View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6911_low_47 (Length: 208)
Name: NF6911_low_47
Description: NF6911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6911_low_47 |
 | |
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| [»] chr3 (4 HSPs) |
| |
|
| [»] chr8 (1 HSPs) |
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| [»] chr7 (2 HSPs) |
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| [»] chr2 (4 HSPs) |
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| [»] scaffold0051 (1 HSPs) |
| | |
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| [»] scaffold0897 (1 HSPs) |
| | |
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| [»] scaffold0319 (1 HSPs) |
| | |
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| [»] scaffold0040 (1 HSPs) |
| | |
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| [»] scaffold0304 (2 HSPs) |
| | |
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| [»] scaffold0108 (1 HSPs) |
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| [»] scaffold0064 (1 HSPs) |
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| [»] scaffold0022 (1 HSPs) |
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| [»] scaffold0107 (1 HSPs) |
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| [»] scaffold0016 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 176; Significance: 5e-95; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 10787043 - 10787250
Alignment:
| Q |
1 |
agggtgataacctcgatagttacgtctcaatccatccccgtgacagttgtgccagttgttgcaaaatcgacggcgaaccaaccgaggaggcagtaatctc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
10787043 |
agggtgataacctcgatagttacgtctcaatccatccccgtgacagttgtgccagttattacaaaatcgacggcgaaccaactgaggaggcagtaatctt |
10787142 |
T |
|
| Q |
101 |
ttgtaccagcctaaaacgaagcggaaacgggtgtccccgcctgttatctctctgcgatagcgcgcgacgtttcttgtctccaaaagagacaagaaatcat |
200 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| ||||||||| |
|
|
| T |
10787143 |
ttgtaccagcctgaaacgaagcggaaacgggtgtccccgcctgttatctctctgcgatagcgcgcaacgttttttgtctccaaaagagaccagaaatcat |
10787242 |
T |
|
| Q |
201 |
gaaaaagt |
208 |
Q |
| |
|
|||||||| |
|
|
| T |
10787243 |
gaaaaagt |
10787250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 156; E-Value: 4e-83
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 14688750 - 14688543
Alignment:
| Q |
1 |
agggtgataacctcgatagttacgtctcaatccatccccgtgacagttgtgccagttgttgcaaaatcgacggcgaaccaaccgaggaggcagtaatctc |
100 |
Q |
| |
|
||||||||| ||||||||||| |||||||||||||||||| | |||||||||||||||||||| |||||||| || ||||||||||||||||||||||| |
|
|
| T |
14688750 |
agggtgatagcctcgatagttgcgtctcaatccatccccgcgccagttgtgccagttgttgcagaatcgacgacggaccaaccgaggaggcagtaatctt |
14688651 |
T |
|
| Q |
101 |
ttgtaccagcctaaaacgaagcggaaacgggtgtccccgcctgttatctctctgcgatagcgcgcgacgtttcttgtctccaaaagagacaagaaatcat |
200 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| | ||||||| |
|
|
| T |
14688650 |
ttgtaccagcctgaaacgaagcggaaacgggtgtccccgcccgttatatctctgcgatagcgcgcgacgtttcttgtctccaaaagagaccaaaaatcat |
