View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6912_high_4 (Length: 240)
Name: NF6912_high_4
Description: NF6912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6912_high_4 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 5538915 - 5538693
Alignment:
| Q |
18 |
attcgcacccttacatgagatgatactagataccaacctcattgtgttcattgtacaaagcaatagtggcaaacagtttaagacattgatccttggnnnn |
117 |
Q |
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| T |
5538915 |
attcgcacccttacatgagatgatactagataccaacctcattgtgttcattgtacaaagaaatagtggcaaacagtttaagacattgatccttggaaaa |
5538816 |
T |
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| Q |
118 |
nnnntctgtatttgctcttaaaaaccgccataggcattcagcgagtagcttaacatgtacatgcatgtaaaataaacagatattttaactacctcgagta |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5538815 |
aaaatctgtatttgctcttaaaaaccgccataggcattcagcgagtagcttaacatatacatgcatgtaaaataaacagatattttaactacctcgagta |
5538716 |
T |
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| Q |
218 |
aaaacaaaatcatttttccagtt |
240 |
Q |
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||||||||||||||||||||||| |
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| T |
5538715 |
aaaacaaaatcatttttccagtt |
5538693 |
T |
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