatcc 15598006  T
Q  132 cttggctcaatttgttaaaaagggaattaacttgtttctatttgcaggtctatcccttgactttg-ttttagaaagggaattatcttgt 219  Q
    ||||||||||||||||||||||||||||| |||||||  ||||| | || ||||||||| ||||| |||||||||||||||||||||||    
T  15598005 cttggctcaatttgttaaaaagggaattatcttgttttaatttgtaagtttatcccttggctttgtttttagaaagggaattatcttgt 15597917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 110 - 219
Target Start/End: Original strand, 4438145 - 4438255
Alignment:
Q  110 ttatgtactctggagtctatcccttggctcaatttgttaaaaagggaattaacttgtttcta-tttgcaggtctatcccttgactttgtt-ttagaaagg 207  Q
    ||||||||| ||||||||||||||||||||| | |||| |||||||||||| || |||| || |||| | |||||||||||| ||||||| |||||||||    
T  4438145 ttatgtactttggagtctatcccttggctcagtctgtt-aaaagggaattatctggtttttactttgaaagtctatcccttggctttgttgttagaaagg 4438243  T
Q  208 gaattatcttgt 219  Q
    ||||||||||||    
T  4438244 gaattatcttgt 4438255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 110 - 219
Target Start/End: Complemental strand, 18879722 - 18879613
Alignment:
Q  110 ttatgtactctggagtctatcccttggctcaatttgttaaaaagggaattaacttgtttctatttgcaggtctatcccttgactttgtt-ttagaaaggg 208  Q
    ||||||||| |||||||| |||||||||||| | |||| |||||||||||| || ||||   |||| | |||||||||||| ||||||| ||||||||||    
T  18879722 ttatgtactttggagtctgtcccttggctcagtctgtt-aaaagggaattatctggttttactttgaaagtctatcccttggctttgttgttagaaaggg 18879624  T
Q  209 aattatcttgt 219  Q
    |||||||||||    
T  18879623 aattatcttgt 18879613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 120 - 219
Target Start/End: Complemental strand, 7094239 - 7094140
Alignment:
Q  120 tggagtctatcccttggctcaatttgttaaaaagggaattaacttgtttctatttgcaggtctatcccttgactttgtt-ttagaaagggaattatcttg 218  Q
    ||||||||||||||||||||| | |||| |||||||||||| |||||||   |||| | ||||||| |||| ||||||| ||||||||||||||||||||    
T  7094239 tggagtctatcccttggctcagtctgtt-aaaagggaattatcttgttttactttgaaagtctatctcttggctttgttgttagaaagggaattatcttg 7094141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 110 - 219
Target Start/End: Complemental strand, 5142089 - 5141980
Alignment:
Q  110 ttatgtactctggagtctatcccttggctcaatttgttaaaaagggaattaacttgtttctatttgcaggtctatcccttgactttgtt-ttagaaaggg 208  Q
    |||| |||| ||||||||||||||||||||| | |||| |||||||||||| |||||||   |||| | || |||| |||| ||||||| ||||||||||    
T  5142089 ttatttactttggagtctatcccttggctcagtctgtt-aaaagggaattatcttgttttactttgaaagtttatctcttggctttgttgttagaaaggg 5141991  T
Q  209 aattatcttgt 219  Q
    |||||||||||    
T  5141990 aattatcttgt 5141980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 110 - 219
Target Start/End: Complemental strand, 30073425 - 30073316
Alignment:
Q  110 ttatgtactctggagtctatcccttggctcaatttgttaaaaagggaattaacttgtttctatttgcaggtctatcccttgactttgtt-ttagaaaggg 208  Q
    ||||||| | |||||||||||||||| |||| |||||| |||||||||||| |||  || || ||  | |||||||||||| ||||||| ||||||||||    
T  30073425 ttatgtattttggagtctatcccttgactcagtttgtt-aaaagggaattatctttgttttactttaaagtctatcccttggctttgttgttagaaaggg 30073327  T
Q  209 aattatcttgt 219  Q
    |||||||||||    
T  30073326 aattatcttgt 30073316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 121 - 219
Target Start/End: Complemental strand, 24213813 - 24213715