14688551 |
T |
|
| Q |
201 |
gaaaaagt |
208 |
Q |
| |
|
|||||||| |
|
|
| T |
14688550 |
gaaaaagt |
14688543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 7360752 - 7360545
Alignment:
| Q |
1 |
agggtgataacctcgatagttacgtctcaatccatccccgtgacagttgtgccagttgttgcaaaatcgacggcgaaccaaccgaggaggcagtaatctc |
100 |
Q |
| |
|
||||||||| ||||||||||||||||||||| |||||||| |||||||||||||||||||||| |||||||| || | ||||||||||||||||||||| |
|
|
| T |
7360752 |
agggtgatagcctcgatagttacgtctcaatacatccccgcgacagttgtgccagttgttgcagaatcgacgacggatcaaccgaggaggcagtaatctt |
7360653 |
T |
|
| Q |
101 |
ttgtaccagcctaaaacgaagcggaaacgggtgtccccgcctgttatctctctgcgatagcgcgcgacgtttcttgtctccaaaagagacaagaaatcat |
200 |
Q |
| |
|
|| ||||||||| ||||||| |||||| ||||||| |||||||||| ||||| ||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
7360652 |
ttataccagcctgaaacgaaacggaaagaggtgtccacgcctgttatgtctctacgatagcgcgcgacgtttcgtgtctccaaaagagacaagaaatcat |
7360553 |
T |
|
| Q |
201 |
gaaaaagt |
208 |
Q |
| |
|
|||||||| |
|
|
| T |
7360552 |
gaaaaagt |
7360545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 101 - 190
Target Start/End: Original strand, 10157924 - 10158013
Alignment:
| Q |
101 |
ttgtaccagcctaaaacgaagcggaaacgggtgtccccgcctgttatctctctgcgatagcgcgcgacgtttcttgtctccaaaagagac |
190 |
Q |
| |
|
|||||||||||| |||||||||| || ||| |||||| || |||||||| |||||||| ||||| || || | ||||||||||||||| |
|
|
| T |
10157924 |
ttgtaccagcctgaaacgaagcgaaagtgggagtcccctcccgttatctccctgcgataacgcgcaacattcttcgtctccaaaagagac |
10158013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 6 - 208
Target Start/End: Original strand, 1729866 - 1730068
Alignment:
| Q |
6 |
gataacctcgatagttacgtctcaatccatccccgtgacagttgtgccagttgttgcaaaatcgacggcgaaccaaccgaggaggcagtaatctcttgta |
105 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| ||||||||||||||||||| || |
|
|
| T |
1729866 |
gataacctcgatagttgcgtctcaatccatccccgtgacagttgtgccagttattgcaaaatcgacggcggaccaactgaggaggcagtaatctcttata |
1729965 |
T |
|
| Q |
106 |
ccagcctaaaacgaagcggaaacgggtgtccccgcctgttatctctctgcgatagcgcgcgacgtttcttgtctccaaaagagacaagaaatcatgaaaa |
205 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
1729966 |
ccagcctgaaacgaagcggaaacgggtgtccccgcctgttatctctctgcgatagcgcgcgacgtttcttgtctccaaaagagaccagaaatcatgaaaa |
1730065 |
T |
|
| Q |
206 |
agt |
208 |
Q |
| |
|
||| |
|
|
| T |
1730066 |
agt |
1730068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 149; Significance: 7e-79; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 1 - 173
Target Start/End: Complemental strand, 41375703 - 41375531
Alignment:
| Q |
1 |
agggtgataacctcgatagttacgtctcaatccatccccgtgacagttgtgccagttgttgcaaaatcgacggcgaaccaaccgaggaggcagtaatctc |
100 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
41375703 |
agggtgataacctcgatagttgcgtctcaatccatccccgtgacagttgtaccagttattgcaaaatcgacggcgaaccaactaaggaggcagtaatctc |
41375604 |
T |
|
| Q |
101 |
ttgtaccagcctaaaacgaagcggaaacgggtgtccccgcctgttatctctctgcgatagcgcgcgacgtttc |
