View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6911_low_33 (Length: 249)
Name: NF6911_low_33
Description: NF6911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6911_low_33 |
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Alignment Details
Target: chr3 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 42748610 - 42748372
Alignment:
| Q |
1 |
tagatttcaaattaaaagcatcaatattattcccaatatgacagcttttattgcatattcaaattcaaatagataacaatgctgcagcctgcaagtctgc |
100 |
Q |
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| T |
42748610 |
tagatttcaaattaaaagcatcaatattattcccaatatgacagcttttattgcatattcaaattcaaatacataacaatgctgcagcctgcaagtctgc |
42748511 |
T |
|
| Q |
101 |
aacgtagagacctatgtagcaccaacgcttctaattgatggcgtgtaagatgtctgacaccaacacatgtgattaaattcaactattctgttttctcaga |
200 |
Q |
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| T |
42748510 |
aacgtagagacctatgtagcaccaacgcttctaattgatggcgtgtaagatgtctgacaccaacacatgtgattaaattcaactattctgttttctcaga |
42748411 |
T |
|
| Q |
201 |
ttattactagtgtcgatgtgtaagtgtgtattgatgtcc |
239 |
Q |
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| T |
42748410 |
ttattactagtgtcgatgtgtaagtgtgtattgatgtcc |
42748372 |
T |
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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 199
Target Start/End: Original strand, 10038440 - 10038488
Alignment:
| Q |
151 |
tgtctgacaccaacacatgtgattaaattcaactattctgttttctcag |
199 |
Q |
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| T |
10038440 |
tgtcggacaccaacacatgtgattatattcaattattctattttctcag |
10038488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 156 - 215
Target Start/End: Complemental strand, 3451913 - 3451854
Alignment:
| Q |
156 |
gacaccaacacatgtgattaaattcaactattctgttttctcagattattactagtgtcg |
215 |
Q |
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| T |
3451913 |
gacaccaacacatgtgattaaattcaattaattcgttttctcaaattattatcagtgtcg |
3451854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 221
Target Start/End: Complemental strand, 28322298 - 28322234
Alignment:
| Q |
157 |
acaccaacacatgtgattaaattcaactattctgttttctcagattattactagtgtcgatgtgt |
221 |
Q |
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| T |
28322298 |
acaccaacacatgtgattacattcaattaattcattttctcaaattatcactagtgtcgacgtgt |
28322234 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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