Alignment:
Q  121 ggagtctatcccttggctcaatttgttaaaaagggaattaacttgtttctatttgcaggtctatcccttgactttgtt-ttagaaagggaattatcttgt 219  Q
    ||||||||||||||||||    |||||| ||||||||||| ||||||| | |||| | || ||||||||| ||||||| |||||||||||||||||||||    
T  24213813 ggagtctatcccttggct-ttgttgttagaaagggaattatcttgtttttctttgaaagtttatcccttggctttgttgttagaaagggaattatcttgt 24213715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 143 - 219
Target Start/End: Complemental strand, 11930577 - 11930500
Alignment:
Q  143 ttgttaaaaagggaattaacttgtttctatttgcaggtctatcccttgactttgtt-ttagaaagggaattatcttgt 219  Q
    |||||| ||||||||||| ||||||| | |||| | || ||||||||| ||||||| |||||||||||||||||||||    
T  11930577 ttgttagaaagggaattatcttgtttttctttgaaagtttatcccttggctttgttgttagaaagggaattatcttgt 11930500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 102 - 166
Target Start/End: Complemental strand, 6968629 - 6968566
Alignment:
Q  102 gctttctattatgtactctggagtctatcccttggctcaatttgttaaaaagggaattaacttgt 166  Q
    ||||||| ||||||||| ||||||||||||||||||||| ||||||  ||||||||||| |||||    
T  6968629 gctttcttttatgtactttggagtctatcccttggctcagtttgtt-gaaagggaattatcttgt 6968566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 121 - 219
Target Start/End: Original strand, 6566328 - 6566426
Alignment:
Q  121 ggagtctatcccttggctcaatttgttaaaaagggaattaacttgtttctatttgcaggtctatcccttgactttgtt-ttagaaagggaattatcttgt 219  Q
    ||||||||||||||||||    |||||| ||||||||||| || ||||   |||| | |||||||||||| ||||||| |||||||||||||||||||||    
T  6566328 ggagtctatcccttggct-ttgttgttagaaagggaattatctcgttttattttgaaagtctatcccttggctttgttgttagaaagggaattatcttgt 6566426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 102 - 160
Target Start/End: Original strand, 20438335 - 20438392
Alignment:
Q  102 gctttctattatgtactctggagtctatcccttggctcaatttgttaaaaagggaatta 160  Q
    ||||||| ||||| ||| ||||||||||||||||||||| |||| ||||||||||||||    
T  20438335 gctttcttttatgaactttggagtctatcccttggctcagtttg-taaaaagggaatta 20438392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 102 - 160
Target Start/End: Original strand, 41435500 - 41435557
Alignment:
Q  102 gctttctattatgtactctggagtctatcccttggctcaatttgttaaaaagggaatta 160  Q
    ||||||| ||||| ||| ||||||||||||||||||||| |||| ||||||||||||||    
T  41435500 gctttcttttatgaactttggagtctatcccttggctcagtttg-taaaaagggaatta 41435557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 143 - 219
Target Start/End: Original strand, 6566403 - 6566480
Alignment:
Q  143 ttgttaaaaagggaattaacttgtttctatttgcaggtctatcccttgactttgtt-ttagaaagggaattatcttgt 219  Q
    |||||| ||||||||||| |||||||   |||| | || ||||||||| ||||||| |||||||||||||||||||||    
T  6566403 ttgttagaaagggaattatcttgttttactttgaaagtttatcccttggctttgttgttagaaagggaattatcttgt 6566480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 115 - 219
Target Start/End: Original strand, 15699509 - 15699613
Alignment:
Q  115 tactctggagtctatcccttggctcaatttgttaaaaagggaattaacttgtttctatttgcaggtctatcccttgactttgtt-ttagaaagggaatta 213  Q
    |||| ||||||||  ||||||||||| | |||||||| |||||||| |||||||   |||| | |||||||| ||| ||||||| || ||||||||||||    
