View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6912_high_2 (Length: 405)
Name: NF6912_high_2
Description: NF6912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6912_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 1 - 350
Target Start/End: Complemental strand, 44803804 - 44803460
Alignment:
| Q |
1 |
atttgaaatgatgaaaatgaaaagagtgaatctggtaatgaaagaaaagtaattaccattggaaagattagattttgatttgatttgaattggtgaaaac |
100 |
Q |
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| T |
44803804 |
atttgaaatgatgaaaatgaaaagagtgaatctggtaatgaaagaaaagtaattaccattggaaagattatattttgatttgatttg-----gtgaaaac |
44803710 |
T |
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| Q |
101 |
tgaacgaacgaacgaaaccgaacaagaaccggaagctggat---cctctgtcgtctctggagaaccccaatttataaatcttatttttcgattttcaaat |
197 |
Q |
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| T |
44803709 |
tgaacgaacgaacgaaaccgaacaagaaccggaagctggatgatcctctgtcgtctctggagaaccccaatttataaatcttatttttcgattttcaaat |
44803610 |
T |
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| Q |
198 |
atatccatttttatatagattgataaaaatatagaataggaaaaaatagagtttttgaaatgtgttgaaattaattaaggaaaatattaacaacaaatac |
297 |
Q |
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| T |
44803609 |
atatccatttttatatagattgataaaaatatagaataggaaaaaatagagtttttgaaatgtgttgaaattaattaaggaaaatatta---acaaatac |
44803513 |
T |
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| Q |
298 |
aatctaatattagaatgaaaatgtgatattatttttaatagaaaaaattgata |
350 |
Q |
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| T |
44803512 |
agtctaacattagaatgaaaatgtgatattatttttaatagaaaaaattgata |
44803460 |
T |
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