View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6911_low_36 (Length: 245)

Name: NF6911_low_36
Description: NF6911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6911_low_36
NF6911_low_36
[»] chr3 (4 HSPs)
chr3 (1-232)||(11897154-11897405)
chr3 (73-232)||(26432588-26432747)
chr3 (1-71)||(26432769-26432839)
chr3 (77-131)||(23424600-23424654)
[»] chr8 (2 HSPs)
chr8 (1-232)||(23132475-23132726)
chr8 (79-227)||(14760026-14760174)
[»] chr2 (5 HSPs)
chr2 (1-232)||(14653570-14653821)
chr2 (77-128)||(35062956-35063007)
chr2 (79-125)||(35135219-35135265)
chr2 (79-125)||(40328279-40328325)
chr2 (71-128)||(573285-573342)
[»] chr1 (1 HSPs)
chr1 (1-232)||(20284855-20285106)
[»] scaffold0036 (1 HSPs)
scaffold0036 (77-128)||(76006-76057)
[»] chr4 (1 HSPs)
chr4 (79-125)||(54477407-54477453)
[»] chr6 (2 HSPs)
chr6 (77-131)||(24893833-24893887)
chr6 (77-131)||(24990660-24990714)


Alignment Details
Target: chr3 (Bit Score: 167; Significance: 1e-89; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 11897154 - 11897405
Alignment:
Q  1 ccatcaagctcatcatgcattgcgtagcttctccgagttactctatactttggaatgggaacaagttgccgcct--------------------ccgaca 80  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||                    ||||||    
T  11897154 ccatcaagctcatcatgcattgcgtagcttctcctagttactctatactttggaacgggaacaagttgccgcctttcaagccttctcatggcctccgaca 11897253  T
Q  81 aggtgatccgttgtccccttatcttttcatcctttgcatggaaaagctttcagctgctataaactcagcagtcgcccaaggaagatgggcacccatccaa 180  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| |||||||||||||||||||||||||    
T  11897254 aggtgatccgttgtccccttatcttttcatcctttgcatggaaaagctttcagctactatcaactcagcagtcgtccaaggaagatgggcacccatccaa 11897353  T
Q  181 atcacccctacggggccgcatttatcccatctcctatttgcagatgatgtcc 232  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11897354 atcacccctacggggccgcatttatcccatctcctatttgcagatgatgtcc 11897405  T

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Target: chr3; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 73 - 232
Target Start/End: Complemental strand, 26432747 - 26432588
Alignment:
Q  73 ctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagctttcagctgctataaactcagcagtcgcccaaggaagatgggcac 172  Q
    ||||||||||||||||| |||||||||||||| |||||| |||||||||||||||| || |||||||| ||||| || ||| ||||||||||||||| ||    
T  26432747 ctccgacaaggtgatccattgtccccttatctcttcatcatttgcatggaaaagctatccgctgctatcaactccgccgtcacccaaggaagatgggaac 26432648  T
Q  173 ccatccaaatcacccctacggggccgcatttatcccatctcctatttgcagatgatgtcc 232  Q
    | || |||||||| ||||||||||||||||||||||| ||||| |||||| |||||||||    
T  26432647 cgattcaaatcactcctacggggccgcatttatcccacctcctttttgcaaatgatgtcc 26432588  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 26432839 - 26432769
Alignment:
Q  1 ccatcaagctcatcatgcattgcgtagcttctccgagttactctatactttggaatgggaacaagttgccg 71  Q
    ||||||| |||||||||||||| ||  ||||  | |  |||||||||||||||||||||||||||||||||    
T  26432839 ccatcaaactcatcatgcattgtgtctcttcatcaaactactctatactttggaatgggaacaagttgccg 26432769  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 131
Target Start/End: Original strand, 23424600 - 23424654
Alignment:
Q  77 gacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagctttc 131  Q
    |||||||||| ||| | || |||||||||||||| || |||||||||||||||||    
T  23424600 gacaaggtgacccgctctctccttatcttttcatactatgcatggaaaagctttc 23424654  T

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Target: chr8 (Bit Score: 163; Significance: 4e-87; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 23132726 - 23132475
Alignment:
Q  1 ccatcaagctcatcatgcattgcgtagcttctccgagttactctatactttggaatgggaacaagttgccgcct--------------------ccgaca 80  Q
    |||||||| ||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||                    ||||||    
T  23132726 ccatcaagttcatcatgcattgcgtagcttctcctagttactctatactttggaacgggaacaagttgccgcctttcaagccttctcatggcctccgaca 23132627  T
Q  81 aggtgatccgttgtccccttatcttttcatcctttgcatggaaaagctttcagctgctataaactcagcagtcgcccaaggaagatgggcacccatccaa 180  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  23132626 aggtgatacgttgtccccttatcttttcatcctttgcatggaaaagctttcagctgctatcaactcagcagtcgcccaaggaagatgggcacccatccaa 23132527  T
Q  181 atcacccctacggggccgcatttatcccatctcctatttgcagatgatgtcc 232  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  23132526 atcacccctacggggccccatttatcccatctcctatttgcagatgatgtcc 23132475  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 79 - 227
Target Start/End: Original strand, 14760026 - 14760174
Alignment:
Q  79 caaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagctttcagctgctataaactcagcagtcgcccaaggaagatgggcacccatcc 178  Q
    ||||| |||||||||||||| || || ||||| ||||| ||||||||||| ||   ||||||||| ||||| |||   |||||||| |||| |||  | |    
T  14760026 caaggagatccgttgtccccatacctcttcattctttgtatggaaaagctctctattgctataaattcagcggtcaatcaaggaagttgggaaccggttc 14760125  T
Q  179 aaatcacccctacggggccgcatttatcccatctcctatttgcagatga 227  Q
    |||||||   ||||||||| ||  |||| || || ||||||||||||||    
T  14760126 aaatcacaaatacggggccccagatatctcacctactatttgcagatga 14760174  T