173 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41375603 |
ttgtaccagcctgaaacgaagcggaaacgggtgtccccgcctgttatctctctgcgatagcgcgcgacgtttc |
41375531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 5 - 204
Target Start/End: Original strand, 22080863 - 22081063
Alignment:
| Q |
5 |
tgataacctcgatagttacgtctcaatccatccccgtgacagttgtgccagttgttgcaaaatcgacggcgaaccaaccgaggaggcagtaatctcttgt |
104 |
Q |
| |
|
||||| ||||||||||| || ||||||||||||||| |||||||||||||||||||||| |||||||| || | ||| | ||||||||||||||||||| |
|
|
| T |
22080863 |
tgataccctcgatagttgcgcctcaatccatccccgcgacagttgtgccagttgttgcagaatcgacgacggattaactggggaggcagtaatctcttgt |
22080962 |
T |
|
| Q |
105 |
accagcc-taaaacgaagcggaaacgggtgtccccgcctgttatctctctgcgatagcgcgcgacgtttcttgtctccaaaagagacaagaaatcatgaa |
203 |
Q |
| |
|
||||||| | | ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
22080963 |
accagccattagacgaagcggaaacgggtatccccgcctgttatctccctgcgatagcgcgcgacgtttcttgtctccaaaagagaccagaaatcatgaa |
22081062 |
T |
|
| Q |
204 |
a |
204 |
Q |
| |
|
| |
|
|
| T |
22081063 |
a |
22081063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 144; Significance: 7e-76; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 14329281 - 14329074
Alignment:
| Q |
1 |
agggtgataacctcgatagttacgtctcaatccatccccgtgacagttgtgccagttgttgcaaaatcgacggcgaaccaaccgaggaggcagtaatctc |
100 |
Q |
| |
|
||||||||| ||||||||||| |||||||||||||||||| |||||||||||||||||||||| |||||||| | || ||||||||||||||||||||| |
|
|
| T |
14329281 |
agggtgatagcctcgatagttgcgtctcaatccatccccgcgacagttgtgccagttgttgcagaatcgacgacaaatcaaccgaggaggcagtaatctt |
14329182 |
T |
|
| Q |
101 |
ttgtaccagcctaaaacgaagcggaaacgggtgtccccgcctgttatctctctgcgatagcgcgcgacgtttcttgtctccaaaagagacaagaaatcat |
200 |
Q |
| |
|
|| ||||||||| ||||||||||||||||||||||| | || ||||| ||||||||||||||||||||||||| |||||||||||||||| ||||||||| |
|
|
| T |
14329181 |
ttataccagcctgaaacgaagcggaaacgggtgtccacacccgttatgtctctgcgatagcgcgcgacgtttcgtgtctccaaaagagaccagaaatcat |
14329082 |
T |
|
| Q |
201 |
gaaaaagt |
208 |
Q |
| |
|
|||||||| |
|
|
| T |
14329081 |
gaaaaagt |
14329074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 11 - 190
Target Start/End: Complemental strand, 18166907 - 18166727
Alignment:
| Q |
11 |
cctcgatagttacgtctcaatccatccccgtgacagttgtgccagttgttgcaaaatcgacggcgaaccaaccgaggaggcagtaatctcttgtaccagc |
110 |
Q |
| |
|
|||||||||||||| || | |||||| || |||| ||||||||||||||||| |||||||| | || ||| | |||||||| || | ||||||||||| |
|
|
| T |
18166907 |
cctcgatagttacgccttagtccatctccacgacaattgtgccagttgttgcagaatcgacgacaaattaactggggaggcagcaaccgcttgtaccagc |
18166808 |
T |
|
| Q |
111 |
ctaaaacgaagcggaaacgggtgtccccgcctgttatctctctgcgatagcgcgcgac-gtttcttgtctccaaaagagac |
190 |
Q |
| |
|
|| | |||||||||||| ||| |||||| ||||||||||| |||||||| ||||| || ||| ||||||||||||||||| |
|
|
| T |
18166807 |
ctgagacgaagcggaaatgggagtcccctcctgttatctccctgcgataacgcgcaacatttttttgtctccaaaagagac |
18166727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 96; Significance: 3e-47; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 24954604 - 24954802