T  15699509 tactttggagtctgccccttggctcagtatgttaaaa-gggaattatcttgttttactttgaaagtctatcctttggctttgttgtttgaaagggaatta 15699607  T
Q  214 tcttgt 219  Q
    ||||||    
T  15699608 tcttgt 15699613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 143 - 219
Target Start/End: Original strand, 22954498 - 22954575
Alignment:
Q  143 ttgttaaaaagggaattaacttgtttctatttgcaggtctatcccttgactttgtt-ttagaaagggaattatcttgt 219  Q
    |||||| ||||||||||| ||||||| | |||| | || ||||||||| ||||||| |||||| ||||||||||||||    
T  22954498 ttgttagaaagggaattatcttgtttttctttgaaagtttatcccttggctttgttgttagaaggggaattatcttgt 22954575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0094 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 32 - 219
Target Start/End: Complemental strand, 40498 - 40316
Alignment:
Q  32 tgcacattcagattttgaggagtagtctgcttcaagagctcaagagctccctgtttgttttatcctttatgctttctattatgtactctggagtctatcc 131  Q
    ||||||||||||||  |||||||||||| ||||||||||||||| | | ||  ||||||||||| |||||| ||| ||       || ||||||||||||    
T  40498 tgcacattcagattccgaggagtagtctacttcaagagctcaagcgtttcccatttgttttatcttttatgttttttag------ctttggagtctatcc 40405  T
Q  132 cttggctcaatttgttaaaaagggaattaacttgtttctatttgcaggtctatcccttgactttg-ttttagaaagggaattatcttgt 219  Q
    ||||||||||||||||||||||||||||| |||||||  ||||| | || ||||||||| ||||| |||||||||||||||||||||||    
T  40404 cttggctcaatttgttaaaaagggaattatcttgttttaatttgtaagtttatcccttggctttgtttttagaaagggaattatcttgt 40316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 7e-24; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 104 - 219
Target Start/End: Original strand, 13454647 - 13454762
Alignment:
Q  104 tttctattatgtactctggagtctatcccttggctcaatttgttaaaaagggaattaacttgtttctatttgcaggtctatcccttgactttgtt-ttag 202  Q
    ||||| |||| |||| ||||||||||||||||||||| |||||| |||||||||||| |||||||   |||| | |||||||||||| ||||||| ||||    
T  13454647 tttctgttatttactttggagtctatcccttggctcagtttgtt-aaaagggaattatcttgttttactttgaaagtctatcccttggctttgttgttag 13454745  T
Q  203 aaagggaattatcttgt 219  Q
    |||||||||||||||||    
T  13454746 aaagggaattatcttgt 13454762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 120 - 219
Target Start/End: Original strand, 22475122 - 22475221
Alignment:
Q  120 tggagtctatcccttggctcaatttgttaaaaagggaattaacttgtttctatttgcaggtctatcccttgactttgtt-ttagaaagggaattatcttg 218  Q
    ||||||||||||||||||||| ||||||  ||||||||||| |||||||   |||| | || ||||||||| ||||||| ||||||||||||||||||||    
T  22475122 tggagtctatcccttggctcactttgtt-gaaagggaattatcttgttttattttgaaagtttatcccttggctttgttgttagaaagggaattatcttg 22475220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 104 - 219
Target Start/End: Original strand, 25770369 - 25770483
Alignment:
Q  104 tttctattatgtactctggagtctatcccttggctcaatttgttaaaaagggaattaacttgtttctatttgcaggtctatcccttgactttgtt-ttag 202  Q
    ||||| |||| |||| ||||||||||||||||||||| |||||| |||||||||||| |||||||   |||| | |||||||||||| ||||||| ||||    
T  25770369 tttctgttatttactttggagtctatcccttggctcagtttgtt-aaaagggaattatcttgttt-actttgaaagtctatcccttggctttgttgttag 25770466  T
Q  203 aaagggaattatcttgt 219  Q
    |||||||||||||||||    
T  25770467 aaagggaattatcttgt 25770483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 110 - 219
Target Start/End: Original strand, 19839237 - 19839346
