View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6911_low_6 (Length: 483)
Name: NF6911_low_6
Description: NF6911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6911_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 449; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 1 - 477
Target Start/End: Complemental strand, 6555008 - 6554532
Alignment:
| Q |
1 |
ccatcagtgtcgatgaggataggcctgcagcgcacatcctcattcattaagcttgaattctggaagtgagcaacgagggctgcttttccttgtatgcgag |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6555008 |
ccatcagtgtcgatgaggataggcctgcagcgcttatcctcattcattaagcttgaattctggaagtgagcaacgagggctgcttttccttgtatgcgag |
6554909 |
T |
|
| Q |
101 |
catatgcgagtgatgccactttctcactattgaatttctcccatttcttcccgttgaaaccctgcaagaattgcatcacaggctttagtctattgatacg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |
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| T |
6554908 |
catatgcgagtgatgccactttctcactattgaatttctcccatttcttcccgttgaaaccctgcaagaattgcatcacaggctttagtccatcgataca |
6554809 |
T |
|
| Q |
201 |
tggcatgtgtgtctgatgtatgtgattaattttagccgcaatcattatcattttctgagtctaacctgatagaatggtacaatcaagctgggactagtca |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6554808 |
tggcatgtgtgtctgatgtatgtgattaattttagccgcaatcattatcattttctgagtctaacctgatagaatggtacaatcaagctgggactagtca |
6554709 |
T |
|
| Q |
301 |
tgttgatgaatgcatatccaacattgcatttgttctgcaatcaatgttgattccatgtgaataattaactaaaataaaaagaatgccaaaataaattaaa |
400 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6554708 |
tgttgatgaatgcatatccaacattgcatttgttctgcaatcaatgttgattccatgtgaataattaactaaaataaaaagaatgccaaaataaattaaa |
6554609 |
T |
|
| Q |
401 |
cataggaagagaaaagcacttactctgaaatcaattggtagatacacaaaatcataagctcctttatgatgtccatc |
477 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |
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| T |
6554608 |
cataggaagagaaaagcacttactctgaaatcaattggtagatacacaaaatcataagctcctttatggtgttcatc |
6554532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 158; E-Value: 7e-84
Query Start/End: Original strand, 1 - 458
Target Start/End: Original strand, 49057547 - 49058014
Alignment:
| Q |
1 |
ccatcagtgtcgatgaggataggcctgcagcgcacatcctcattcattaagcttgaattctggaagtgagcaacgagggctgcttttccttgtatgcgag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| || |||| ||||||| |||||||||| |||||| ||| ||| || |||| ||| ||||||||||||| |
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|
| T |
49057547 |
ccatcagtgtcgatgaggataggcctgcagtgcttatccacattcatcaagcttgaatgctggaaatgattaacaagagctgttttcccttgtatgcgag |
49057646 |
T |
|
| Q |
101 |
catatgcgagtgatgccactttctcactattgaatttctcccatttcttcccgttgaaaccctgcaagaattgcatcacaggctttagtctattgatacg |
200 |
Q |
| |
|
||||||| ||||| |||||||||||||| ||||||||||||||||| ||||| ||||| ||||||| ||||| ||| | || |||||||||| |||| |
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|
| T |
49057647 |
catatgcaagtgacgccactttctcactgttgaatttctcccattttttcccattgaacgcctgcaa-aattgaatcgctggatttagtctatcaataca |
49057745 |
T |
|
| Q |
201 |
tggcatgtgtgtctgatgtatgtgattaattttagccgca-atcattatcattttctgagtctaacctgatagaatggtacaatcaagctgggactagtc |
299 |
Q |
| |
|
|| || ||| ||||| ||| ||||||||||||| || | |||||||||||| | ||||||| |||||| |||| ||||||||| ||||||||| |
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|
| T |
49057746 |
ggg--tgcatgtgtgatgcatgcaattaattttagccacacaaaattatcattttcggcagctaacctcatagaaaggtataatcaagctaggactagtc |
49057843 |
T |
|
| Q |
300 |
atgttgatgaatgcatatccaacattgcatttgttctgcaatcaatgttgattccatgtgaataattaacta--aaataaaaagaatgccaaaataaatt |
397 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| ||||||||| | |||||||| || | |||||||||||| |
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|
| T |
49057844 |
atgttgatgaatgcatatccagcattgcatttgttctgcaatcaatgttgattcaatgttaataattaagaaacaaataaaaggagttccaaaataaatt |
49057943 |
T |
|
| Q |
398 |
aaacataggaaga----------gaaaagcacttactctgaaatcaattggtagatacacaaaatcataag |
458 |
Q |
| |
|
|||||| |||| |||| ||| |||||||||||||||||||||||||||||| ||||||| |
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|
| T |
49057944 |
aaacatttaaagataaaaaagataaaaaacacgtactctgaaatcaattggtagatacacaaagtcataag |
49058014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 40 - 167
Target Start/End: Original strand, 40158060 - 40158187
Alignment:
| Q |
40 |
tcattcattaagcttgaattctggaagtgagcaacgagggctgcttttccttgtatgcgagcatatgcgagtgatgccactttctcactattgaatttct |
139 |
Q |
| |
|
|||||||| | ||||||||||||||| |||| ||| || | ||| ||||||| || || |||||||| |||||||| ||||| ||||| || || |||| |
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|
| T |
40158060 |
tcattcatcaggcttgaattctggaaatgagaaacaagagaagctcttccttgaattcgggcatatgcaagtgatgctactttttcactgttaaacttct |
40158159 |
T |
|
| Q |
140 |
cccatttcttcccgttgaaaccctgcaa |
167 |
Q |
| |
|
|||||||||| || | |||| ||||||| |
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|
| T |
40158160 |
cccatttcttaccatggaaagcctgcaa |
40158187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 306 - 340
Target Start/End: Original strand, 40158350 - 40158384
Alignment:
| Q |
306 |
atgaatgcatatccaacattgcatttgttctgcaa |
340 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| |
|
|
| T |
40158350 |
atgaatgcatatccaacattacatttgttctgcaa |
40158384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 40 - 152
Target Start/End: Original strand, 45037871 - 45037983
Alignment:
| Q |
40 |
tcattcattaagcttgaattctggaagtgagcaacgagggctgcttttccttgtatgcgagcatatgcgagtgatgccactttctcactattgaatttct |
139 |
Q |
| |
|
|||||||| | ||||||||||||||| ||||||| || || | ||||||||| || || |||||||| ||| ||| || || ||||| || || |||| |
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| T |
45037871 |
tcattcatcaggcttgaattctggaaatgagcaataagagcagattttccttgaattcgggcatatgcaagtactgctaccttttcactgttaaacttct |
45037970 |
T |
|
| Q |
140 |
cccatttcttccc |
152 |
Q |
| |
|
||||||| ||||| |
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|
| T |
45037971 |
cccattttttccc |
45037983 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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