Alignment:
| Q |
1 |
agggtgataacctcgatagttacgtctcaatccatccccgtgacagttgtgccagttgttgcaaaatcgacggcgaaccaaccgaggaggcagtaatctc |
100 |
Q |
| |
|
||||||||| ||||||||||| |||||||||||||||||| |||||| ||||||| |||||||| || | ||| ||||||||||||||||| |
|
|
| T |
24954604 |
agggtgatagcctcgatagttgcgtctcaatccatccccgcgacagt---------tgttgcagaatcgacgacggatcaatcgaggaggcagtaatctt |
24954694 |
T |
|
| Q |
101 |
ttgtaccagcctaaaacgaagcggaaacgggtgtccccgcctgttatctctctgcgatagcgcgcgacgtttcttgtctccaaaagagacaagaaatcat |
200 |
Q |
| |
|
|| ||||||||| ||||||||||||||| ||||||| |||||||||| |||| ||||| ||||||||||||| |||||||| ||||||| ||||||||| |
|
|
| T |
24954695 |
ttataccagcctgaaacgaagcggaaacaggtgtccacgcctgttatgtctcgacgatatcgcgcgacgtttcgtgtctccagaagagaccagaaatcat |
24954794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 15 - 190
Target Start/End: Complemental strand, 23621730 - 23621554
Alignment:
| Q |
15 |
gatagttacgtctcaatccatccccgtgacagttgtgccagttgttgcaaaatcgacggcgaaccaac-cgaggaggcagtaatctcttgtaccagccta |
113 |
Q |
| |
|
||||||| || || |||||||| || |||||||||||||||||||||| |||||||| |||| ||| | || ||||| || ||||||||||||| | |
|
|
| T |
23621730 |
gatagttgcgccttaatccatctccacgacagttgtgccagttgttgcagaatcgacgacgaattaactggggggggcagcaacctcttgtaccagcatg |
23621631 |
T |
|
| Q |
114 |
aaacgaagcggaaacgggtgtccccgcctgttatctctctgcgatagcgcgcgacgtttcttgtctccaaaagagac |
190 |
Q |
| |
|
|||||||||||||| ||| |||||| ||||||||||| |||||||| ||||| || ||| ||||||||||||||||| |
|
|
| T |
23621630 |
aaacgaagcggaaatgggagtcccctcctgttatctccctgcgataacgcgcaacattttttgtctccaaaagagac |
23621554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 11 - 190
Target Start/End: Original strand, 22643223 - 22643402
Alignment:
| Q |
11 |
cctcgatagttacgtctcaatccatccccgtgacagttgtgccagttgttgcaaaatcgacggcgaaccaaccgaggaggcagtaatctcttgtaccagc |
110 |
Q |
| |
|
||||||||||| || || | |||||| || ||||||||||| |||||||||| |||||||| |||| ||| ||||| || || ||||||||||||| |
|
|
| T |
22643223 |
cctcgatagttgcgccttagtccatctccaagacagttgtgctagttgttgcagaatcgacgacgaattaacttgggaggaagcaacctcttgtaccagc |
22643322 |
T |
|
| Q |
111 |
ctaaaacgaagcggaaacgggtgtccccgcctgttatctctctgcgatagcgcgcgacgtttcttgtctccaaaagagac |
190 |
Q |
| |
|
|||| |||||| ||||| ||| ||||| |||||| |||| |||||||| |||| || ||| ||||||||||||||||| |
|
|
| T |
22643323 |
ctaagacgaagtggaaatgggactcccctcctgttgtctccctgcgataatgcgcaacattttttgtctccaaaagagac |
22643402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 11 - 190
Target Start/End: Complemental strand, 23196129 - 23195950
Alignment:
| Q |
11 |
cctcgatagttacgtctcaatccatccccgtgacagttgtgccagttgttgcaaaatcgacggcgaaccaaccgaggaggcagtaatctcttgtaccagc |
110 |
Q |
| |
|
||||||||||| || || | |||||| || |||||||||||||||||||||| |||||||| |||| || | ||||||| || ||||| |||||| |
|
|
| T |
23196129 |
cctcgatagttgcgccttagtccatctccacgacagttgtgccagttgttgcagaatcgacgacgaattaattggggaggcaacaacctcttaaaccagc |
23196030 |
T |
|
| Q |
111 |
ctaaaacgaagcggaaacgggtgtccccgcctgttatctctctgcgatagcgcgcgacgtttcttgtctccaaaagagac |