Alignment:
Q  110 ttatgtactctggagtctatcccttggctcaatttgttaaaaagggaattaacttgtttctatttgcaggtctatcccttgactttgtt-ttagaaaggg 208  Q
    ||||||||| ||||||||||||||||||||| | |||| |||||||||||| || ||||   |||| | |||||||||||| ||||||| ||||||||||    
T  19839237 ttatgtactttggagtctatcccttggctcagtctgtt-aaaagggaattatctggttttactttgaaagtctatcccttggctttgttgttagaaaggg 19839335  T
Q  209 aattatcttgt 219  Q
    |||||||||||    
T  19839336 aattatcttgt 19839346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 143 - 219
Target Start/End: Original strand, 14207067 - 14207144
Alignment:
Q  143 ttgttaaaaagggaattaacttgtttctatttgcaggtctatcccttgactttgtt-ttagaaagggaattatcttgt 219  Q
    |||||| ||||||||||| ||||||| | |||| | || ||||||||| ||||||| |||||||||||||||||||||    
T  14207067 ttgttagaaagggaattatcttgtttttctttgaaagtttatcccttggctttgttgttagaaagggaattatcttgt 14207144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 143 - 219
Target Start/End: Original strand, 14207121 - 14207198
Alignment:
Q  143 ttgttaaaaagggaattaacttgtttctatttgcaggtctatcccttgactttgtt-ttagaaagggaattatcttgt 219  Q
    |||||| ||||||||||| ||||||| | |||| | || ||||||||| ||||||| |||||||||||||||||||||    
T  14207121 ttgttagaaagggaattatcttgtttttctttgaaagtttatcccttggctttgttgttagaaagggaattatcttgt 14207198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 219
Target Start/End: Original strand, 23918944 - 23918982
Alignment:
Q  182 tatcccttgactttgtt-ttagaaagggaattatcttgt 219  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  23918944 tatcccttgactttgttgttagaaagggaattatcttgt 23918982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 3e-20; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 110 - 219
Target Start/End: Complemental strand, 23980290 - 23980181
Alignment:
Q  110 ttatgtactctggagtctatcccttggctcaatttgttaaaaagggaattaacttgtttctatttgcaggtctatcccttgactttgtt-ttagaaaggg 208  Q
    ||||||||| ||||||||||||||||||||| | |||| |||||||||||| |||||||   |||| | ||||||| |||| ||||||| ||||||||||    
T  23980290 ttatgtactttggagtctatcccttggctcagtctgtt-aaaagggaattatcttgttttactttgaaagtctatctcttggctttgttgttagaaaggg 23980192  T
Q  209 aattatcttgt 219  Q
    |||||||||||    
T  23980191 aattatcttgt 23980181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 115 - 219
Target Start/End: Original strand, 25702179 - 25702283
Alignment:
Q  115 tactctggagtctatcccttggctcaatttgttaaaaagggaattaacttgtttctatttgcaggtctatcccttgactttgtt-ttagaaagggaatta 213  Q
    |||| ||||||||||||||||||||  | |||| |||||||||||| ||| |||   |||| | |||||||||||| ||||||| |||||||||||||||    
T  25702179 tactttggagtctatcccttggctcggtctgtt-aaaagggaattatcttattttactttgaaagtctatcccttggctttgttgttagaaagggaatta 25702277  T
Q  214 tcttgt 219  Q
    ||||||    
T  25702278 tcttgt 25702283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 121 - 219
Target Start/End: Original strand, 18114501 - 18114599
Alignment:
Q  121 ggagtctatcccttggctcaatttgttaaaaagggaattaacttgtttctatttgcaggtctatcccttgactttgtt-ttagaaagggaattatcttgt 219  Q
    |||||||||||||||| ||| |||||| ||| |||||||| |||||||   |||| | || || |||||| ||||||| |||||||||||||||||||||    
