View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6911_low_34 (Length: 248)
Name: NF6911_low_34
Description: NF6911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6911_low_34 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 13652843 - 13653078
Alignment:
| Q |
1 |
ctgttgcatggaggatggcggagcacccaagaacccgattatcagtggttcgaatggtcctgttagatgtagctgctgaagtagatactaaaagtcataa |
100 |
Q |
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| T |
13652843 |
ctgttgcatggaggatggcggagcacccaagaactcgattatcagtggttcgaatgctcctgttagatgtagctgctgaagtagacactaaaagtcataa |
13652942 |
T |
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| Q |
101 |
tgaaacacaaggagtattatctgttgtaatggataatgagaagcagaaggatctagacgaagaatatgtaaattcatttagacttaaagcagtgaataac |
200 |
Q |
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| T |
13652943 |
tgaaacacaaggagtattatctgttgtaatggataatgagaagcagaaggatctagacgaagaatatgtaaattcatttagactgaaagcagtgaataac |
13653042 |
T |
|
| Q |
201 |
aatgattttatatcctattcagaggttgatgtccat |
236 |
Q |
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| T |
13653043 |
aatgattttatatcctattcagaggttgatgtccat |
13653078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 13660343 - 13660578
Alignment:
| Q |
1 |
ctgttgcatggaggatggcggagcacccaagaacccgattatcagtggttcgaatggtcctgttagatgtagctgctgaagtagatactaaaagtcataa |
100 |
Q |
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| T |
13660343 |
ctgttgcatggaggatggtggggcacccaggaacccgattatcattggttcggatgctcttgtttgacgaagcagccgaagtaaatattataagtcatta |
13660442 |
T |
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| Q |
101 |
tgaaacacaaggagtattatctgttgtaatggataatgagaagcagaaggatctagacgaagaatatgtaaattcatttagacttaaagcagtgaataac |
200 |
Q |
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| T |
13660443 |
tgaagtacaaggcatattatctgttgtaatggataatgagaagcagaaggatctagacgaagaatatgtaaattcatttagactgaaagcagtgaataac |
13660542 |
T |
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| Q |
201 |
aatgattttatatcctattcagaggttgatgtccat |
236 |
Q |
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| T |
13660543 |
aatgattctatatcatattcggaggttgatgtccat |
13660578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 31 - 236
Target Start/End: Complemental strand, 437902 - 437697
Alignment:
| Q |
31 |
gaacccgattatcagtggttcgaatggtcctgttagatgtagctgctgaagtagatactaaaagtcataatgaaacacaaggagtattatctgttgtaat |
130 |
Q |
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| T |
437902 |
gaacccaattatcagtggttcggatgctcctgtttgataatgctgaaatagtagacacctcaagtcatgctgaaccacaagggatactatctattgtaat |
437803 |
T |
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| Q |
131 |
ggataatgagaagcagaaggatctagacgaagaatatgtaaattcatttagacttaaagcagtgaataacaatgattttatatcctattcagaggttgat |
230 |
Q |
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| T |
437802 |
ggatagtgagaagcagaaggagttagatgatgagtatgtgaatggatttagattgacagcgatgaacaacaatgattctatatcttattcagaagttaat |
437703 |
T |
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| Q |
231 |
gtccat |
236 |
Q |
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|||||| |
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| T |
437702 |
gtccat |
437697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 115 - 236
Target Start/End: Original strand, 28609086 - 28609207
Alignment:
| Q |
115 |
tattatctgttgtaatggataatgagaagcagaaggatctagacgaagaatatgtaaattcatttagacttaaagcagtgaataacaatgattttatatc |
214 |
Q |
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|||||||| |||||||||||| ||||||||| ||||| |||| || || ||||| ||| ||||||| | | | | |||| |||||||||| |||||| |
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| T |
28609086 |
tattatctattgtaatggatagtgagaagcaaaaggaattagatgatgagtatgttaatggatttagattgacaacgatgaacaacaatgattctatatc |
28609185 |
T |
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| Q |
215 |
ctattcagaggttgatgtccat |
236 |
Q |
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|||||||| |||||||||||| |
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| T |
28609186 |
ttattcagaagttgatgtccat |
28609207 |
T |
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