190 |
Q |
| |
|
|| | || ||||||||| ||| |||||| ||| ||||||| |||||||| ||||| || ||| ||||||||||||||||| |
|
|
| T |
23196029 |
ctgagacaaagcggaaatgggagtcccctcctattatctccctgcgataacgcgcaacattttttgtctccaaaagagac |
23195950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0051 (Bit Score: 82; Significance: 6e-39; HSPs: 1)
Name: scaffold0051
Description:
Target: scaffold0051; HSP #1
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 5 - 190
Target Start/End: Original strand, 74327 - 74512
Alignment:
| Q |
5 |
tgataacctcgatagttacgtctcaatccatccccgtgacagttgtgccagttgttgcaaaatcgacggcgaaccaaccgaggaggcagtaatctcttgt |
104 |
Q |
| |
|
||||| ||||| |||||||| || | |||||| || |||||||||||||||||||||| |||||||| || | ||| ||||||||||| ||||||| |
|
|
| T |
74327 |
tgataccctcggtagttacgccttagtccatctccacgacagttgtgccagttgttgcagaatcgacgacggattaacttgggaggcagtaacctcttgt |
74426 |
T |
|
| Q |
105 |
accagcctaaaacgaagcggaaacgggtgtccccgcctgttatctctctgcgatagcgcgcgacgtttcttgtctccaaaagagac |
190 |
Q |
| |
|
|||||||| | |||||||| |||||||||||||| ||||||||||| |||||||||||||| || ||| | ||||||||||||||| |
|
|
| T |
74427 |
accagcctgagacgaagcgaaaacgggtgtcccctcctgttatctccctgcgatagcgcgcaacatttttcgtctccaaaagagac |
74512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0897 (Bit Score: 68; Significance: 1e-30; HSPs: 1)
Name: scaffold0897
Description:
Target: scaffold0897; HSP #1
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 11 - 190
Target Start/End: Complemental strand, 4123 - 3944
Alignment:
| Q |
11 |
cctcgatagttacgtctcaatccatccccgtgacagttgtgccagttgttgcaaaatcgacggcgaaccaaccgaggaggcagtaatctcttgtaccagc |
110 |
Q |
| |
|
||||||||||| ||||| | |||||| || |||||||||||||||||||||| |||| ||| ||||| ||||| |||||||| || || |||||||||| |
|
|
| T |
4123 |
cctcgatagttgcgtcttagtccatctccacgacagttgtgccagttgttgcagaatcaacgacgaactaaccggggaggcagcaacctattgtaccagc |
4024 |
T |
|
| Q |
111 |
ctaaaacgaagcggaaacgggtgtccccgcctgttatctctctgcgatagcgcgcgacgtttcttgtctccaaaagagac |
190 |
Q |
| |
|
| | || |||| |||| ||| ||||| ||||||||||| |||||||| ||||| || ||| ||||||||||||||||| |
|
|
| T |
4023 |
atgagacaaagcagaaatgggaatcccctcctgttatctccctgcgataacgcgcaacattttttgtctccaaaagagac |
3944 |
T |
|
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Target: scaffold0319 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: scaffold0319
Description:
Target: scaffold0319; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 11 - 190
Target Start/End: Original strand, 19302 - 19480
Alignment:
| Q |
11 |
cctcgatagttacgtctcaatccatccccgtgacagttgtgccagttgttgcaaaatcgacggcgaaccaaccgaggaggcagtaatctcttgtaccagc |
110 |
Q |
| |
|
||||||||||| || || | |||||| || | |||||||||||||||||||| |||||||| |||| ||| | || ||||| || ||||||||||||| |
|
|
| T |
19302 |
cctcgatagttgcgccttagtccatctccagggcagttgtgccagttgttgcagaatcgacgacgaattaactgggg-ggcagcaacctcttgtaccagc |
19400 |
T |
|
| Q |
111 |
ctaaaacgaagcggaaacgggtgtccccgcctgttatctctctgcgatagcgcgcgacgtttcttgtctccaaaagagac |
190 |
Q |
| |
|
|| |||||||| ||||| ||| ||||| ||||||||||| |||||||| ||||| || ||| ||||||||||||||||| |