T  18114501 ggagtctatcccttggttcactttgttgaaa-gggaattatcttgttttattttgaaagtttaccccttggctttgttgttagaaagggaattatcttgt 18114599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 143 - 219
Target Start/End: Original strand, 18114576 - 18114653
Alignment:
Q  143 ttgttaaaaagggaattaacttgtttctatttgcaggtctatcccttgactttgtt-ttagaaagggaattatcttgt 219  Q
    |||||| ||||||||||| |||||||   |||| | || |||| |||| ||||||| |||||||||||||||||||||    
T  18114576 ttgttagaaagggaattatcttgttttattttgaaagtttatctcttggctttgttgttagaaagggaattatcttgt 18114653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 179 - 219
Target Start/End: Complemental strand, 18217725 - 18217684
Alignment:
Q  179 gtctatcccttgactttgtt-ttagaaagggaattatcttgt 219  Q
    |||||||||||| ||||||| |||||||||||||||||||||    
T  18217725 gtctatcccttggctttgttgttagaaagggaattatcttgt 18217684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 120 - 219
Target Start/End: Original strand, 85955 - 86054
Alignment:
Q  120 tggagtctatcccttggctcaatttgttaaaaagggaattaacttgtttctatttgcaggtctatcccttgactttgtt-ttagaaagggaattatcttg 218  Q
    ||||||||||||||||| ||| |||||| ||| |||||||| |||||||   |||| | |||||||||||| ||||||| ||||||||||||||||||||    
T  85955 tggagtctatcccttggttcactttgtttaaa-gggaattatcttgttttactttgaaagtctatcccttggctttgttgttagaaagggaattatcttg 86053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 143 - 219
Target Start/End: Original strand, 86031 - 86108
Alignment:
Q  143 ttgttaaaaagggaattaacttgtttctatttgcaggtctatcccttgactttgtt-ttagaaagggaattatcttgt 219  Q
    |||||| ||||||||||| |||||||   |||| | ||||||| |||| ||||||| |||||||||||||||||||||    
T  86031 ttgttagaaagggaattatcttgttttactttgaaagtctatctcttggctttgttgttagaaagggaattatcttgt 86108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 120 - 219
Target Start/End: Complemental strand, 14734552 - 14734453
Alignment:
Q  120 tggagtctatcccttggctcaatttgttaaaaagggaattaacttgtttctatttgcaggtctatcccttgactttgtt-ttagaaagggaattatcttg 218  Q
    ||||||||||||||||||||| | |||| |||||||||||| |||||||   |||| | ||||||| |||| ||||||| ||||||||||||||||||||    
T  14734552 tggagtctatcccttggctcagtctgtt-aaaagggaattatcttgttttactttgaaagtctatctcttggctttgttgttagaaagggaattatcttg 14734454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 104 - 219
Target Start/End: Original strand, 19762362 - 19762477
Alignment:
Q  104 tttctattatgtactctggagtctatcccttggctcaatttgttaaaaagggaattaacttgtttctatttgcaggtctatcccttgactttgtt-ttag 202  Q
    ||||| |||| ||||  |||||||||||||||||||| | |||| |||||||||||| |||||||   |||| | ||||||| |||| ||||||| ||||    
T  19762362 tttcttttatttacttgggagtctatcccttggctcagtctgtt-aaaagggaattatcttgttttactttgaaagtctatctcttggctttgttgttag 19762460  T
Q  203 aaagggaattatcttgt 219  Q
    |||||||||||||||||    
T  19762461 aaagggaattatcttgt 19762477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 102 - 219
Target Start/End: Complemental strand, 17302906 - 17302793
Alignment:
Q  102 gctttctattatgtactctggagtctatcccttggctcaatttgttaaaaagggaattaacttgtttctatttgcaggtctatcccttgactttgtt-tt 200  Q
    ||||||| ||||||||| ||||||||||||||||||||| |||| |||||| ||||||| |||       |||| | |||||||||||| ||||||| ||    
T  17302906 gctttctgttatgtactttggagtctatcccttggctcagtttggtaaaaaaggaattatctt-----actttgtaagtctatcccttggctttgttgtt 17302812  T
