View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6911_low_44 (Length: 220)
Name: NF6911_low_44
Description: NF6911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6911_low_44 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 216; Significance: 1e-119; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 1483447 - 1483228
Alignment:
| Q |
1 |
atttataagctttgaaaacaggtccttttattatatatttcccttttaagatcttctctgagcttcttttcttaaacttccaatagaagcaccaaaacaa |
100 |
Q |
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| T |
1483447 |
atttataagctttgaaaacaggtccttttattatatatttcccttttaagatcttctctgagcttcttttcttaaacttccaatagaagcaccaaaacaa |
1483348 |
T |
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| Q |
101 |
ttttattccggaaaacctcattattcattaaatagctcttttaacatgtttttagaccagtgggtgcattcttgttaactttcaaatctagaagtttaag |
200 |
Q |
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| T |
1483347 |
ttttattccggaaaacctcattattcattaaatagctcttttaacatgtttttagaccagtgggtacattcttgttaactttcaaatctagaagtttaag |
1483248 |
T |
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| Q |
201 |
atatgcatgtattacaacat |
220 |
Q |
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| T |
1483247 |
atatgcatgtattacaacat |
1483228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 2 - 109
Target Start/End: Complemental strand, 1443230 - 1443124
Alignment:
| Q |
2 |
tttataagctttgaaaacaggtccttttattatatatttcccttttaagatcttctctgagcttcttttcttaaacttccaatagaagcaccaaaacaat |
101 |
Q |
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|||||||| |||||||||| || ||| ||||||||||||| |||| |||| ||| ||| |||||||||||||||||||| ||| ||||| |||||||| |
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| T |
1443230 |
tttataaggtttgaaaacaagtgcttctattatatatttctcttt-aagaacttttctaagcttcttttcttaaacttcagataaaagcagtaaaacaat |
1443132 |
T |
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| Q |
102 |
tttattcc |
109 |
Q |
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| T |
1443131 |
tttattcc |
1443124 |
T |
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