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Target: chr2 (Bit Score: 163; Significance: 4e-87; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 14653821 - 14653570
Alignment:
Q  1 ccatcaagctcatcatgcattgcgtagcttctccgagttactctatactttggaatgggaacaagttgccgcct--------------------ccgaca 80  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                    || |||    
T  14653821 ccatcaagctcatcatgcattgcgtagcttctccgagttactctatactttggaatgggaacaagttgccgcctttcaagccttctcatggcctccaaca 14653722  T
Q  81 aggtgatccgttgtccccttatcttttcatcctttgcatggaaaagctttcagctgctataaactcagcagtcgcccaaggaagatgggcacccatccaa 180  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||| || |||||||||||||||||||| |||||||||||||||||||||||||||    
T  14653721 aggtgatccgttgtccccttattttttcatcctttgcatggaaaagctatccgctgctataaactcagcagttgcccaaggaagatgggcacccatccaa 14653622  T
Q  181 atcacccctacggggccgcatttatcccatctcctatttgcagatgatgtcc 232  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  14653621 atcactcctacggggccgcatttatcccatctcctatttgcagatgatgtcc 14653570  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 77 - 128
Target Start/End: Complemental strand, 35063007 - 35062956
Alignment:
Q  77 gacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagct 128  Q
    |||||||||||||  | ||||| ||||||||||||||||| |||||||||||    
T  35063007 gacaaggtgatccactatccccctatcttttcatcctttgtatggaaaagct 35062956  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 125
Target Start/End: Complemental strand, 35135265 - 35135219
Alignment:
Q  79 caaggtgatccgttgtccccttatcttttcatcctttgcatggaaaa 125  Q
    |||||||| |||||||| ||||||||||||||||| || ||||||||    
T  35135265 caaggtgacccgttgtctccttatcttttcatcctatgtatggaaaa 35135219  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 125
Target Start/End: Original strand, 40328279 - 40328325
Alignment:
Q  79 caaggtgatccgttgtccccttatcttttcatcctttgcatggaaaa 125  Q
    |||||||| |||||||| ||||||||||||||||| || ||||||||    
T  40328279 caaggtgacccgttgtctccttatcttttcatcctatgtatggaaaa 40328325  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 71 - 128
Target Start/End: Original strand, 573285 - 573342
Alignment:
Q  71 gcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagct 128  Q
    ||||| |||||||||||||| | || ||||| || ||||||||||||||||| |||||    
T  573285 gcctcagacaaggtgatccgctctctccttacctattcatcctttgcatggagaagct 573342  T

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Target: chr1 (Bit Score: 159; Significance: 9e-85; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 20284855 - 20285106
Alignment:
Q  1 ccatcaagctcatcatgcattgcgtagcttctccgagttactctatactttggaatgggaacaagttgccgcctc--------------------cgaca 80  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||   ||||||||||                     |||||    
T  20284855 ccatcaagctcatcatgcattgcgtagcttctcctagttactctatactttggaacgggaaagggttgccgcctttcgagccttctcatggcctgcgaca 20284954  T
Q  81 aggtgatccgttgtccccttatcttttcatcctttgcatggaaaagctttcagctgctataaactcagcagtcgcccaaggaagatgggcacccatccaa 180  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  20284955 aggtgatccgttgtccccttatcttttcatcctttgcatggaaaagctttcagctgctatcaactcagcagtcgcccaaggaagatgggcacccatccaa 20285054  T
Q  181 atcacccctacggggccgcatttatcccatctcctatttgcagatgatgtcc 232  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20285055 atcacccctacggggccgcatttatcccatctcctatttgcagatgatgtcc 20285106  T

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Target: scaffold0036 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 77 - 128
Target Start/End: Original strand, 76006 - 76057
Alignment:
Q  77 gacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagct 128  Q
    |||||||||| | |||||||||||||||||||||||||||||||||||||||    
T  76006 gacaaggtgaccagttgtccccttatcttttcatcctttgcatggaaaagct 76057  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 79 - 125
Target Start/End: Complemental strand, 54477453 - 54477407
Alignment:
Q  79 caaggtgatccgttgtccccttatcttttcatcctttgcatggaaaa 125  Q
    ||||||||||| |||||||||||||| ||||| ||||||||||||||    
T  54477453 caaggtgatcctttgtccccttatctcttcattctttgcatggaaaa 54477407  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 131
Target Start/End: Complemental strand, 24893887 - 24893833
Alignment:
Q  77 gacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagctttc 131  Q
    |||||||||| ||| | || |||||||||||||| || |||||||||||||||||    
T  24893887 gacaaggtgacccgctctctccttatcttttcatactatgcatggaaaagctttc 24893833  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 131
Target Start/End: Complemental strand, 24990714 - 24990660
Alignment:
Q  77 gacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagctttc 131  Q
    |||||||||| ||| | || |||||||||||||| ||||||||||| ||||||||    
T  24990714 gacaaggtgacccgctctctccttatcttttcattctttgcatggagaagctttc 24990660  T

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