|
|
| T |
19401 |
ctgaaacgaagtggaaatgggaatcccctcctgttatctccctgcgataacgcgcaacattttttgtctccaaaagagac |
19480 |
T |
|
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Target: scaffold0040 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: scaffold0040
Description:
Target: scaffold0040; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 11 - 200
Target Start/End: Original strand, 35883 - 36072
Alignment:
| Q |
11 |
cctcgatagttacgtctcaatccatccccgtgacagttgtgccagttgttgcaaaatcgacggcgaaccaaccgaggaggcagtaatctcttgtaccagc |
110 |
Q |
| |
|
||||||||||| ||||||| ||||| | | |||||||||||||||||||| ||||| || |||| ||| | || ||||| || ||||||||||||| |
|
|
| T |
35883 |
cctcgatagttgcgtctcagcccatctctagggcagttgtgccagttgttgcagaatcggcgacgaattaactggggcggcagcaacctcttgtaccagc |
35982 |
T |
|
| Q |
111 |
ctaaaacgaagcggaaacgggtgtccccgcctgttatctctctgcgatagcgcgcgacgtttcttgtctccaaaagagacaagaaatcat |
200 |
Q |
| |
|
|| |||||||||| || ||| |||||| ||||||||||| |||||||| ||||| || || ||||||||||||||||| |||| |||| |
|
|
| T |
35983 |
ctgaaacgaagcgaaagtgggagtcccctcctgttatctccctgcgataacgcgcaacattctttgtctccaaaagagaccagaagtcat |
36072 |
T |
|
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Target: scaffold0304 (Bit Score: 56; Significance: 2e-23; HSPs: 2)
Name: scaffold0304
Description:
Target: scaffold0304; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 11 - 190
Target Start/End: Complemental strand, 12559 - 12381
Alignment:
| Q |
11 |
cctcgatagttacgtctcaatccatccccgtgacagttgtgccagttgttgcaaaatcgacggcgaaccaaccgaggaggcagtaatctcttgtaccagc |
110 |
Q |
| |
|
||||||||||| || || | |||||| || | ||||||||||||||||| || |||||||| |||| ||| ||| ||||| || ||||||||||||| |
|
|
| T |
12559 |
cctcgatagttgcgccttagtccatctccagggcagttgtgccagttgtttcagaatcgacgacgaattaact-agggggcagcaacctcttgtaccagc |
12461 |
T |
|
| Q |
111 |
ctaaaacgaagcggaaacgggtgtccccgcctgttatctctctgcgatagcgcgcgacgtttcttgtctccaaaagagac |
190 |
Q |
| |
|
||||||| |||| |||| ||| || || ||||||||||| |||||||| ||||| || ||| ||||||||||||||||| |
|
|
| T |
12460 |
ctaaaacaaagcagaaatgggaatcgcctcctgttatctccctgcgataacgcgcaacattttttgtctccaaaagagac |
12381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0304; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 11 - 190
Target Start/End: Complemental strand, 18310 - 18132
Alignment:
| Q |
11 |
cctcgatagttacgtctcaatccatccccgtgacagttgtgccagttgttgcaaaatcgacggcgaaccaaccgaggaggcagtaatctcttgtaccagc |
110 |
Q |
| |
|
||||||||||| || || | |||||| || | ||||||||||||||||| || |||||||| |||| ||| ||| ||||| || ||||||||||||| |
|
|
| T |
18310 |
cctcgatagttgcgccttagtccatctccagggcagttgtgccagttgtttcagaatcgacgacgaattaact-agggggcagcaacctcttgtaccagc |
18212 |
T |
|
| Q |
111 |
ctaaaacgaagcggaaacgggtgtccccgcctgttatctctctgcgatagcgcgcgacgtttcttgtctccaaaagagac |
190 |
Q |
| |
|
||||||| |||| |||| ||| || || ||||||||||| |||||||| ||||| || ||| ||||||||||||||||| |
|
|
| T |
18211 |
ctaaaacaaagcagaaatgggaatcgcctcctgttatctccctgcgataacgcgcaacattttttgtctccaaaagagac |