Q  201 agaaagggaattatcttgt 219  Q
    |||||| ||||||||||||    
T  17302811 agaaagagaattatcttgt 17302793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 120 - 219
Target Start/End: Complemental strand, 22151762 - 22151663
Alignment:
Q  120 tggagtctatcccttggctcaatttgttaaaaagggaattaacttgtttctatttgcaggtctatcccttgactttgtt-ttagaaagggaattatcttg 218  Q
    |||||||||||||||| |||| |||||| ||| |||||||| |||||||   |||| | || ||||||||| ||||||| ||||||||||||||||||||    
T  22151762 tggagtctatcccttgactcactttgtttaaa-gggaattatcttgttttattttgaaagtttatcccttggctttgttgttagaaagggaattatcttg 22151664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 143 - 219
Target Start/End: Original strand, 10789265 - 10789342
Alignment:
Q  143 ttgttaaaaagggaattaacttgtttctatttgcaggtctatcccttgactttgtt-ttagaaagggaattatcttgt 219  Q
    |||||| ||||||||||| ||||||| | |||| | || ||||||||| ||||||| |||||||||||||||||||||    
T  10789265 ttgttagaaagggaattatcttgtttttctttgaaagtttatcccttggctttgttgttagaaagggaattatcttgt 10789342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 121 - 219
Target Start/End: Original strand, 10789190 - 10789288
Alignment:
Q  121 ggagtctatcccttggctcaatttgttaaaaagggaattaacttgtttctatttgcaggtctatcccttgactttgtt-ttagaaagggaattatcttgt 219  Q
    ||||||||||||||||||    |||||| ||||||||||| |||||||   |||| | || ||||||||| ||||||| |||||||||||||||||||||    
T  10789190 ggagtctatcccttggct-ttgttgttagaaagggaattatcttgttttattttgaaagtttatcccttggctttgttgttagaaagggaattatcttgt 10789288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 110 - 219
Target Start/End: Complemental strand, 1887242 - 1887136
Alignment:
Q  110 ttatgtactctggagtctatcccttggctcaatttgttaaaaagggaattaacttgtttctatttgcaggtctatcccttgactttgtt-ttagaaaggg 208  Q
    ||||||||| |||||||||||||||||||||  ||||| |||||||||||| ||| || |  |||| | || || |||||| ||||||| ||||||||||    
T  1887242 ttatgtactttggagtctatcccttggctcaggttgtt-aaaagggaattatctt-ttac--tttgaaagtttaccccttggctttgttgttagaaaggg 1887147  T
Q  209 aattatcttgt 219  Q
     ||||||||||    
T  1887146 gattatcttgt 1887136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 121 - 219
Target Start/End: Original strand, 42388574 - 42388672
Alignment:
Q  121 ggagtctatcccttggctcaatttgttaaaaagggaattaacttgtttctatttgcaggtctatcccttgactttgtt-ttagaaagggaattatcttgt 219  Q
    |||||||||||||||||||| ||||||  ||||||||||| |||||||   |||| | || ||||||||| ||||||| |||||||||||||||||||||    
T  42388574 ggagtctatcccttggctcattttgtt-gaaagggaattatcttgttttattttgaaagtttatcccttggctttgttgttagaaagggaattatcttgt 42388672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 120 - 174
Target Start/End: Complemental strand, 21765471 - 21765418
Alignment:
Q  120 tggagtctatcccttggctcaatttgttaaaaagggaattaacttgtttctattt 174  Q
    ||||||||||||||||||||| ||||| ||||||||||||| |||||||||||||    
T  21765471 tggagtctatcccttggctcagtttgt-aaaaagggaattatcttgtttctattt 21765418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 143 - 219
Target Start/End: Original strand, 42388649 - 42388726
Alignment:
Q  143 ttgttaaaaagggaattaacttgtttctatttgcaggtctatcccttgactttgtt-ttagaaagggaattatcttgt 219  Q
    |||||| ||||||||||| |||||||   |||| | || ||||||||| ||||||| |||||||||||||||||||||    
