View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6911_low_7 (Length: 464)
Name: NF6911_low_7
Description: NF6911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6911_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 433; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 7 - 447
Target Start/End: Complemental strand, 43547674 - 43547234
Alignment:
| Q |
7 |
atggtggttggtggagatgctggaattggatgtggcgccataacttccacaagcaacttttgaccatgactgcaatgctcatcagttccacttataaagt |
106 |
Q |
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| T |
43547674 |
atggtggttggtggagatgctggaattggatgtggcgccataacttccacaagcaacttttgaccatgactgcaatgctcatcagttccacttataaagt |
43547575 |
T |
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| Q |
107 |
agaaaggtccagatctgtcaagattaagagtgctctttccattggtaaaagtagtgataggttgacttgcatcacaattaaagtaatcaaacttctccac |
206 |
Q |
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| T |
43547574 |
agaaaggtccagatctgtcaagattaagagtgctctttccattggtaaaagtagtgataggttgacttgcatcacaattaaagtaatcaaacttctccac |
43547475 |
T |
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| Q |
207 |
agtaagaactgaatcattcttgtactcaaaaactgcataaacaaaaatgtgaatcataacttgggctgcaagaaaaagaaatgaagtgaataatgaatta |
306 |
Q |
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| T |
43547474 |
agtaagaactgaatcattctcgtactcaaaaactgcataaacaaaaatgtgaatcataacttgggctgcaagaaaaagaaatgaagtgaataatgaatta |
43547375 |
T |
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| Q |
307 |
aaaagtattatataccgagagaatctccgatttggaaacggtttctttcagcccattgagtgtaaaaagcagtgttgtttggttcaggttcacgccaacc |
406 |
Q |
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| T |
43547374 |
aaaagcattatataccgagagaatctccgatttggaaacggtttctttcagcccattgagtgtaaaaagcagtgttgtttggttcaggttcacgccaacc |
43547275 |
T |
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| Q |
407 |
taaacgaccaccaacttggaattgttttgcagattgaacac |
447 |
Q |
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| T |
43547274 |
taaacgaccaccaacttggaattgttttgcagattgaacac |
43547234 |
T |
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