18132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0108 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: scaffold0108
Description:
Target: scaffold0108; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 11 - 190
Target Start/End: Original strand, 38809 - 38988
Alignment:
| Q |
11 |
cctcgatagttacgtctcaatccatccccgtgacagttgtgccagttgttgcaaaatcgacggcgaaccaaccgaggaggcagtaatctcttgtaccagc |
110 |
Q |
| |
|
||||||||||| || || | |||||| || | ||||| |||||||||||||| ||||||||||||| ||| |||| ||||| || || |||||||||| |
|
|
| T |
38809 |
cctcgatagttgcgccttagtccatctccagggcagttttgccagttgttgcagaatcgacggcgaattaactgagggggcagcaaccttttgtaccagc |
38908 |
T |
|
| Q |
111 |
ctaaaacgaagcggaaacgggtgtccccgcctgttatctctctgcgatagcgcgcgacgtttcttgtctccaaaagagac |
190 |
Q |
| |
|
|| ||| |||||||||| ||| ||| | ||| ||||||| |||||||| ||||| || ||| | ||||||||||||||| |
|
|
| T |
38909 |
ctgaaatgaagcggaaatgggaatcctctcctattatctccctgcgataacgcgcaacatttttcgtctccaaaagagac |
38988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0064 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: scaffold0064
Description:
Target: scaffold0064; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 11 - 190
Target Start/End: Complemental strand, 32929 - 32750
Alignment:
| Q |
11 |
cctcgatagttacgtctcaatccatccccgtgacagttgtgccagttgttgcaaaatcgacggcgaaccaaccgaggaggcagtaatctcttgtaccagc |
110 |
Q |
| |
|
||||||||||| || || | |||||| || | ||||| |||||||||||||| ||||||||||||| ||| |||| ||||| || || |||||||||| |
|
|
| T |
32929 |
cctcgatagttgcgccttagtccatctccagggcagttttgccagttgttgcagaatcgacggcgaattaactgagggggcagcaaccttttgtaccagc |
32830 |
T |
|
| Q |
111 |
ctaaaacgaagcggaaacgggtgtccccgcctgttatctctctgcgatagcgcgcgacgtttcttgtctccaaaagagac |
190 |
Q |
| |
|
|| ||| |||||||||| ||| ||| | ||| ||||||| |||||||| ||||| || ||| | ||||||||||||||| |
|
|
| T |
32829 |
ctgaaatgaagcggaaatgggaatcctctcctattatctccctgcgataacgcgcaacatttttcgtctccaaaagagac |
32750 |
T |
|
Back To:
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Target: chr4 (Bit Score: 52; Significance: 5e-21; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 11 - 190
Target Start/End: Complemental strand, 13284652 - 13284473
Alignment:
| Q |
11 |
cctcgatagttacgtctcaatccatccccgtgacagttgtgccagttgttgcaaaatcgacggcgaaccaaccgaggaggcagtaatctcttgtaccagc |
110 |
Q |
| |
|
||||||||||| |||||||| ||||| || | |||||||||||||||||||| ||||| || |||| ||| || ||||| || ||||||||||||| |
|
|
| T |
13284652 |
cctcgatagttgcgtctcaacccatctccagggcagttgtgccagttgttgcagaatcggcgacgaattaactaggggggcagcaacctcttgtaccagc |
13284553 |
T |
|
| Q |
111 |
ctaaaacgaagcggaaacgggtgtccccgcctgttatctctctgcgatagcgcgcgacgtttcttgtctccaaaagagac |
190 |
Q |
| |
|
|| |||||||||| ||| || |||||| || |||||||| |||||||| || || || || | ||||||||||||||| |
|
|
| T |
13284552 |
ctgaaacgaagcgaaaataggagtcccctcccgttatctccctgcgataacgagcaacattcttcgtctccaaaagagac |
13284473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 11 - 190
Target Start/End: Complemental strand, 14562515 - 14562331
Alignment:
| Q |
11 |
