View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6911_low_43 (Length: 222)
Name: NF6911_low_43
Description: NF6911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6911_low_43 |
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| [»] chr3 (2 HSPs) |
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| [»] scaffold0172 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 1482995 - 1483216
Alignment:
| Q |
1 |
cattttttagggtttatatttaattggtcgatgtgtgtgacatatactctggtcaggttcggcaatccttacagaagaattatcatttaaaggtatgtgt |
100 |
Q |
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| T |
1482995 |
cattttttagggtttatatttaattggtcgatgtgtgtgacatatactctggtcaggttcggcaatccttacagaagaattatcatttaaaggtatgtgt |
1483094 |
T |
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| Q |
101 |
tgaatttcttcttcacttgtactagtaaatattgcatgatctgattattgctgatgtgtaatgtcgaattcattagatgttaaaagcaatgtcccttctg |
200 |
Q |
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| T |
1483095 |
tgaatttcttcttcacttgtactagtaaatattgcatgatctgattattgctgatgtgtaatgtagaattcattagatgttaaaagcaatgtcccttctg |
1483194 |
T |
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| Q |
201 |
taggagttttttctactatcaa |
222 |
Q |
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| T |
1483195 |
taggagttttttctactatcaa |
1483216 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 34 - 202
Target Start/End: Original strand, 1442737 - 1442902
Alignment:
| Q |
34 |
tgtgtgacatatactctggtcaggttcggcaatccttacagaagaattatcatttaaaggtatgtgttgaatttcttcttcacttgtactagtaaatatt |
133 |
Q |
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| T |
1442737 |
tgtgtggcatatacactggtcaggttcgacaaaacttacaaaagaattatcacttacaggtatgtgttgaatttcttcttcacttgtactagtaaatgtt |
1442836 |
T |
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| Q |
134 |
gcatgatctgattattgctgatgtgtaatgtcgaattcattagatgttaaaagcaatgtcccttctgta |
202 |
Q |
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| T |
1442837 |
ac---ttctgattattgctgatgtgtaatgtagaatccattagatgttaaaatcaatgtctcttctgta |
1442902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0172 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0172
Description:
Target: scaffold0172; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 49 - 95
Target Start/End: Complemental strand, 31730 - 31684
Alignment:
| Q |
49 |
ctggtcaggttcggcaatccttacagaagaattatcatttaaaggta |
95 |
Q |
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| T |
31730 |
ctggtcaagttcggcaatccttacagaagaaatatcacttaaaggta |
31684 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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