T  42388649 ttgttagaaagggaattatcttgttttactttgaaagtttatcccttggctttgttgttagaaagggaattatcttgt 42388726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0632 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0632
Description:

Target: scaffold0632; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 110 - 219
Target Start/End: Original strand, 9092 - 9201
Alignment:
Q  110 ttatgtactctggagtctatcccttggctcaatttgttaaaaagggaattaacttgtttctatttgcaggtctatcccttgactttgtt-ttagaaaggg 208  Q
    ||||||| | |||||||||||||||| |||| |||||| |||||||||||| |||  || || ||  | |||||||||||| ||||||| ||||||||||    
T  9092 ttatgtattttggagtctatcccttgactcagtttgtt-aaaagggaattatctttgttttactttaaagtctatcccttggctttgttgttagaaaggg 9190  T
Q  209 aattatcttgt 219  Q
    |||||||||||    
T  9191 aattatcttgt 9201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 13 - 59
Target Start/End: Complemental strand, 184401 - 184355
Alignment:
Q  13 tcatggatttgtttgatagtgcacattcagattttgaggagtagtct 59  Q
    ||||||||||||||||| |||||||||||||||| ||||||||||||    
T  184401 tcatggatttgtttgatggtgcacattcagatttcgaggagtagtct 184355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0782 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0782
Description:

Target: scaffold0782; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 105 - 174
Target Start/End: Original strand, 5759 - 5827
Alignment:
Q  105 ttctattatgtactctggagtctatcccttggctcaatttgttaaaaagggaattaacttgtttctattt 174  Q
    ||||| |||| ||| ||||||||||||||||||||| |||| |||||||||||||| ||||||| |||||    
T  5759 ttctagtatgaactttggagtctatcccttggctcagtttg-taaaaagggaattatcttgtttttattt 5827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0545 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0545
Description:

Target: scaffold0545; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 110 - 219
Target Start/End: Complemental strand, 5377 - 5267
Alignment:
Q  110 ttatgtactctggagtctatcccttggctcaatttgttaaaaagggaattaacttgtttctatttgcag--gtctatcccttgactttgtt-ttagaaag 206  Q
    ||||||||| |||||||| |||||||||||| | |||||||| |||||||| || |||| || ||| |   |||||||||||| ||||||| ||||||||    
T  5377 ttatgtactttggagtctgtcccttggctcattctgttaaaa-gggaattatct-gtttttacttggaaaagtctatcccttggctttgttgttagaaag 5280  T
Q  207 ggaattatcttgt 219  Q
    |||||||||||||    
T  5279 ggaattatcttgt 5267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 219
Target Start/End: Original strand, 301101 - 301149
Alignment:
Q  172 tttgcaggtctatcccttgactttgtt-ttagaaagggaattatcttgt 219  Q
    |||| |||||||||||||| ||||||| |||||||||||||||||||||    
T  301101 tttgtaggtctatcccttggctttgttgttagaaagggaattatcttgt 301149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0046 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0046
Description:

Target: scaffold0046; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 179 - 219
Target Start/End: Original strand, 40371 - 40412
Alignment:
Q  179 gtctatcccttgactttgtt-ttagaaagggaattatcttgt 219  Q
    |||||||||||| ||||||| |||||||||||||||||||||    
T  40371 gtctatcccttggctttgttgttagaaagggaattatcttgt 40412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University