cctcgatagttacgtctcaatccatccccgtgacagttgtgccagttgttgcaaaatcgacggcgaaccaaccgaggagg-----cagtaatctcttgta |
105 |
Q |
| |
|
||||||||||| || || | |||||| || | |||||||||||||||||||| ||||||||||||| ||| | || || ||| || || ||||| |
|
|
| T |
14562515 |
cctcgatagttgcgccttagtccatctccagggcagttgtgccagttgttgcagaatcgacggcgaattaactggggggggggggcagcaaccttttgta |
14562416 |
T |
|
| Q |
106 |
ccagcctaaaacgaagcggaaacgggtgtccccgcctgttatctctctgcgatagcgcgcgacgtttcttgtctccaaaagagac |
190 |
Q |
| |
|
||||||| |||||||||||||| ||| ||||| ||| ||||||| |||||||| ||||| || ||| | ||||||||||||||| |
|
|
| T |
14562415 |
ccagcctgaaacgaagcggaaatgggaatcccctcctattatctccctgcgataacgcgcaacatttttcgtctccaaaagagac |
14562331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0022 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: scaffold0022
Description:
Target: scaffold0022; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 98 - 190
Target Start/End: Original strand, 28605 - 28697
Alignment:
| Q |
98 |
ctcttgtaccagcctaaaacgaagcggaaacgggtgtccccgcctgttatctctctgcgatagcgcgcgacgtttcttgtctccaaaagagac |
190 |
Q |
| |
|
||||||||||||||| |||||||||| ||| ||| |||||| ||||||||||| |||||||| ||||| || ||| | ||||||||||||||| |
|
|
| T |
28605 |
ctcttgtaccagcctgaaacgaagcgaaaatgggagtcccctcctgttatctccctgcgataacgcgcaacatttttcgtctccaaaagagac |
28697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 11 - 123
Target Start/End: Complemental strand, 19030451 - 19030339
Alignment:
| Q |
11 |
cctcgatagttacgtctcaatccatccccgtgacagttgtgccagttgttgcaaaatcgacggcgaaccaaccgaggaggcagtaatctcttgtaccagc |
110 |
Q |
| |
|
||||||||||| ||||| | ||||| || | |||||||||||||||||||| |||||||| |||| ||| | | ||||| || ||||| ||||||| |
|
|
| T |
19030451 |
cctcgatagttgcgtcttagcccatctccagggcagttgtgccagttgttgcagaatcgacgacgaattaactggaggggcagcaacctcttataccagc |
19030352 |
T |
|
| Q |
111 |
ctaaaacgaagcg |
123 |
Q |
| |
|
||||||||||||| |
|
|
| T |
19030351 |
ctaaaacgaagcg |
19030339 |
T |
|
Back To:
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Target: scaffold0107 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: scaffold0107
Description:
Target: scaffold0107; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 44 - 123
Target Start/End: Original strand, 9089 - 9168
Alignment:
| Q |
44 |
cagttgtgccagttgttgcaaaatcgacggcgaaccaaccgaggaggcagtaatctcttgtaccagcctaaaacgaagcg |
123 |
Q |
| |
|
|||||| ||||||||||||| ||||| || |||| |||| ||||||||| || ||||| |||| |||| |||||||||| |
|
|
| T |
9089 |
cagttgcgccagttgttgcagaatcggcgacgaatcaactgaggaggcaacaaactcttataccggcctgaaacgaagcg |
9168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 77
Target Start/End: Complemental strand, 127818 - 127752
Alignment:
| Q |
11 |
cctcgatagttacgtctcaatccatccccgtgacagttgtgccagttgttgcaaaatcgacggcgaa |
77 |
Q |
| |
|
||||||||||| || || | |||||| || |||||||||||||||||||||| |||||||| |||| |
|
|
| T |
127818 |
cctcgatagttgcgccttagtccatctccacgacagttgtgccagttgttgcagaatcgacgacgaa |
127752 |
T |
|
Back To:
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