View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6912_high_1 (Length: 239)

Name: NF6912_high_1
Description: NF6912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6912_high_1
NF6912_high_1
[»] chr4 (1 HSPs)
chr4 (5-79)||(9109294-9109368)
[»] chr3 (1 HSPs)
chr3 (1-81)||(3570649-3570729)
[»] chr5 (1 HSPs)
chr5 (1-81)||(34501778-34501858)
[»] chr7 (3 HSPs)
chr7 (5-77)||(21371542-21371614)
chr7 (1-49)||(40646431-40646479)
chr7 (36-90)||(11363810-11363864)
[»] chr6 (1 HSPs)
chr6 (5-77)||(11766374-11766446)
[»] chr1 (2 HSPs)
chr1 (4-67)||(19702474-19702537)
chr1 (174-225)||(203774-203825)


Alignment Details
Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 5 - 79
Target Start/End: Original strand, 9109294 - 9109368
Alignment:
Q  5 tgtgaaagtgactctgataagtcactggtgcagcaactcacatcaaacattataactgaggtgttcgtatatata 79  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| ||||||||    
T  9109294 tgtgaaagtgactctgataagtcactggtgcagcaactcacatcagacactataactgaggtgttcctatatata 9109368  T

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Target: chr3 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 3570729 - 3570649
Alignment:
Q  1 tttatgtgaaagtgactctgataagtcactggtgcagcaactcacatcaaacattataactgaggtgttcgtatatatata 81  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| ||||||| |  ||||||||||    
T  3570729 tttatgtgaaagtgactcagataagtcactggtgcagcaactcacatcagacattataattgaggtggttatatatatata 3570649  T

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Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 34501858 - 34501778
Alignment:
Q  1 tttatgtgaaagtgactctgataagtcactggtgcagcaactcacatcaaacattataactgaggtgttcgtatatatata 81  Q
    ||||||||||||| |||| |||||||||||||||||||||||||||||| ||| ||||| ||||||| || ||||||||||    
T  34501858 tttatgtgaaagtaactcagataagtcactggtgcagcaactcacatcagacactataattgaggtggtcctatatatata 34501778  T

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Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 5 - 77
Target Start/End: Original strand, 21371542 - 21371614
Alignment:
Q  5 tgtgaaagtgactctgataagtcactggtgcagcaactcacatcaaacattataactgaggtgttcgtatata 77  Q
    |||||||||||||| |||||||||||||||||||||||||||||| ||| ||||| ||||||| || ||||||    
T  21371542 tgtgaaagtgactcagataagtcactggtgcagcaactcacatcagacagtataattgaggtggtcctatata 21371614  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 40646431 - 40646479
Alignment:
Q  1 tttatgtgaaagtgactctgataagtcactggtgcagcaactcacatca 49  Q
    ||||||||||||||||||  |||||||| ||||||||||||||||||||    
T  40646431 tttatgtgaaagtgactcaaataagtcaatggtgcagcaactcacatca 40646479  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 90
Target Start/End: Complemental strand, 11363864 - 11363810
Alignment:
Q  36 agcaactcacatcaaacattataactgaggtgttcgtatatatataagctagtga 90  Q
    ||||||||| |||| ||| ||||| ||||||| || |||||||||||||||||||    
T  11363864 agcaactcaaatcagacactataattgaggtgatcctatatatataagctagtga 11363810  T

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Target: chr6 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 5 - 77
Target Start/End: Complemental strand, 11766446 - 11766374
Alignment:
Q  5 tgtgaaagtgactctgataagtcactggtgcagcaactcacatcaaacattataactgaggtgttcgtatata 77  Q
    |||||||||||||| |||||||||||||||||||||||||||||| ||| ||||| ||||||| || ||||||    
T  11766446 tgtgaaagtgactcagataagtcactggtgcagcaactcacatcagacagtataattgaggtggtcctatata 11766374  T

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Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 4 - 67
Target Start/End: Complemental strand, 19702537 - 19702474
Alignment:
Q  4 atgtgaaagtgactctgataagtcactggtgcagcaactcacatcaaacattataactgaggtg 67  Q
    ||||||||||||||| ||||||||| |||||||||||||||||||| ||| ||||| |||||||    
T  19702537 atgtgaaagtgactcggataagtcattggtgcagcaactcacatcagacactataattgaggtg 19702474  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 174 - 225
Target Start/End: Complemental strand, 203825 - 203774
Alignment:
Q  174 gacagacgtacatataaaagaacagccattccagttcaaaacaaagtttatg 225  Q
    ||||||| |||| ||||||||||||||||||||| |||||||||||||||||    
T  203825 gacagacttacagataaaagaacagccattccaggtcaaaacaaagtttatg 203774  T

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